Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0323
(660 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80844-1|AAB37976.1| 317|Caenorhabditis elegans Hypothetical pr... 77 1e-14
AL110482-2|CAB60335.1| 316|Caenorhabditis elegans Hypothetical ... 67 9e-12
AL110482-1|CAB54385.1| 316|Caenorhabditis elegans Hypothetical ... 67 9e-12
AL110482-3|CAB60336.1| 339|Caenorhabditis elegans Hypothetical ... 56 2e-08
Z75553-1|CAA99947.2| 320|Caenorhabditis elegans Hypothetical pr... 56 3e-08
U55368-5|AAA97992.2| 333|Caenorhabditis elegans Hypothetical pr... 54 7e-08
U80844-2|AAB37972.1| 134|Caenorhabditis elegans Hypothetical pr... 52 3e-07
Z81088-3|CAB03128.1| 283|Caenorhabditis elegans Hypothetical pr... 50 2e-06
Z71181-2|CAA94895.1| 301|Caenorhabditis elegans Hypothetical pr... 46 2e-05
U50068-4|AAB37733.1| 287|Caenorhabditis elegans Hypothetical pr... 45 4e-05
U21324-6|AAA62562.1| 287|Caenorhabditis elegans Hypothetical pr... 44 1e-04
Z81088-2|CAB03127.1| 297|Caenorhabditis elegans Hypothetical pr... 43 2e-04
U21308-3|AAB93322.2| 321|Caenorhabditis elegans Hypothetical pr... 43 2e-04
U00033-13|AAC48300.1| 439|Caenorhabditis elegans Mechanosensory... 31 0.72
U39654-1|AAA80407.2| 131|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z73424-1|CAA97779.1| 386|Caenorhabditis elegans Hypothetical pr... 28 6.8
L07144-4|AAK21440.2| 187|Caenorhabditis elegans Hypothetical pr... 27 8.9
AL023835-11|CAA19495.1| 335|Caenorhabditis elegans Hypothetical... 27 8.9
AF000197-8|AAB52897.2| 328|Caenorhabditis elegans Star (rna bin... 27 8.9
AF000197-7|AAU20839.1| 445|Caenorhabditis elegans Star (rna bin... 27 8.9
AF000197-6|AAP68907.1| 403|Caenorhabditis elegans Star (rna bin... 27 8.9
>U80844-1|AAB37976.1| 317|Caenorhabditis elegans Hypothetical
protein C07D8.6 protein.
Length = 317
Score = 76.6 bits (180), Expect = 1e-14
Identities = 37/83 (44%), Positives = 51/83 (61%)
Frame = +3
Query: 294 ATLKLRDGTFMPVIALGTALLPPRLATEIVETAIDMGYRAIDTAYIYGNEKLIGKAIKNK 473
A++KL +G MPVI LGT P V+TA+ GYR IDTA +Y NE+ IG AIK
Sbjct: 6 ASIKLSNGVEMPVIGLGTWQSSPAEVITAVKTAVKAGYRLIDTASVYQNEEAIGTAIKEL 65
Query: 474 IDDGTVRRDELLLWVNCGVHSIA 542
+++G V+R+EL + H +A
Sbjct: 66 LEEGVVKREELFITTKAWTHELA 88
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +2
Query: 509 IMGKLWSTFHRTDLVETACRISLADLGLEFFDLFLIHNPMSF 634
I K W+ +E R SL L LE+ DL+L H P +F
Sbjct: 78 ITTKAWTHELAPGKLEGGLRESLKKLQLEYVDLYLAHMPAAF 119
>AL110482-2|CAB60335.1| 316|Caenorhabditis elegans Hypothetical
protein Y39G8B.1b protein.
Length = 316
Score = 67.3 bits (157), Expect = 9e-12
Identities = 31/74 (41%), Positives = 47/74 (63%)
Frame = +3
Query: 291 VATLKLRDGTFMPVIALGTALLPPRLATEIVETAIDMGYRAIDTAYIYGNEKLIGKAIKN 470
V +LKL G +P I LGT P ++TA+ GYR ID A++Y N+K +G+A+K
Sbjct: 2 VQSLKLNSGYSIPAIGLGTWQSKPGEVAAAIKTAVAAGYRHIDCAHVYQNQKEVGEALKE 61
Query: 471 KIDDGTVRRDELLL 512
+D+G V+R+EL +
Sbjct: 62 ILDEGKVKREELFI 75
Score = 38.7 bits (86), Expect = 0.004
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +2
Query: 509 IMGKLWSTFHRTDLVETACRISLADLGLEFFDLFLIHNPMSF-EGRQQF 652
I K+W+TFH I L+DL L + DL LIH P + EG + F
Sbjct: 75 ITSKVWNTFHSEAKAHENIDIILSDLQLSYVDLMLIHWPQGYAEGAELF 123
>AL110482-1|CAB54385.1| 316|Caenorhabditis elegans Hypothetical
protein Y39G8B.1a protein.
