Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0320
(440 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.) 122 2e-28
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 3e-07
SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21) 47 8e-06
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) 44 7e-05
SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 1e-04
SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 1e-04
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 3e-04
SB_20581| Best HMM Match : RRM_1 (HMM E-Value=1.7e-07) 42 3e-04
SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.002
SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16) 39 0.002
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24) 39 0.002
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 38 0.003
SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18) 37 0.008
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.020
SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0) 35 0.034
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 34 0.045
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.045
SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18) 34 0.060
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 33 0.079
SB_13046| Best HMM Match : La (HMM E-Value=5e-23) 33 0.079
SB_19711| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.10
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 33 0.10
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 32 0.24
SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.32
SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15) 31 0.42
SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.56
SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.56
SB_42066| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.56
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.56
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.74
SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.74
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.97
SB_39934| Best HMM Match : RRM_1 (HMM E-Value=6.5e-24) 29 1.3
SB_8144| Best HMM Match : VWA (HMM E-Value=3.1e-16) 29 1.3
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_28070| Best HMM Match : RRM_1 (HMM E-Value=1.3e-07) 29 1.7
SB_17438| Best HMM Match : Alpha_L_fucos (HMM E-Value=1.1e-28) 29 1.7
SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017) 29 2.2
SB_20454| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.9
SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.9
SB_47196| Best HMM Match : Extensin_2 (HMM E-Value=0.02) 28 3.9
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 28 3.9
SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07) 27 5.2
SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35) 27 6.9
SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0) 27 6.9
SB_56972| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25) 27 9.1
SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 27 9.1
SB_8753| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
>SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 122 bits (293), Expect = 2e-28
Identities = 60/106 (56%), Positives = 70/106 (66%)
Frame = +2
Query: 74 RPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFE 253
R PP IDGM SLKVDNLTYRTT EDL++VF++ G++GDIYIPRDR T ESRGFAFVRF+E
Sbjct: 7 RGPPEIDGMTSLKVDNLTYRTTVEDLKQVFKKYGDLGDIYIPRDRNTHESRGFAFVRFYE 66
Query: 254 LVTLKKPWTRWTDECWTAGNFAFRWRDMVAPHRHTGVVTIAGXVQV 391
+ C A F FRWRDMV P G + V+V
Sbjct: 67 KRDAEDAMDCMDATCLMAEKFVFRWRDMVVPRIPIGRGVLVVMVEV 112
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 51.6 bits (118), Expect = 3e-07
Identities = 25/47 (53%), Positives = 31/47 (65%)
Frame = +2
Query: 113 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFE 253
V NL Y T DL +VFER G+V + I RD+ TRESRG AF+ F +
Sbjct: 14 VGNLPYSLTNSDLHKVFERYGKVVKVTILRDKETRESRGVAFILFID 60
>SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21)
Length = 304
Score = 46.8 bits (106), Expect = 8e-06
Identities = 17/48 (35%), Positives = 32/48 (66%)
Frame = +2
Query: 104 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
+++V NL+ T DL+ +F G + I++ +D++T +S+GFAF+ F
Sbjct: 182 TIRVTNLSEETRESDLQELFRPLGPISRIFLAKDKFTNQSKGFAFINF 229
