Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0320
(440 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (spl... 95 2e-20
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 95 2e-20
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 46 1e-05
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 45 2e-05
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 45 2e-05
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 45 3e-05
AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical ... 44 7e-05
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 43 9e-05
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 43 9e-05
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 43 9e-05
Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical pr... 43 1e-04
U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical p... 43 1e-04
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 42 2e-04
U23484-10|AAC46772.1| 197|Caenorhabditis elegans Hypothetical p... 41 3e-04
Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical pr... 40 0.001
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 40 0.001
AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical ... 40 0.001
AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical ... 40 0.001
AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical ... 40 0.001
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 39 0.002
AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor pr... 38 0.004
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 38 0.004
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 38 0.004
Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical pr... 37 0.007
Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical pr... 36 0.010
Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical pr... 36 0.010
Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical pr... 36 0.010
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 36 0.010
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 36 0.010
U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene... 36 0.013
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 36 0.013
U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprote... 36 0.013
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 35 0.023
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 35 0.023
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 35 0.023
EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA... 35 0.023
EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA... 35 0.023
EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA... 35 0.023
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 35 0.023
AF040642-5|AAN73870.2| 138|Caenorhabditis elegans Hypothetical ... 35 0.030
Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical pr... 34 0.040
AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative RNA-... 34 0.040
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 34 0.053
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 33 0.070
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 33 0.070
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 33 0.070
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 33 0.070
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 33 0.070
AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical... 33 0.070
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 33 0.070
Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical pr... 33 0.12
DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding p... 33 0.12
Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical pr... 32 0.21
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 31 0.37
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 30 0.86
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 30 0.86
AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical ... 30 0.86
AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical... 29 1.1
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 29 1.5
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 29 1.5
U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical p... 29 2.0
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 29 2.0
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 28 2.6
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 28 2.6
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 28 2.6
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 28 3.5
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 28 3.5
AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin for... 27 4.6
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for... 27 4.6
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei... 27 4.6
AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protei... 27 4.6
U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein (sp... 27 6.0
U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein (sp... 27 6.0
U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein (spl... 27 6.0
>U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform b protein.
Length = 126
Score = 95.5 bits (227), Expect = 2e-20
Identities = 38/60 (63%), Positives = 52/60 (86%)
Frame = +2
Query: 74 RPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFE 253
R P I+G+ SLK+DNL+Y+TTP DLRR FER G++GD++IPRD+Y+R+S+GF FVRF+E