Length = 316
Score = 67.3 bits (157), Expect = 9e-12
Identities = 31/74 (41%), Positives = 47/74 (63%)
Frame = +3
Query: 291 VATLKLRDGTFMPVIALGTALLPPRLATEIVETAIDMGYRAIDTAYIYGNEKLIGKAIKN 470
V +LKL G +P I LGT P ++TA+ GYR ID A++Y N+K +G+A+K
Sbjct: 2 VQSLKLNSGYSIPAIGLGTWQSKPGEVAAAIKTAVAAGYRHIDCAHVYQNQKEVGEALKE 61
Query: 471 KIDDGTVRRDELLL 512
+D+G V+R+EL +
Sbjct: 62 ILDEGKVKREELFI 75
Score = 38.7 bits (86), Expect = 0.004
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +2
Query: 509 IMGKLWSTFHRTDLVETACRISLADLGLEFFDLFLIHNPMSF-EGRQQF 652
I K+W+TFH I L+DL L + DL LIH P + EG + F
Sbjct: 75 ITSKVWNTFHSEAKAHENIDIILSDLQLSYVDLMLIHWPQGYAEGAELF 123
>AL110482-3|CAB60336.1| 339|Caenorhabditis elegans Hypothetical
protein Y39G8B.2 protein.
Length = 339
Score = 56.4 bits (130), Expect = 2e-08
Identities = 31/72 (43%), Positives = 41/72 (56%)
Frame = +3
Query: 297 TLKLRDGTFMPVIALGTALLPPRLATEIVETAIDMGYRAIDTAYIYGNEKLIGKAIKNKI 476
T+ L G MPVI GT LP LA E V A++ GYR ID+A + N++ + IK+
Sbjct: 6 TVTLNSGYEMPVIGYGTWQLPKNLAAERVRDALEAGYRHIDSALSFKNQEEVAAGIKDWC 65
Query: 477 DDGTVRRDELLL 512
VRR+EL L
Sbjct: 66 KIRKVRREELFL 77
>Z75553-1|CAA99947.2| 320|Caenorhabditis elegans Hypothetical
protein ZC443.1 protein.
Length = 320
Score = 55.6 bits (128), Expect = 3e-08
Identities = 27/85 (31%), Positives = 43/85 (50%)
Frame = +3
Query: 288 EVATLKLRDGTFMPVIALGTALLPPRLATEIVETAIDMGYRAIDTAYIYGNEKLIGKAIK 467
+V L +G MP I LGT + ++ A+ GYR IDTA +Y NE IG A+
Sbjct: 4 KVPIFTLSNGVLMPSIGLGTWQMTGEEGKTVIRNAVLAGYRHIDTATLYQNEHQIGDALA 63
Query: 468 NKIDDGTVRRDELLLWVNCGVHSIA 542
+G ++R+++ + H +A
Sbjct: 64 ELFAEGILKREDIFITTKAFCHEVA 88
Score = 30.7 bits (66), Expect = 0.96
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +2
Query: 545 DLVETACRISLADLGLEFFDLFLIHNPMS 631
D+VE A R SL L L++ DL+L H P S
Sbjct: 90 DVVEEALRNSLKRLRLDYVDLYLAHIPAS 118
>U55368-5|AAA97992.2| 333|Caenorhabditis elegans Hypothetical
protein T08H10.1 protein.
Length = 333
Score = 54.4 bits (125), Expect = 7e-08
Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Frame = +3
Query: 291 VATLKLRDGTFMPVIALGTALLPPRLA-TEIVETAIDMGYRAIDTAYIYGNEKLIGKAIK 467
V ++ L G +P+ LGT + T + A+D GYR IDTA++Y NE +IGK +
Sbjct: 3 VDSIPLNTGAQLPLFGLGTWQVKDEAELTVALRAALDAGYRLIDTAHLYQNEHIIGKVLH 62
Query: 468 NKIDDGTVRRDELLL 512
I G ++R+++ +
Sbjct: 63 EYISSGKLKREDIFV 77
Score = 30.7 bits (66), Expect = 0.96
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +2
Query: 509 IMGKLWSTFHRTDLVETACRISLADLGLEFFDLFLIHNPMSFEGRQ 646
+ KL T H + V L L LE+ DL+LIH P F+ ++
Sbjct: 77 VTSKLPFTAHAPEDVPKCVESQLKALQLEYIDLYLIHCPFPFKHQE 122
>U80844-2|AAB37972.1| 134|Caenorhabditis elegans Hypothetical
protein C07D8.5 protein.
