Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0321
(632 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c... 29 0.74
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 27 1.7
SPCC965.06 |||potassium channel subunit |Schizosaccharomyces pom... 27 2.3
SPCC1183.06 |ung1||uracil DNA N-glycosylase Ung1|Schizosaccharom... 27 2.3
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 27 2.3
SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces pombe... 27 2.3
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb... 27 3.0
SPCC417.05c |chr2|cfh2|chitin synthase regulatory factor |Schizo... 26 3.9
SPAC17A5.09c |||protein phosphatase regulatory subunit Glc9|Schi... 26 3.9
SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr 3||... 25 6.9
SPBC216.06c |swi1||replication fork protection complex subunit S... 25 6.9
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 9.1
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 25 9.1
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S... 25 9.1
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo... 25 9.1
>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 392
Score = 28.7 bits (61), Expect = 0.74
Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 9/75 (12%)
Frame = +2
Query: 239 RVLWNSPGTSAATNPIAMATVFKNTVFT--------NVAETPEGGVWWEGMGPA-PERLV 391
+V W PG + T + M V K+T F N A P + E A P+
Sbjct: 11 KVQWGRPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERF 70
Query: 392 DWKGQPWDPSKKTPA 436
DW + + P + PA
Sbjct: 71 DWLCEAYKPKSRVPA 85
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 27.5 bits (58), Expect = 1.7
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 466 RGAESGIWMCSRSFLAGVPGLTFPVDEALRSWS 368
R ESG S++ + GV L F D+ LR W+
Sbjct: 175 RFLESGFLRLSKNLVPGVISLLFSRDDELRRWA 207
>SPCC965.06 |||potassium channel subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 344
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +3
Query: 348 GCGGKAWDQLRSASSTGKVNPGTP 419
G G W L+S TGK N G P
Sbjct: 216 GYGATVWSPLKSGILTGKYNDGIP 239
>SPCC1183.06 |ung1||uracil DNA N-glycosylase
Ung1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 322
Score = 27.1 bits (57), Expect = 2.3
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = -2
Query: 400 FPVDEALRSWSHAFPPHPT-LRCFRHVSEHGVFEHRRHCYRIRSG 269
FP E + SWSH P H T + H + + C+ +R G
Sbjct: 116 FPPKEDIYSWSHHTPLHKTKVILLGQDPYHNIGQAHGLCFSVRPG 160
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 27.1 bits (57), Expect = 2.3
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 384 ASSTGKVNPGTPARKLRLHIQIPDSAPRQSSV 479
AS+ G V P+ R+H +P+SAP S+
Sbjct: 555 ASNLGDVGLRLPSPSPRIHTIVPNSAPEHPSI 586
>SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 373
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 159 KVECVGDDIAWMKFDKDGVLRAINSENG 242
K+E D +A + F+ DG + A S+NG
Sbjct: 183 KIEAHKDSLACLAFNSDGTMLATASDNG 210
>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 990
Score = 26.6 bits (56), Expect = 3.0
Identities = 10/37 (27%), Positives = 18/37 (48%)
Frame = +2
Query: 305 KNTVFTNVAETPEGGVWWEGMGPAPERLVDWKGQPWD 415
K+ +F +A + WW+ + P+PE+ W D
Sbjct: 400 KDEIFKQIAFSVVEKAWWKMLLPSPEQWNSWPSSSRD 436
>SPCC417.05c |chr2|cfh2|chitin synthase regulatory factor
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 512
Score = 26.2 bits (55), Expect = 3.9
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Frame = -2
Query: 490 VYHGTLLCRGAESGIWMCSRSFLAGVPGLTFPVDEALRSWSH--AFPPHPTLRCF-RHVS 320
V++ L + +W S+ +L GV + +P E W+ A+ H F + V
Sbjct: 404 VWYRRLARKRNPEAMWKLSQFYLNGVDDVIYPNPELANEWAKAAAYKNHHLASTFVQDVG 463
Query: 319 EHGVFE 302
+ VFE
Sbjct: 464 KEDVFE 469
>SPAC17A5.09c |||protein phosphatase regulatory subunit
Glc9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 310
Score = 26.2 bits (55), Expect = 3.9
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -1
Query: 581 RDSTTSGTPAGRLPPSRMADIGTPSSSPTHRLSWD 477
+ + S TP+ + S + GTPS RL WD
Sbjct: 27 QQNMVSSTPSIDMNESDCSGTGTPSEERIRRLRWD 61
>SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 454
Score = 25.4 bits (53), Expect = 6.9
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +3
Query: 66 PQGKKRYIAAAFPSACGKTNLA-MMTPTLPGYKVECVGDDIAWMKFDKDGVLRAINSENG 242
P K R+I A PS GKT++A ++ L V + D + + + RA N++
Sbjct: 17 PWRKVRFIGIAGPSGSGKTSVAQLIVKALNLPHVVILSLDSFYKSLNAEQKKRAFNNDYD 76
Query: 243 F 245
F
Sbjct: 77 F 77
>SPBC216.06c |swi1||replication fork protection complex subunit
Swi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 971
Score = 25.4 bits (53), Expect = 6.9
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -1
Query: 299 PSPLLSDS*RLTYLVNSKEPVFRVDGPQYAVLVELHPG 186
P P L+D+ YL K P+F + G + L E PG
Sbjct: 664 PFPKLTDT--FYYLEYGKSPLFSIHGSRKGPLYETVPG 699
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 25.0 bits (52), Expect = 9.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 254 SPGTSAATNPIAMATVFKNTVFTNVAETPE 343
S G ++ +P V KN+V +VAE PE
Sbjct: 79 STGDASTQSPETSENVVKNSVDESVAEKPE 108
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 25.0 bits (52), Expect = 9.1
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = -3
Query: 612 SSHEHAVLPVPRLDYERYAGRPSAAQQDGGYRHTLEL-SHSPSIMGHCSAGVQNLEFGCA 436
+S +HA V LD++ PS+ ++GG+ ++ +H ++ + + E G +
Sbjct: 255 ASPKHADTDVLGLDFDMTPSEPSSFPENGGFPSFVDANTHEQTLFPSSATNSFSFEHG-S 313
Query: 435 AGVFLLGS 412
AG + GS
Sbjct: 314 AGFPIPGS 321
>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
Mde10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 512
Score = 25.0 bits (52), Expect = 9.1
Identities = 9/23 (39%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +2
Query: 455 FCTP-AEQCPMIDGEWESSRVCR 520
FCT + +CP +D W+ R+C+
Sbjct: 386 FCTGISSKCP-VDENWDDGRICQ 407
>SPBC31F10.10c |||zf-MYND type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 25.0 bits (52), Expect = 9.1
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +1
Query: 505 LEGVPISAILLGGRRPAGV 561
L GVP ++ LL GRRP V
Sbjct: 352 LPGVPSTSALLDGRRPENV 370
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,038,040
Number of Sequences: 5004
Number of extensions: 71529
Number of successful extensions: 252
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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