Sbjct: 10 RAAPDINGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYE 69
Score = 40.7 bits (91), Expect = 5e-04
Identities = 17/28 (60%), Positives = 22/28 (78%)
Frame = +1
Query: 247 FRARDAEEALDTMDGRMLDGRELRVQMA 330
+ RDAE ALD DG+++DGRELRV +A
Sbjct: 68 YERRDAEHALDRTDGKLVDGRELRVTLA 95
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 95.5 bits (227), Expect = 2e-20
Identities = 38/60 (63%), Positives = 52/60 (86%)
Frame = +2
Query: 74 RPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFE 253
R P I+G+ SLK+DNL+Y+TTP DLRR FER G++GD++IPRD+Y+R+S+GF FVRF+E
Sbjct: 10 RAAPDINGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYE 69
Score = 40.7 bits (91), Expect = 5e-04
Identities = 17/28 (60%), Positives = 22/28 (78%)
Frame = +1
Query: 247 FRARDAEEALDTMDGRMLDGRELRVQMA 330
+ RDAE ALD DG+++DGRELRV +A
Sbjct: 68 YERRDAEHALDRTDGKLVDGRELRVTLA 95
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 46.0 bits (104), Expect = 1e-05
Identities = 21/55 (38%), Positives = 32/55 (58%)
Frame = +2
Query: 89 IDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFE 253
+ G+ S+ V N ++TT E+L F G++ ++ I DR T RGFAF+ F E
Sbjct: 1 MSGIFSVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAE 55
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 45.2 bits (102), Expect = 2e-05
Identities = 20/53 (37%), Positives = 33/53 (62%)
Frame = +2
Query: 113 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFELVTLKK 271
+ L+++TT E+LR F R GEV + + RD T+ +RGF F+ F + ++ K
Sbjct: 49 IGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDK 101
Score = 37.5 bits (83), Expect = 0.004
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = +2
Query: 113 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
+ L+ +T ED+++ FE G+V D + D+ T+ RGF FV F
Sbjct: 138 IGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTF 182
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 45.2 bits (102), Expect = 2e-05
Identities = 20/53 (37%), Positives = 33/53 (62%)
Frame = +2
Query: 113 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFELVTLKK 271
+ L+++TT E+LR F R GEV + + RD T+ +RGF F+ F + ++ K
Sbjct: 49 IGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDK 101
Score = 37.5 bits (83), Expect = 0.004
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = +2
Query: 113 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
+ L+ +T ED+++ FE G+V D + D+ T+ RGF FV F
Sbjct: 138 IGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTF 182
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 44.8 bits (101), Expect = 3e-05
Identities = 22/50 (44%), Positives = 29/50 (58%)
Frame = +2
Query: 104 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFE 253
S+ V N ++TT +DL F + G V ++ I DR T RGFAFV F E
Sbjct: 5 SVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTE 54
>AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical
protein T08B6.5 protein.
Length = 177
Score = 43.6 bits (98), Expect = 7e-05
Identities = 18/55 (32%), Positives = 35/55 (63%)
Frame = +2
Query: 104 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFELVTLK 268
S+ V N+ +++T ++ F CG+V + IP+D++T + FAFV F +L +++
Sbjct: 47 SVYVGNVDWKSTVSEIEEHFAVCGKVARVTIPKDKFTGYQKNFAFVEFQKLESVQ 101
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 43.2 bits (97), Expect = 9e-05
Identities = 20/45 (44%), Positives = 27/45 (60%)
Frame = +2
Query: 113 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
V LT TT + +R + + GE+ DI + RD T+ SRGF FV F
Sbjct: 27 VGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTF 71
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 43.2 bits (97), Expect = 9e-05
Identities = 20/45 (44%), Positives = 27/45 (60%)
Frame = +2
Query: 113 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
V LT TT + +R + + GE+ DI + RD T+ SRGF FV F
Sbjct: 27 VGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTF 71
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 43.2 bits (97), Expect = 9e-05
Identities = 20/45 (44%), Positives = 27/45 (60%)
Frame = +2
Query: 113 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
V LT TT + +R + + GE+ DI + RD T+ SRGF FV F
Sbjct: 27 VGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTF 71
>Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical
protein C17E4.5 protein.
Length = 205
Score = 42.7 bits (96), Expect = 1e-04
Identities = 19/50 (38%), Positives = 29/50 (58%)
Frame = +2
Query: 104 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFE 253
S+ V N+ Y T E++ + F CG V + I DR++ +GFA+V F E
Sbjct: 79 SVYVGNVDYGATAEEIEQHFHGCGSVSRVTIQCDRFSGHPKGFAYVEFTE 128
>U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical
protein EEED8.4 protein.
Length = 191
Score = 42.7 bits (96), Expect = 1e-04
Identities = 14/48 (29%), Positives = 32/48 (66%)
Frame = +2
Query: 104 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
S+ + N+ + +T E++ F+ CG++ IP+D++T++ + FA++ F
Sbjct: 56 SVFIGNVDFNSTIEEIEEHFKGCGQIVKTTIPKDKFTKKQKNFAYIEF 103
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 41.9 bits (94), Expect = 2e-04
Identities = 21/50 (42%), Positives = 28/50 (56%)
Frame = +2
Query: 104 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFE 253
S+ V N+ Y+ T E++ F G V ++ I DR T RGFAFV F E
Sbjct: 7 SVYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSE 56
>U23484-10|AAC46772.1| 197|Caenorhabditis elegans Hypothetical
protein EEED8.12 protein.