Length = 134
Score = 52.4 bits (120), Expect = 3e-07
Identities = 28/71 (39%), Positives = 38/71 (53%)
Frame = +3
Query: 300 LKLRDGTFMPVIALGTALLPPRLATEIVETAIDMGYRAIDTAYIYGNEKLIGKAIKNKID 479
L L + MP + LGT V+ A+ GY IDTA Y NE+ IG AIK I
Sbjct: 48 LTLSNAHSMPAVGLGTWQSNAEDVISAVKAAVKNGYSLIDTASGYNNEEFIGTAIKEVIA 107
Query: 480 DGTVRRDELLL 512
+G V+R++L +
Sbjct: 108 EGVVKREDLFI 118
>Z81088-3|CAB03128.1| 283|Caenorhabditis elegans Hypothetical
protein F53F1.3 protein.
Length = 283
Score = 49.6 bits (113), Expect = 2e-06
Identities = 23/72 (31%), Positives = 41/72 (56%)
Frame = +3
Query: 297 TLKLRDGTFMPVIALGTALLPPRLATEIVETAIDMGYRAIDTAYIYGNEKLIGKAIKNKI 476
++KL G P+I LGT + +++ A+ GYR DTA +Y NEK IG A++ +
Sbjct: 2 SIKLNTGYDCPLIGLGTYKIIGDQVLPVLDAALTAGYRLFDTAKVYNNEKEIGDALEILL 61
Query: 477 DDGTVRRDELLL 512
++R+++ +
Sbjct: 62 PKHNLKREDIFI 73
>Z71181-2|CAA94895.1| 301|Caenorhabditis elegans Hypothetical
protein K07C5.2 protein.
Length = 301
Score = 46.0 bits (104), Expect = 2e-05
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Frame = +3
Query: 303 KLRDGTFMPVIALGTALLPPRLATEI-VETAIDMGYRAIDTAYIYGNEKLIGKAIKNKID 479
K DG MP I LG + + + ++ +E A+ GYR DTA +Y NE +G ++K +
Sbjct: 13 KFSDGYEMPKIGLGISRIETQQDLDVSIEAALKSGYRQFDTANLYKNETFLGNSLKKYLP 72
Query: 480 DGTVRRDELLL 512
+ R+++ +
Sbjct: 73 QFGLTREDVFI 83
>U50068-4|AAB37733.1| 287|Caenorhabditis elegans Hypothetical
protein C01G5.5 protein.
Length = 287
Score = 45.2 bits (102), Expect = 4e-05
Identities = 24/70 (34%), Positives = 39/70 (55%)
Frame = +3
Query: 303 KLRDGTFMPVIALGTALLPPRLATEIVETAIDMGYRAIDTAYIYGNEKLIGKAIKNKIDD 482
KL++G +P +ALGT V+ A+ +GYR+ DTA Y NEK +G A+K +
Sbjct: 3 KLKNGQEIPKLALGTYEAKGDQLFAAVDEALKVGYRSFDTAKYYENEKDLGLALKTLLPR 62
Query: 483 GTVRRDELLL 512
+ +++ L
Sbjct: 63 HNICSEDIYL 72
>U21324-6|AAA62562.1| 287|Caenorhabditis elegans Hypothetical
protein C35D10.6 protein.
Length = 287
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/66 (28%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Frame = +3
Query: 324 MPVIALGT-ALLPPRLATEIVETAIDMGYRAIDTAYIYGNEKLIGKAIKNKIDDGTVRRD 500
MP+I +GT + + ++++ GYR IDTA +Y NE IG+ ++ + ++R+
Sbjct: 11 MPLIGIGTWQVQKEEILRQVIDAGFKEGYRFIDTAQVYNNEAKIGRILEKLLPANGLKRE 70
Query: 501 ELLLWV 518
+ +W+
Sbjct: 71 D--IWI 74
>Z81088-2|CAB03127.1| 297|Caenorhabditis elegans Hypothetical
protein F53F1.2 protein.
Length = 297
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/70 (31%), Positives = 35/70 (50%)
Frame = +3
Query: 303 KLRDGTFMPVIALGTALLPPRLATEIVETAIDMGYRAIDTAYIYGNEKLIGKAIKNKIDD 482
KL G +P + GT + ++ A+ GYR DTA Y NEK +G+A+K +
Sbjct: 14 KLNSGYNIPFVGFGTYKVTGENVPPAIDAALTAGYRMFDTAKYYLNEKELGEALKILLPK 73
Query: 483 GTVRRDELLL 512
+ R ++ L
Sbjct: 74 HGLSRSDVFL 83
>U21308-3|AAB93322.2| 321|Caenorhabditis elegans Hypothetical
protein ZK1290.5 protein.
