Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0320
(440 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 48 8e-07
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 47 1e-06
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 46 3e-06
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 43 2e-05
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 42 3e-05
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 40 2e-04
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 39 3e-04
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 39 4e-04
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 39 4e-04
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 37 0.001
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 37 0.002
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 36 0.004
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 34 0.011
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 33 0.019
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 33 0.019
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 32 0.045
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 27 1.7
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces... 26 2.2
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 26 3.0
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2... 25 3.9
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 25 3.9
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 25 5.2
SPBC21C3.07c |||actin binding methyltransferase |Schizosaccharom... 25 6.8
SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomy... 24 9.0
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 24 9.0
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 47.6 bits (108), Expect = 8e-07
Identities = 20/54 (37%), Positives = 35/54 (64%)
Frame = +2
Query: 92 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFE 253
D +L+V NL+ T E+LR +F R G + +Y+ +D+ T ++GFAFV +++
Sbjct: 199 DDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYD 252
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 47.2 bits (107), Expect = 1e-06
Identities = 20/47 (42%), Positives = 30/47 (63%)
Frame = +2
Query: 113 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFE 253
V NL++ TT E + +F +CGE+ I + DR+T+ GF FV +FE
Sbjct: 36 VGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFE 82
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 46.0 bits (104), Expect = 3e-06
Identities = 20/50 (40%), Positives = 30/50 (60%)
Frame = +2
Query: 104 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFE 253
S+ V N+ Y TPE+L+ F CG V + I D++T +GFA++ F E
Sbjct: 56 SVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSE 105
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 42.7 bits (96), Expect = 2e-05
Identities = 18/53 (33%), Positives = 30/53 (56%)
Frame = +2
Query: 113 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFELVTLKK 271
V NL++ T +DL F CG++ I +P D + +GF +V F ++ + KK
Sbjct: 370 VGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKK 422
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 42.3 bits (95), Expect = 3e-05
Identities = 24/57 (42%), Positives = 31/57 (54%)
Frame = +2
Query: 77 PPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
P R DG + + L + TT + LR FE+ GEV D + RD T SRGF F+ F
Sbjct: 157 PFNREDG--KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTF 211
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 39.9 bits (89), Expect = 2e-04
Identities = 15/45 (33%), Positives = 28/45 (62%)
Frame = +2
Query: 119 NLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFE 253
NLTY +DL+ +F G++ +++P D+ T +GFA++ F +
Sbjct: 329 NLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHD 373
Score = 33.9 bits (74), Expect = 0.011
Identities = 13/45 (28%), Positives = 27/45 (60%)
Frame = +2
Query: 113 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
+ NL + T +D++ + G++ + +P+ ++ R +RGFAF F
Sbjct: 725 IKNLPFEATKKDVQSLLGAYGQLRSVRVPK-KFDRSARGFAFAEF 768
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 39.1 bits (87), Expect = 3e-04
Identities = 20/52 (38%), Positives = 30/52 (57%)
Frame = +2
Query: 92 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
D V L V NL ++ E L+ F+R G+V + IP D+ + +G+AFV F
Sbjct: 89 DRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEF 140
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 38.7 bits (86), Expect = 4e-04
Identities = 22/69 (31%), Positives = 34/69 (49%)
Frame = +2
Query: 65 SYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVR 244
S P P+ D + V NL + E L R F CG + + I RD T +GFA+++
Sbjct: 259 SVSHPMPQ-DTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQ 317
Query: 245 FFELVTLKK 271
F + + + K
Sbjct: 318 FKDTMGVDK 326
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 38.7 bits (86), Expect = 4e-04
Identities = 17/45 (37%), Positives = 28/45 (62%)
Frame = +2
Query: 113 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
+ NL + +D+ VF GE DI + RD+ T +S+GFAF+++
Sbjct: 35 IGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKY 79
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 37.1 bits (82), Expect = 0.001
Identities = 15/47 (31%), Positives = 30/47 (63%)
Frame = +2
Query: 107 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
L V N+ + T ED++ +FE G++ +++ RD R S+GF ++++
Sbjct: 342 LCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNR-SKGFGYIQY 387
Score = 35.9 bits (79), Expect = 0.003
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = +2
