Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0321
         (632 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g04130.1 68417.m00583 Ulp1 protease family protein contains P...    34   0.090
At3g17120.2 68416.m02185 expressed protein                             30   1.1  
At3g17120.1 68416.m02184 expressed protein                             30   1.1  
At5g34855.1 68418.m04092 hypothetical protein                          29   1.9  
At2g47410.1 68415.m05917 transducin family protein / WD-40 repea...    29   2.6  
At3g42060.1 68416.m04315 myosin heavy chain-related                    29   3.4  
At2g43440.1 68415.m05399 F-box family protein contains Pfam PF00...    29   3.4  
At1g48490.1 68414.m05420 protein kinase, putative similar to inc...    29   3.4  
At1g23590.1 68414.m02970 expressed protein contains Pfam profile...    29   3.4  
At3g05660.1 68416.m00630 disease resistance family protein conta...    28   4.5  
At4g05210.1 68417.m00785 bacterial transferase hexapeptide repea...    28   5.9  
At3g07210.1 68416.m00860 expressed protein predicted using genef...    28   5.9  
At3g06840.1 68416.m00811 expressed protein                             28   5.9  
At4g07500.1 68417.m01161 hypothetical protein                          27   7.8  
At2g38610.2 68415.m04743 KH domain-containing protein                  27   7.8  
At2g38610.1 68415.m04742 KH domain-containing protein                  27   7.8  

>At4g04130.1 68417.m00583 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; similar to At2g11345,  At3g42690
          Length = 1200

 Score = 33.9 bits (74), Expect = 0.090
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = -1

Query: 446 LDVQPEFSCWGPRVDLSSRRGAPELVPCLPTTPHPQVFP 330
           +D +P  +   P +DL +R G+P   PC P TP  QV P
Sbjct: 665 MDTKPIKTMEEP-LDLGNRAGSPRQTPCSPVTPIAQVIP 702


>At3g17120.2 68416.m02185 expressed protein
          Length = 219

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 15/37 (40%), Positives = 25/37 (67%)
 Frame = -3

Query: 564 RYAGRPSAAQQDGGYRHTLELSHSPSIMGHCSAGVQN 454
           +YAG PSA++ DGGY   + L+  P+++   S G++N
Sbjct: 179 QYAGNPSASEPDGGYTGPV-LAQRPNLLKPVS-GLEN 213


>At3g17120.1 68416.m02184 expressed protein
          Length = 219

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 15/37 (40%), Positives = 25/37 (67%)
 Frame = -3

Query: 564 RYAGRPSAAQQDGGYRHTLELSHSPSIMGHCSAGVQN 454
           +YAG PSA++ DGGY   + L+  P+++   S G++N
Sbjct: 179 QYAGNPSASEPDGGYTGPV-LAQRPNLLKPVS-GLEN 213


>At5g34855.1 68418.m04092 hypothetical protein
          Length = 425

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
 Frame = -1

Query: 554 AGRLPPSRMADIGTPSSSPTHRLSW----DTALPGCRIWNLDVQPEFS 423
           A  L PS+          P HR  W    +  +P  R+W  DV  EF+
Sbjct: 30  AASLLPSQPESQAAAPQPPVHRFPWPKLPNERIPSQRVWEKDVNKEFT 77


>At2g47410.1 68415.m05917 transducin family protein / WD-40 repeat
            family protein contains 5 WD-40 repeats (PF00400);
            similar to WDR protein, form B (GI:14970593) [Mus
            musculus]
          Length = 1589

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +2

Query: 335  TPEGGVWWEG-MGPAPERLVDWKGQPWD 415
            T EGG WWEG +  +  +  D+   PW+
Sbjct: 1423 TGEGGAWWEGRIESSQVKSTDFPESPWE 1450


>At3g42060.1 68416.m04315 myosin heavy chain-related
          Length = 712

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 217 CGPSTLKTGSLEFTRYVSRYESD 285
           C PS L+ GS E  RY  +++ D
Sbjct: 364 CSPSCLRMGSCELPRYTDQFDDD 386


>At2g43440.1 68415.m05399 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640 :
           F-box protein interaction domain
          Length = 791

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +3

Query: 147 LPGYKVECVGDDIAWMKFDKDGVLRAIN-SENGFFGIHQV 263
           LPG K  CV   I W++     ++ A++  E  + G+H +
Sbjct: 189 LPGSKSVCVNGSIYWLQISAGYIILAMDLHEESYHGVHHL 228