Length = 321
Score = 42.7 bits (96), Expect = 2e-04
Identities = 31/84 (36%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Frame = +3
Query: 291 VATLKLRDGTFMPVIALGTALLPPRLATEIVETAIDMGYRAIDTAYIYGNEKLIGKAIKN 470
+ T L + MP+I LGT ++ + GYR IDTA YG EK +G A+KN
Sbjct: 2 IPTTVLSNNVEMPLIGLGTTHSGGYYHDAVLHSIKKCGYRLIDTAKRYGVEKQLGIAVKN 61
Query: 471 KIDDGTVRRDELL----LW-VNCG 527
+V R+E+ LW V+CG
Sbjct: 62 ----CSVPREEMFLSTKLWPVDCG 81
>U00033-13|AAC48300.1| 439|Caenorhabditis elegans Mechanosensory
abnormality protein14 protein.
Length = 439
Score = 31.1 bits (67), Expect = 0.72
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Frame = +3
Query: 375 EIVETAIDMGYRAIDTAYIYG---NEKLIGKAI 464
+IVETAI G IDT Y Y +E ++GKA+
Sbjct: 118 KIVETAIKQGINYIDTGYWYSQSRSESILGKAL 150
>U39654-1|AAA80407.2| 131|Caenorhabditis elegans Hypothetical
protein C56G3.2 protein.
Length = 131
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +2
Query: 524 WSTFHRTDLVETACRISLADLGLEFFDLFLIHNPMSF 634
W+ +E A R SL L LE+ DL+L H P +F
Sbjct: 53 WTNELAPGRLEGALRDSLKKLHLEYVDLYLAHMPTAF 89
>Z73424-1|CAA97779.1| 386|Caenorhabditis elegans Hypothetical
protein C44B9.2 protein.
Length = 386
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = -3
Query: 379 ISVANRGGSKAVP--KAMTGMNVPSRSFKVATSFTLPFSLASFSLRP 245
+++ N+ G P +A PS+ K+A T PF++ S L P
Sbjct: 1 MTLRNQKGDSVTPQRRATAAPGAPSQQLKMAEKTTAPFAVMSVELPP 47
>L07144-4|AAK21440.2| 187|Caenorhabditis elegans Hypothetical
protein R05D3.8 protein.
Length = 187
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = -3
Query: 556 LHQISAMECTPQFTHNKSSSRLTVPSSILFLIAFPM 449
+H+I +CT + +++ +L V S LF+ FP+
Sbjct: 5 IHEIDRAKCTVEPAKDENDKKLKVESKRLFVSYFPL 40
>AL023835-11|CAA19495.1| 335|Caenorhabditis elegans Hypothetical
protein Y37A1B.12 protein.
Length = 335
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = -2
Query: 167 PGDS-SILTEVIFLNTKKHNMNQIIFILFVLTKDFQNKN*KNIQNLRFSKTRRLL 6
PG + +TE+I NT + + FV TKDF N K+I++ + +L+
Sbjct: 90 PGTGKNYVTEIIAKNTFRSGLQSPYVKYFVATKDFPNN--KHIEDYKLKLKEQLI 142
>AF000197-8|AAB52897.2| 328|Caenorhabditis elegans Star (rna
binding protein) familyprotein 2, isoform a protein.
Length = 328
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Frame = -2
Query: 203 FCLPLSKRRRPLP---GDSSILTEVIFLNTKKH 114
F SK PLP GDS++ TE +F+ K+H
Sbjct: 67 FQCEFSKESAPLPDAEGDSTVHTEKVFVPAKEH 99
>AF000197-7|AAU20839.1| 445|Caenorhabditis elegans Star (rna
binding protein) familyprotein 2, isoform c protein.
Length = 445
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Frame = -2
Query: 203 FCLPLSKRRRPLP---GDSSILTEVIFLNTKKH 114
F SK PLP GDS++ TE +F+ K+H
Sbjct: 109 FQCEFSKESAPLPDAEGDSTVHTEKVFVPAKEH 141
>AF000197-6|AAP68907.1| 403|Caenorhabditis elegans Star (rna
binding protein) familyprotein 2, isoform b protein.
Length = 403
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Frame = -2
Query: 203 FCLPLSKRRRPLP---GDSSILTEVIFLNTKKH 114
F SK PLP GDS++ TE +F+ K+H
Sbjct: 67 FQCEFSKESAPLPDAEGDSTVHTEKVFVPAKEH 99
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,677,520
Number of Sequences: 27780
Number of extensions: 306964
Number of successful extensions: 1107
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1107
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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