>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
Length = 328
Score = 43.6 bits (98), Expect = 7e-05
Identities = 22/52 (42%), Positives = 29/52 (55%)
Frame = +2
Query: 92 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
D + L V L+Y TT E L+ F + GE+ + I D T RGFAFV+F
Sbjct: 26 DDIGKLFVGGLSYETTKESLKEYFSKYGELVGVDIKMDALTGRPRGFAFVQF 77
>SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 43.2 bits (97), Expect = 1e-04
Identities = 25/56 (44%), Positives = 32/56 (57%)
Frame = +2
Query: 104 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFELVTLKK 271
SL V NL+Y TT + L FE C I+ DR + ESRGF FV + ++ T KK
Sbjct: 290 SLIVRNLSYDTTTDSLGAAFEGCSNAKVIF---DRESGESRGFGFVDYDDVETAKK 342
>SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 42.7 bits (96), Expect = 1e-04
Identities = 22/52 (42%), Positives = 28/52 (53%)
Frame = +2
Query: 92 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
D L V L TT E LR FE GE+ D+ + D T++SRGF +V F
Sbjct: 11 DPRAKLFVGGLNRETTNETLREYFEAYGELTDVVVICDSATKKSRGFGYVTF 62
>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 41.5 bits (93), Expect = 3e-04
Identities = 21/47 (44%), Positives = 26/47 (55%)
Frame = +2
Query: 107 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
L V L Y TT +++ F R GE+ + D TR SRGF FVRF
Sbjct: 117 LIVLGLPYATTESEMKEYFTRFGEIDFCEVKLDPNTRRSRGFGFVRF 163
Score = 32.3 bits (70), Expect = 0.18
Identities = 22/65 (33%), Positives = 30/65 (46%)
Frame = +2
Query: 53 LLKMSYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 232
L ++ RP ++ L V L TT + L F + GEV D+YIP + R F
Sbjct: 183 LCEVRLPRPKEELNVPKKLFVGRLPESTTEKTLMEYFAQFGEVTDVYIP-----KPFRHF 237
Query: 233 AFVRF 247
FV F
Sbjct: 238 GFVTF 242
>SB_20581| Best HMM Match : RRM_1 (HMM E-Value=1.7e-07)
Length = 97
Score = 41.5 bits (93), Expect = 3e-04
Identities = 15/39 (38%), Positives = 27/39 (69%)
Frame = +2
Query: 131 RTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
R ED+R FE+ G + D+++ +D+ T+E+RG +V+F
Sbjct: 33 RHNAEDIRSAFEQYGTIEDVWVVKDKATKENRGVCYVKF 71
>SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 781
Score = 39.1 bits (87), Expect = 0.002
Identities = 17/40 (42%), Positives = 26/40 (65%)
Frame = +2
Query: 143 EDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFELVT 262
EDLR FE G++ + I RD TRE++G+ +V+F + T
Sbjct: 67 EDLRSKFESFGDIEYVQIVRDHKTRENKGYGYVKFHKSST 106
>SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16)
Length = 842
Score = 39.1 bits (87), Expect = 0.002
Identities = 23/65 (35%), Positives = 35/65 (53%)
Frame = +2
Query: 53 LLKMSYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 232
+L + YG + L V LT + + E LR+ FE+ GE+ + + RD T+ SRGF
Sbjct: 95 ILDIDYGTS--HFSSTLELSVIPLT-QASAEGLRQHFEKFGELKECVVMRDPVTKRSRGF 151
Query: 233 AFVRF 247
F+ F
Sbjct: 152 GFLTF 156
>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
Length = 407
Score = 38.7 bits (86), Expect = 0.002
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = +2
Query: 92 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
D S+ + NL + E LR +F CG V + + RDR T +GF +V F
Sbjct: 53 DHQRSVFIGNLPFDIEEEPLRELFTTCGNVESVRLIRDRKTGIGKGFGYVLF 104
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 38.3 bits (85), Expect = 0.003
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 140 PEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
P DL F + G+V D+ I DR +R S+G A++ F
Sbjct: 159 PRDLEEFFSKVGQVSDVRIISDRNSRRSKGIAYIEF 194
Score = 35.5 bits (78), Expect = 0.020
Identities = 19/59 (32%), Positives = 29/59 (49%)
Frame = +2
Query: 95 GMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFELVTLKK 271
G L V +L + T ++ VFE G V + + D T S+G+ FV+F E K+
Sbjct: 240 GPTRLYVGSLHFNITEAMVKAVFEPFGTVDSVQLIYDSETNRSKGYGFVQFREAEAAKR 298
>SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)
Length = 291
Score = 36.7 bits (81), Expect = 0.008
Identities = 15/45 (33%), Positives = 28/45 (62%)
Frame = +2
Query: 107 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFV 241
L V + Y + + LR+ F + GE+ + + +DR T++S+G+ FV
Sbjct: 12 LFVGGIPYESGDDALRKFFAQFGEIREAVVIKDRVTKKSKGYGFV 56
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 35.5 bits (78), Expect = 0.020
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = +2
Query: 113 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