Length = 197
Score = 41.1 bits (92), Expect = 3e-04
Identities = 14/48 (29%), Positives = 31/48 (64%)
Frame = +2
Query: 104 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
S+ + N+ + +T E++ F+ CG + IP+D++T++ + FA++ F
Sbjct: 62 SVFIGNVDFNSTIEEVEEHFKGCGHIVRTTIPKDKFTKKQKNFAYIEF 109
>Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical
protein C18D11.4 protein.
Length = 309
Score = 39.5 bits (88), Expect = 0.001
Identities = 22/51 (43%), Positives = 30/51 (58%)
Frame = +2
Query: 107 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFELV 259
L V NL+ TT +DLR VF GE+ + DR + SRGF F+ +F L+
Sbjct: 78 LGVFNLSSYTTEKDLRDVFGEFGEINKCDLVYDRPSGNSRGFGFI-YFNLI 127
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 39.5 bits (88), Expect = 0.001
Identities = 17/43 (39%), Positives = 27/43 (62%)
Frame = +2
Query: 119 NLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
NL Y T +DL+ +F++ GEV ++ + D+ T +GFA V F
Sbjct: 285 NLPYATKEDDLQFLFKKYGEVSEVQVVIDKKTGACKGFAIVEF 327
Score = 30.3 bits (65), Expect = 0.65
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 107 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIP-RDRYTRESRGFAFVRF 247
L V NL + + +++ +FE G V I IP + ++ RGF FV F
Sbjct: 750 LLVRNLPFEASVKEVETLFETFGAVKTIRIPKKPGQKQQHRGFGFVDF 797
>AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical
protein H28G03.1b protein.
Length = 315
Score = 39.5 bits (88), Expect = 0.001
Identities = 20/47 (42%), Positives = 26/47 (55%)
Frame = +2
Query: 107 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
L + L++ TT E L F + G V D + RD T+ SRGF FV F
Sbjct: 51 LFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTF 97
>AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical
protein H28G03.1c protein.
Length = 335
Score = 39.5 bits (88), Expect = 0.001
Identities = 20/47 (42%), Positives = 26/47 (55%)
Frame = +2
Query: 107 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
L + L++ TT E L F + G V D + RD T+ SRGF FV F
Sbjct: 71 LFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTF 117
>AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical
protein H28G03.1a protein.
Length = 336
Score = 39.5 bits (88), Expect = 0.001
Identities = 20/47 (42%), Positives = 26/47 (55%)
Frame = +2
Query: 107 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
L + L++ TT E L F + G V D + RD T+ SRGF FV F
Sbjct: 72 LFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTF 118
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 38.7 bits (86), Expect = 0.002
Identities = 19/46 (41%), Positives = 27/46 (58%)
Frame = +2
Query: 110 KVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
+V NL ++LR +F + G V I+I RD+ T +GFAFV F
Sbjct: 179 RVTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTF 224
>AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor
protein 12 protein.
Length = 248
Score = 37.5 bits (83), Expect = 0.004
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = +2
Query: 113 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFV 241
V L Y T+ + L FE+ G++ + + DR T++SRG+ FV
Sbjct: 39 VGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFV 81
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 37.5 bits (83), Expect = 0.004
Identities = 18/37 (48%), Positives = 24/37 (64%)
Frame = +2
Query: 143 EDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFE 253
+DLR FE+ G+V DI P D+ T+ R FAF+ F E
Sbjct: 124 QDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEE 160
Score = 34.7 bits (76), Expect = 0.030
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = +2
Query: 113 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
V ++ EDL F + GEV + DR SRGFAFV F
Sbjct: 33 VGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEF 77
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 37.5 bits (83), Expect = 0.004
Identities = 18/37 (48%), Positives = 24/37 (64%)
Frame = +2
Query: 143 EDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFE 253
+DLR FE+ G+V DI P D+ T+ R FAF+ F E
Sbjct: 124 QDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEE 160
Score = 34.7 bits (76), Expect = 0.030
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = +2
Query: 113 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
V ++ EDL F + GEV + DR SRGFAFV F
Sbjct: 33 VGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEF 77
>Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical
protein F26A3.2 protein.