Query: 113 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
V L R T +L FE+ G V D I RD+ + S+G A+V F
Sbjct: 244 VSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEF 288
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 36.7 bits (81), Expect = 0.002
Identities = 18/52 (34%), Positives = 29/52 (55%)
Frame = +2
Query: 92 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
D ++ + L+Y T D+ R F R G + I + R++ T +S G+AFV F
Sbjct: 97 DPYKTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVF 148
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 35.5 bits (78), Expect = 0.004
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +2
Query: 107 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
L V + R ++L+++F + G V + I R+ T+ SRGF F+ F
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSF 149
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 33.9 bits (74), Expect = 0.011
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = +2
Query: 107 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFELVTLKK 271
L V NL + TT DL+ F + G++ + + T + +GF FV F ++ T K
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMK 284
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 33.1 bits (72), Expect = 0.019
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +2
Query: 104 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
+L V NL ++T +DL F G + + + T E+RG+ FV F
Sbjct: 6 TLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTF 53
Score = 25.8 bits (54), Expect = 3.0
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 262 AEEALDTMDGRMLDGRELRVQMA 330
AEEA+++++G +DGR + V A
Sbjct: 161 AEEAMNSLNGTEIDGRPIAVDWA 183
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 33.1 bits (72), Expect = 0.019
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +2
Query: 134 TTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFELVTLKKPW 277
T EDL +F R G++ + RD+ T +S +AF+ F +++K +
Sbjct: 255 TQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAY 302
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 31.9 bits (69), Expect = 0.045
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +2
Query: 104 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
++ + NL + T L + + G V +I+IPRDR GF F F
Sbjct: 12 TIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEF 59
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 26.6 bits (56), Expect = 1.7
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +2
Query: 107 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFV 241
L V N+ ++ +D+ F G+V + IP+ R+ + +GF +V
Sbjct: 759 LYVTNIDFKVNEKDVETFFRDYGQVESVRIPK-RF-NQHKGFGYV 801
>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 419
Score = 26.2 bits (55), Expect = 2.2
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -1
Query: 122 DYLLLTRPCHRFVAEVFRNSF*VV*IFSSNQTN*II 15
D++ +T P H FV + RNS + + S+N +N I+
Sbjct: 145 DFMNITDPTHGFVQYLDRNSSAKLGLISANSSNVIM 180
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 25.8 bits (54), Expect = 3.0
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 250 RARDAEEALDTMDGRMLDGRELR 318
R DA A+ +DG + DGR LR
Sbjct: 174 RKEDAARAIAAIDGSVSDGRHLR 196
>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
Mei2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 750
Score = 25.4 bits (53), Expect = 3.9
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 241 EVFRARDAEEALDTMDGRMLDGRELRV 321
E + RDA ALD +DGR++ L+V
Sbjct: 335 EFYDTRDASFALDELDGRIIHNCCLQV 361
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 25.4 bits (53), Expect = 3.9
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +1
Query: 247 FRARDAEEALDTMDGRMLDGRELRVQ 324
+R +A+ + T++G ++GR LRV+
Sbjct: 251 YRPEEAQVVVQTLNGYEINGRRLRVE 276
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 25.0 bits (52), Expect = 5.2
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +2
Query: 50 ILLKMSYGRPPPRIDGMVSLKVDNLTYRTT-PEDLRRVFERCGEVGDI 190
ILL+ + + D M S + + L +R PED+R FE G GDI
Sbjct: 856 ILLENGFQKFVQAFDDMESSR-EGLGFRELIPEDIRAHFEDVGLPGDI 902
>SPBC21C3.07c |||actin binding methyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 281
Score = 24.6 bits (51), Expect = 6.8
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = -1
Query: 215 LCTDLWECRYHQLLRTFRKRGVSLQASFGR*DYLLLTRPCHRFVAEVF 72
L D W+ L R + G+ L +GR D L +R ++E F
Sbjct: 203 LSPDQWQQAIENLYRLLKPGGLILFRDYGRLDLTQLRAKKNRILSENF 250
>SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 370
Score = 24.2 bits (50), Expect = 9.0
Identities = 8/26 (30%), Positives = 15/26 (57%)
Frame = -1
Query: 212 CTDLWECRYHQLLRTFRKRGVSLQAS 135
C +W+C+ Q + F +RG+ + S
Sbjct: 232 CDGIWDCKSSQQVVEFVRRGIVARQS 257
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 24.2 bits (50), Expect = 9.0
Identities = 28/112 (25%), Positives = 41/112 (36%), Gaps = 1/112 (0%)
Frame = +2
Query: 104 SLKVDNLTYRTTPEDLRRVF-ERCGEVGDIYIPRDRYTRESRGFAFVRFFELVTLKKPWT 280
S+ V +L+ D+ +F R I D T SRG+ FVRF + K
Sbjct: 187 SIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALA 246
Query: 281 RWTDECWTAGNFAFRWRDMVAPHRHTGVVTIAGXVQVSFPPS*LLAQS*PQP 436
+ G+ R + P V + V VS PP + + P P
Sbjct: 247 EMQGQ--ICGDRPIR-VGLATPKSKAHVFSPVNVVPVSMPPVGFYSAAQPVP 295
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,615,855
Number of Sequences: 5004
Number of extensions: 30894
Number of successful extensions: 111
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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