+ NL ++ DL+ F R +V D+ + DR T+ RGFAFV F
Sbjct: 234 IGNLDFKVNEADLQDRFSRY-DVVDVQVISDRETQRPRGFAFVTF 277
Score = 27.1 bits (57), Expect = 6.9
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +1
Query: 256 RDAEEALDTMDGRMLDGRELRVQMA 330
++ E+A++ +DG+ DGR ++V A
Sbjct: 281 KNMEDAINELDGQEFDGRSMKVNQA 305
>SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 420
Score = 34.7 bits (76), Expect = 0.034
Identities = 20/56 (35%), Positives = 30/56 (53%)
Frame = +2
Query: 104 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFELVTLKK 271
+L VDNL+ T D+ R F G+V ++I DR T +S+G V+ T+ K
Sbjct: 320 TLFVDNLSEDTKELDVLRYFRPYGQVAKVHILTDRETGKSKGCGVVKLRHPGTVNK 375
Score = 31.9 bits (69), Expect = 0.24
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +2
Query: 107 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVR 244
L V +L + TT ++LR FE+CGE+ I + + R F R
Sbjct: 238 LMVQDLDFDTTVDELREYFEKCGELTGIDLLINSEKRTCAAIVFFR 283
Score = 27.5 bits (58), Expect = 5.2
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = +2
Query: 104 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
S+ V L T E L+ FE+ GEV + I R + SR + FV F
Sbjct: 81 SVFVGGLASGTDEEGLKDYFEQFGEVESVRIMR-TFLGYSRNYGFVLF 127
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 34.3 bits (75), Expect = 0.045
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +2
Query: 107 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFE 253
L V +LT + ++ +F G V + +P DR SRGFA+V + +
Sbjct: 1159 LYVAHLTRNVNKDHVQEIFSVYGRVKTVDLPTDRTNNLSRGFAYVEYVD 1207
Score = 27.5 bits (58), Expect = 5.2
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +1
Query: 259 DAEEALDTMDGRMLDGRELRVQ 324
+ E+AL MDG +DG+E+ VQ
Sbjct: 1210 ECEKALKHMDGGQIDGQEIAVQ 1231
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 34.3 bits (75), Expect = 0.045
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = +2
Query: 92 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
D +L ++ + + ED++++F G V + RDR T +S G+AFV +
Sbjct: 24 DERTNLIINYVPPSMSQEDIKKIFGTVGNVTSCKLIRDRATGQSLGYAFVNY 75
>SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18)
Length = 209
Score = 33.9 bits (74), Expect = 0.060
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +2
Query: 134 TTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
TT EDL +F R G + + RD+ T ES +AF+ F
Sbjct: 131 TTDEDLEIIFSRFGTILSCEVIRDQKTGESLQYAFIEF 168
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 33.5 bits (73), Expect = 0.079
Identities = 21/51 (41%), Positives = 29/51 (56%)
Frame = +2
Query: 104 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFEL 256
+L V N+ TT DL+ FER GEV D+ I + + +AFV+F EL
Sbjct: 250 TLFVGNIEKTTTYGDLKEAFERYGEVIDVDIKKQ---PGNNPYAFVQFAEL 297
>SB_13046| Best HMM Match : La (HMM E-Value=5e-23)
Length = 442
Score = 33.5 bits (73), Expect = 0.079
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +2
Query: 116 DNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
+ L + + L++VF G+V + +PR ++ E +GFAF+ F
Sbjct: 93 EKLPFHADHDWLKKVFSEFGKVLYVSLPRFKHNGEIKGFAFIEF 136
>SB_19711| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 203
Score = 33.1 bits (72), Expect = 0.10
Identities = 20/57 (35%), Positives = 28/57 (49%)
Frame = +2
Query: 107 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFELVTLKKPW 277
L + NL +DL+ + + G V I RD +S G A VRFF +L+ PW
Sbjct: 121 LIIQNLPKGIQEKDLKELLQLYGNVLVCNIERDS-NGDSSGSALVRFFRATSLQIPW 176
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 33.1 bits (72), Expect = 0.10
Identities = 13/56 (23%), Positives = 34/56 (60%)
Frame = +2
Query: 80 PPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
P + +++ + NL++ +T +++ +F++ G++ + D T+ S+G AFV++
Sbjct: 409 PSDVKEGLTVFIRNLSFDSTQKNITNLFKQFGDIAYCKVVVDHLTQHSKGSAFVKY 464
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 31.9 bits (69), Expect = 0.24
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +2
Query: 113 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
V L + L F G++ D+ IP D T + RGF FV F
Sbjct: 9 VGGLAEEVDEKVLHAAFIPFGDITDVQIPMDYTTSKHRGFGFVEF 53
>SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 381
Score = 31.5 bits (68), Expect = 0.32
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +2
Query: 143 EDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFELVTLKKPWTRWTDE 295
++L + E+CGE+ + + D T ++GFAF F E + + T D+