Length = 154
Score = 36.7 bits (81), Expect = 0.007
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +2
Query: 104 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFF 250
+L V NL+Y T + + +F R G+V + + DR+ + GF FV ++
Sbjct: 38 TLYVGNLSYYTKEDQVYELFGRAGDVRRVIMGLDRFKKTPCGFCFVEYY 86
>Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 36.3 bits (80), Expect = 0.010
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = +2
Query: 134 TTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
TT EDL +F R G++ + I RDR + +S +AF+ F
Sbjct: 252 TTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEF 289
>Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 36.3 bits (80), Expect = 0.010
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = +2
Query: 134 TTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
TT EDL +F R G++ + I RDR + +S +AF+ F
Sbjct: 252 TTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEF 289
>Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical
protein F39H2.2b protein.
Length = 358
Score = 36.3 bits (80), Expect = 0.010
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = +2
Query: 134 TTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
TT EDL +F R G++ + I RDR + +S +AF+ F
Sbjct: 183 TTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEF 220
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 36.3 bits (80), Expect = 0.010
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +2
Query: 149 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
+R + + GE+ DI + RD T+ SRGF FV F
Sbjct: 1 MREFYSQFGEITDIIVMRDPTTKRSRGFGFVTF 33
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 36.3 bits (80), Expect = 0.010
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +2
Query: 149 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
+R + + GE+ DI + RD T+ SRGF FV F
Sbjct: 1 MREFYSQFGEITDIIVMRDPTTKRSRGFGFVTF 33
>U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene on
x protein 1 protein.
Length = 415
Score = 35.9 bits (79), Expect = 0.013
Identities = 20/50 (40%), Positives = 28/50 (56%)
Frame = +2
Query: 92 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFV 241
DG L V N+ +R DL+ +FE+ G V D+ I + R S+GF FV
Sbjct: 150 DGPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNE--RGSKGFGFV 197
Score = 27.1 bits (57), Expect = 6.0
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 250 RARDAEEALDTMDGRMLDGRELRVQMA 330
R +DAE A + G M++GR++ V A
Sbjct: 201 RPQDAERARQELHGSMIEGRKIEVNCA 227
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 35.9 bits (79), Expect = 0.013
Identities = 17/43 (39%), Positives = 28/43 (65%)
Frame = +2
Query: 113 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFV 241
+ L+Y + D+ VF + GEV +I + RD+ T +S+GFAF+
Sbjct: 42 IGGLSYALSEGDVIAVFSQYGEVMNINLIRDKDTGKSKGFAFL 84
>U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprotein
protein.
Length = 415
Score = 35.9 bits (79), Expect = 0.013
Identities = 20/50 (40%), Positives = 28/50 (56%)
Frame = +2
Query: 92 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFV 241
DG L V N+ +R DL+ +FE+ G V D+ I + R S+GF FV
Sbjct: 150 DGPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNE--RGSKGFGFV 197
Score = 27.1 bits (57), Expect = 6.0
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 250 RARDAEEALDTMDGRMLDGRELRVQMA 330
R +DAE A + G M++GR++ V A
Sbjct: 201 RPQDAERARQELHGSMIEGRKIEVNCA 227
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 35.1 bits (77), Expect = 0.023
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +2
Query: 101 VSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFF 250
+ + V + + D RR+FE+ G V I RD+ T+ S+G FV F+
Sbjct: 55 IKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFY 104
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 35.1 bits (77), Expect = 0.023
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +2
Query: 101 VSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFF 250
+ + V + + D RR+FE+ G V I RD+ T+ S+G FV F+
Sbjct: 55 IKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFY 104
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 35.1 bits (77), Expect = 0.023
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +2
Query: 101 VSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFF 250
+ + V + + D RR+FE+ G V I RD+ T+ S+G FV F+
Sbjct: 55 IKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFY 104
>EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA
binding protein variantD protein.