>At1g48490.1 68414.m05420 protein kinase, putative similar to
           incomplete root hair elongation (IRE) [Arabidopsis
           thaliana] gi|6729346|dbj|BAA89783
          Length = 878

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -1

Query: 464 GCRIWNLDVQPEFSCWGPRVDLSSRRGAPELVPCLPTT 351
           G +I N  +  E     P++   SRRG+ +++ C P T
Sbjct: 259 GMKISNASLTEELDVLSPKLSDWSRRGSEDMLDCFPET 296


>At1g23590.1 68414.m02970 expressed protein contains Pfam profile
           PF02713: Domain of unknown function DUF220
          Length = 217

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = -1

Query: 332 PPR**TRCF*TPS--PLLSDS*RLTYLVNSKEPVFRVDGPQYAVLVE 198
           PPR     F  P   PL+SD      LVN K  V + DGP+  V V+
Sbjct: 75  PPRSVFELFTNPDNLPLVSDKSWRQLLVNKKRKVLKRDGPRQIVEVD 121


>At3g05660.1 68416.m00630 disease resistance family protein contains
           leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Cf-2.2 [Lycopersicon
           pimpinellifolium] gi|1184077|gb|AAC15780
          Length = 883

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -3

Query: 357 HHTPPSGVSATLVNTVFLNTVAIAIGFVAADVPG 256
           H   PSG S TL +   L+ +A AIGF    V G
Sbjct: 807 HEPTPSGESETLESEQVLSWIAAAIGFTPGIVLG 840


>At4g05210.1 68417.m00785 bacterial transferase hexapeptide
           repeat-containing protein similar to SP|P32203
           UDP-3-O-[3-hydroxymyristoyl] glucosamine
           N-acyltransferase (EC 2.3.1.-) {Yersinia
           enterocolitica}; contains Pfam profile PF00132:
           Bacterial transferase hexapeptide (three repeats)
          Length = 299

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 346 TLRCFRHVSEHGVFEHRRHCYRIR 275
           +LR    VS HGVF ++R  YR+R
Sbjct: 4   SLRTLFSVSTHGVFLNKRSSYRVR 27


>At3g07210.1 68416.m00860 expressed protein predicted using
           genefinder
          Length = 547

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -1

Query: 587 QSRDSTTSGTPAGRLPPSRMADIGTPSSSPT 495
           +S  S TS T      P+  AD+GTPSSS T
Sbjct: 261 KSERSCTSFTMRRVFKPNDSADVGTPSSSNT 291


>At3g06840.1 68416.m00811 expressed protein
          Length = 187

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 629 ASDLMEAPMNTPCCQSRDSTTSGTPAGRLPPSRMADIGTP 510
           A++ + +  NTP   +    +SG  AG L P+R  D+  P
Sbjct: 122 ATESLISGSNTPYRTTTSKPSSGPIAGTLTPARKGDVAIP 161


>At4g07500.1 68417.m01161 hypothetical protein 
          Length = 239

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
 Frame = -1

Query: 560 TPAGRLPPSRMADIGTPSSSPTHRLSWDTA----LPGCRIWNLDVQPEFS 423
           T AG  P    A +  P   P +R  W  +    +P  R+W  D+  EF+
Sbjct: 11  TAAGLRPSQPEAPVAAPLP-PIYRFPWPISPKEKIPSQRVWEKDINREFT 59


>At2g38610.2 68415.m04743 KH domain-containing protein
          Length = 286

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
 Frame = +2

Query: 308 NTVFTNVAETPEGGVWWEGMGP-----APERLVDWKGQPWDPSKKT 430
           + + +NV+ T  GG  W G+        P   +DW+G P  PS  T
Sbjct: 90  SNLMSNVSNTGLGG--WNGLSQERLSGTPGMTMDWQGAPGSPSSYT 133


>At2g38610.1 68415.m04742 KH domain-containing protein
          Length = 286

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
 Frame = +2

Query: 308 NTVFTNVAETPEGGVWWEGMGP-----APERLVDWKGQPWDPSKKT 430
           + + +NV+ T  GG  W G+        P   +DW+G P  PS  T
Sbjct: 90  SNLMSNVSNTGLGG--WNGLSQERLSGTPGMTMDWQGAPGSPSSYT 133


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,755,240
Number of Sequences: 28952
Number of extensions: 420404
Number of successful extensions: 1302
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1298
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)