Sbjct: 167 DELIPLLEKCGEIREFRLQMDPATGLNKGFAFCTFTEQTSAYQAITTLNDK 217
>SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15)
Length = 171
Score = 31.1 bits (67), Expect = 0.42
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +2
Query: 146 DLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
++++ FE+ G V I + R + + S+G+AFV F
Sbjct: 113 EIKKFFEQFGTVNRIRLSRSKKSARSKGYAFVEF 146
>SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 30.7 bits (66), Expect = 0.56
Identities = 12/25 (48%), Positives = 20/25 (80%)
Frame = +1
Query: 256 RDAEEALDTMDGRMLDGRELRVQMA 330
RDAE+A+ +DGR + G+ +RV++A
Sbjct: 79 RDAEDAVRELDGRYICGQRVRVELA 103
>SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 30.7 bits (66), Expect = 0.56
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +2
Query: 107 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFV 241
L + NL + + ++ + FE G V + I RD+ + SRGF FV
Sbjct: 11 LYIGNLNFNSDEGEIEQAFEEFG-VEKVDILRDKESGRSRGFGFV 54
>SB_42066| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 240
Score = 30.7 bits (66), Expect = 0.56
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Frame = +2
Query: 101 VSLKVDNLTYR--TTPEDLRRVFERCGEVGDI-YIPRDR 208
+S+K +N R T E+L +FE CG+V D ++P+DR
Sbjct: 147 LSVKYNNDKTRESVTEEELTSMFEDCGDVADFRFLPKDR 185
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 30.7 bits (66), Expect = 0.56
Identities = 14/53 (26%), Positives = 29/53 (54%)
Frame = +2
Query: 89 IDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
++G + L V N+ +D+ +F GE+ ++++ DR T +G+A V +
Sbjct: 290 VEGWI-LFVTNIHEEAQEDDIHELFSDYGEIKNLHVNLDRRTGFIKGYALVEY 341
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 30.3 bits (65), Expect = 0.74
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +2
Query: 104 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFV 241
+L V N+ Y E + +F +CG V + I D ++ +GF FV
Sbjct: 276 TLYVYNIGYDANQEGITALFGQCGIVNKVDIMWDWQRQQCKGFCFV 321
>SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 783
Score = 30.3 bits (65), Expect = 0.74
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Frame = +2
Query: 80 PPRIDGMVS--LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFE 253
PP D + L V NL + +DLR FE+ G V D+ I R + +AFV+F +
Sbjct: 228 PPEEDPKATRTLFVGNLETGISCQDLRLSFEKFGVVLDVDIKRPA-RGQGNTYAFVKFAD 286
Query: 254 LVTLKKPWTRWTDEC 298
L K +C
Sbjct: 287 LDVAAKAKCAMQGQC 301
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 29.9 bits (64), Expect = 0.97
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +1
Query: 256 RDAEEALDTMDGRMLDGRELRVQMA 330
RDAE+A+ +DGR + G+ RV++A
Sbjct: 49 RDAEDAVRELDGRYICGQRARVELA 73
>SB_39934| Best HMM Match : RRM_1 (HMM E-Value=6.5e-24)
Length = 343
Score = 29.5 bits (63), Expect = 1.3
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 161 FERCGEVGDIYIPRDRYTRESRGFAFVRF 247
F GE+ +YIP + T+E +G V F
Sbjct: 141 FSSSGEIASVYIPENLKTKERKGHCIVTF 169
>SB_8144| Best HMM Match : VWA (HMM E-Value=3.1e-16)
Length = 193
Score = 29.5 bits (63), Expect = 1.3
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = -2
Query: 376 CDRNDSCMAMRGDHIAPSEREVP--CRPTFVRPSCP 275
C+ +D C G+ P E E P CR T + SCP
Sbjct: 27 CNSDDKCSP--GERCRPQENECPLKCRKTIKKKSCP 60
>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 29.1 bits (62), Expect = 1.7
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 143 EDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
++L VFE CG + D + D + ++GFAF F
Sbjct: 166 DELIPVFEECGHIYDFRLMIDPISGLTKGFAFCTF 200
>SB_28070| Best HMM Match : RRM_1 (HMM E-Value=1.3e-07)
Length = 694
Score = 29.1 bits (62), Expect = 1.7
Identities = 17/38 (44%), Positives = 20/38 (52%)
Frame = +2
Query: 107 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRE 220
L V L+ TT DLR VFE+ G V I I D +E
Sbjct: 183 LGVFGLSLYTTERDLRPVFEKYGPVEAIQIVYDHQAKE 220
>SB_17438| Best HMM Match : Alpha_L_fucos (HMM E-Value=1.1e-28)
Length = 261
Score = 29.1 bits (62), Expect = 1.7
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 242 RFFELVTLKKPWTRWTDECWTAGNFAFRWRDMVA 343
+ ++L+ +P WTD W A N FR R+ +A
Sbjct: 6 QMYDLINTYEPSYLWTDGDWVAPNEYFRSREFLA 39
>SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017)
Length = 255
Score = 28.7 bits (61), Expect = 2.2
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +2