Length = 327
Score = 35.1 bits (77), Expect = 0.023
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +2
Query: 101 VSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFF 250
+ + V + + D RR+FE+ G V I RD+ T+ S+G FV F+
Sbjct: 55 IKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFY 104
>EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA
binding protein variantC protein.
Length = 378
Score = 35.1 bits (77), Expect = 0.023
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +2
Query: 101 VSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFF 250
+ + V + + D RR+FE+ G V I RD+ T+ S+G FV F+
Sbjct: 55 IKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFY 104
>EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA
binding protein variantB protein.
Length = 193
Score = 35.1 bits (77), Expect = 0.023
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +2
Query: 101 VSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFF 250
+ + V + + D RR+FE+ G V I RD+ T+ S+G FV F+
Sbjct: 55 IKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFY 104
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 35.1 bits (77), Expect = 0.023
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +2
Query: 101 VSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFF 250
+ + V + + D RR+FE+ G V I RD+ T+ S+G FV F+
Sbjct: 55 IKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFY 104
>AF040642-5|AAN73870.2| 138|Caenorhabditis elegans Hypothetical
protein C50D2.5 protein.
Length = 138
Score = 34.7 bits (76), Expect = 0.030
Identities = 20/63 (31%), Positives = 35/63 (55%)
Frame = +2
Query: 80 PPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFELV 259
PP ++ ++ +K NL Y+ T E++ +F + G V I + T E+RG AFV + ++
Sbjct: 14 PPEVNRILYIK--NLPYKITTEEMYEIFGKFGAVRQIRVGN---TAETRGTAFVVYEDIF 68
Query: 260 TLK 268
K
Sbjct: 69 DAK 71
>Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical
protein C17D12.2 protein.
Length = 514
Score = 34.3 bits (75), Expect = 0.040
Identities = 16/56 (28%), Positives = 30/56 (53%)
Frame = +2
Query: 80 PPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
P + + L V + +DLR +FE+ G++ + I +D+YT +G AF+ +
Sbjct: 22 PVKDPDAIKLFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDKYTGMHKGCAFLTY 77
>AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative
RNA-binding protein protein.
Length = 514
Score = 34.3 bits (75), Expect = 0.040
Identities = 16/56 (28%), Positives = 30/56 (53%)
Frame = +2
Query: 80 PPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
P + + L V + +DLR +FE+ G++ + I +D+YT +G AF+ +
Sbjct: 22 PVKDPDAIKLFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDKYTGMHKGCAFLTY 77
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 33.9 bits (74), Expect = 0.053
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = +2
Query: 92 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
+ +L ++ L T E++R +F GE+ + RD+ T +S G+ FV +
Sbjct: 39 ESKTNLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNY 90
Score = 32.7 bits (71), Expect = 0.12
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +2
Query: 56 LKMSYGRPP-PRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 232
+K+SY RP +I G +L V + T +L +F G++ I D T S+G
Sbjct: 113 IKVSYARPSNDQIKGS-NLYVSGIPKSMTLHELESIFRPFGQIITSRILSDNVTGLSKGV 171
Query: 233 AFVRF 247
FVRF
Sbjct: 172 GFVRF 176
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 33.5 bits (73), Expect = 0.070
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +2
Query: 113 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
V +L+ + E L+ F + GEV + + RD T++S+G+ FV F
Sbjct: 139 VGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSF 183
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 33.5 bits (73), Expect = 0.070
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +2
Query: 113 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
V +L+ + LR F+ G+V D + RD T +S+G+ FV +
Sbjct: 26 VGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSY 70
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 33.5 bits (73), Expect = 0.070
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +2
Query: 113 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
V +L+ + LR F+ G+V D + RD T +S+G+ FV +
Sbjct: 36 VGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSY 80
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 33.5 bits (73), Expect = 0.070
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +2
Query: 113 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
V +L+ + LR F+ G+V D + RD T +S+G+ FV +
Sbjct: 139 VGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSY 183
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 33.5 bits (73), Expect = 0.070
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +2
Query: 113 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
V +L+ + LR F+ G+V D + RD T +S+G+ FV +
Sbjct: 107 VGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSY 151
>AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3c protein.