Query: 71 GRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESR 226
G R V L V + +DLR +FE G++ ++ I +D+YT + +
Sbjct: 160 GTTSVRDSNSVKLFVGQVPRTWEEKDLRPIFEPYGQIYELTILKDKYTGQHK 211
>SB_20454| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 693
Score = 27.9 bits (59), Expect = 3.9
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = +2
Query: 56 LKMSYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRG 229
LK + GR P D + + D+ + DLR RCG +P D+ R ++G
Sbjct: 485 LKQTGGRIPENKDSLGRDRRDSCGTKEL-RDLRDAIRRCGVTDSPTVPDDKGKRNAKG 541
>SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4924
Score = 27.9 bits (59), Expect = 3.9
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +2
Query: 56 LKMSYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCG 175
+K+S+ R P+I S V T TTPE+LR++ E G
Sbjct: 1522 MKLSF-RTGPQIGRTKSGFVATYTSGTTPEELRKISENAG 1560
>SB_47196| Best HMM Match : Extensin_2 (HMM E-Value=0.02)
Length = 376
Score = 27.9 bits (59), Expect = 3.9
Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Frame = +2
Query: 95 GMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPR-DRYTRESRGFAFVRFFELVTLKK 271
G LK+ LT TP D+ R G+ D IPR R + RG + +KK
Sbjct: 155 GRRQLKISLLTEPDTPVDIARARSPRGQEQDPKIPRGQRQNQTPRGQRQSKIPSQRHIKK 214
Query: 272 -PWT 280
PWT
Sbjct: 215 LPWT 218
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 27.9 bits (59), Expect = 3.9
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = +2
Query: 98 MVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
M + V ++ + E +R F G + I + D + +GFAFV +
Sbjct: 101 MCRVYVGSINFELREEHIRTAFHPFGPINKIDLSWDPLNMKHKGFAFVEY 150
>SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07)
Length = 252
Score = 27.5 bits (58), Expect = 5.2
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 259 DAEEALDTMDGRMLDGRELRVQMA 330
+ E+A+D DG+ LDGR ++V A
Sbjct: 149 EMEKAIDEFDGQDLDGRPMKVNEA 172
>SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35)
Length = 929
Score = 27.1 bits (57), Expect = 6.9
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +2
Query: 68 YGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEV 181
YG PP R + S+ V+NL+ RT+ +DL+ F + G+V
Sbjct: 790 YG-PPVRTN--YSVIVENLSSRTSWQDLKDYFRKYGKV 824
>SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0)
Length = 672
Score = 27.1 bits (57), Expect = 6.9
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +2
Query: 119 NLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
+L T E L R F + I RD+ + +S+G+ FV F
Sbjct: 223 DLGSEVTDESLTRAFAKYTSFLKAKIVRDKKSNKSKGYGFVSF 265
>SB_56972| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 868
Score = 26.6 bits (56), Expect = 9.1
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = -2
Query: 310 PCRPTFVRPSCPGLLQRHELEKPHEGESSTFP 215
PCRP RP ++ + PH S+ P
Sbjct: 407 PCRPQPTRPQIESTRPQYVMSTPHSDNSNLLP 438
>SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25)
Length = 159
Score = 26.6 bits (56), Expect = 9.1
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 259 DAEEALDTMDGRMLDGRELRVQMA 330
+ E+A+D DG+ DGR ++V A
Sbjct: 57 EMEKAIDEFDGQDFDGRPMKVNQA 80
>SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 940
Score = 26.6 bits (56), Expect = 9.1
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Frame = -2
Query: 337 HIAP-SERE-VPCRPTFVRPS--CPGLLQRHELEKPHEGESSTFPCVPIS 200
H+ P +E + VPC P S CP + + + P E + PC P++
Sbjct: 555 HVPPVTEHDSVPCPPVTEHDSVPCPPVTEHSSVPCPPVTEHDSVPCPPVT 604
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 26.6 bits (56), Expect = 9.1
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 256 RDAEEALDTMDGRMLDGRELRVQ 324
RDAE+A+ DG DG +RV+
Sbjct: 311 RDAEDAVKGRDGHEFDGYRIRVE 333
>SB_8753| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 81
Score = 26.6 bits (56), Expect = 9.1
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = +2
Query: 44 ISILLKMSYGRPPPRIDGMVSLKVDNLTY---RTTPEDLRRVFERCGEVGD 187
+ +L ++ PPP S D LTY RT+P ++ + E GEVGD
Sbjct: 4 VKLLEEVPVHLPPPVFRDPQSSIQDKLTYPTSRTSPFEVCCIDEDGGEVGD 54
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,340,044
Number of Sequences: 59808
Number of extensions: 238072
Number of successful extensions: 835
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 859323430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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