Length = 435
Score = 33.5 bits (73), Expect = 0.070
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +2
Query: 104 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFE 253
+L + + T P DL F G V D+ I D T S+G +V F++
Sbjct: 26 TLLIMQIARDTRPRDLEEFFSAVGAVRDVRIITDSRTGRSKGICYVEFWD 75
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 33.5 bits (73), Expect = 0.070
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +2
Query: 104 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFE 253
+L + + T P DL F G V D+ I D T S+G +V F++
Sbjct: 171 TLLIMQIARDTRPRDLEEFFSAVGAVRDVRIITDSRTGRSKGICYVEFWD 220
>Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical
protein R74.5a protein.
Length = 404
Score = 32.7 bits (71), Expect = 0.12
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +2
Query: 92 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFV 241
DG L V N+ ++ DL +FE+ G V D+ I + R S+GF FV
Sbjct: 97 DGPRRLHVSNIPFKYREPDLTAMFEKVGPVVDVEIIFNE--RGSKGFGFV 144
>DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding
protein ASD-1 protein.
Length = 404
Score = 32.7 bits (71), Expect = 0.12
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +2
Query: 92 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFV 241
DG L V N+ ++ DL +FE+ G V D+ I + R S+GF FV
Sbjct: 97 DGPRRLHVSNIPFKYREPDLTAMFEKVGPVVDVEIIFNE--RGSKGFGFV 144
>Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical
protein F11A10.7 protein.
Length = 394
Score = 31.9 bits (69), Expect = 0.21
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +2
Query: 101 VSLKVDNLTYRTTPEDLRRVFE-RCGEVGDIYIPRDRYTRESRGFAFVRF 247
+++ V NL + T + L F + G V + I RD+ T + +GFAFV F
Sbjct: 246 MAIFVGNLPFEITEDALITFFSAQIGPVEAVRIVRDKDTGKGKGFAFVNF 295
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 31.1 bits (67), Expect = 0.37
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +2
Query: 104 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
+L V + Y T+ LRR FE G++ + + D + RG+AF+ +
Sbjct: 105 TLFVGRINYETSESKLRREFEAYGKIKKLTMVHDE-AGKPRGYAFIEY 151
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.9 bits (64), Expect = 0.86
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +2
Query: 104 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
++ V L + + L + + G V + +P+DR T +GF FV F
Sbjct: 14 TIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEF 61
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.9 bits (64), Expect = 0.86
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +2
Query: 104 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
++ V L + + L + + G V + +P+DR T +GF FV F
Sbjct: 24 TIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEF 71
>AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical
protein F58D5.1 protein.
Length = 611
Score = 29.9 bits (64), Expect = 0.86
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Frame = +2
Query: 68 YGRPPPRIDGMVS--------LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRES 223
+G PPP +G + + V ++ + L +FE+ G++ D+ + D + S
Sbjct: 181 FGGPPPDWEGPATGPAGQGHEIYVGHIPTDVFEDTLVPLFEKSGKIWDLRLMMDPMSGAS 240
Query: 224 RGFAFVRF 247
RG+AFV +
Sbjct: 241 RGYAFVTY 248
>AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical
protein Y116A8C.34 protein.
Length = 331
Score = 29.5 bits (63), Expect = 1.1
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = +2
Query: 104 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
+L V T T + L F G+V I IP D + + RGF FV F
Sbjct: 12 TLYVGGFTEDVTEKVLMAAFIPFGDVVAISIPMDYESGKHRGFGFVEF 59
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 29.1 bits (62), Expect = 1.5
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 256 RDAEEALDTMDGRMLDGRELRVQ 324
RDAE+A+ DG DGR +RV+
Sbjct: 57 RDAEDAVRARDGYEFDGRRIRVE 79
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 29.1 bits (62), Expect = 1.5
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 256 RDAEEALDTMDGRMLDGRELRVQ 324
RDAE+A+ DG DGR +RV+
Sbjct: 57 RDAEDAVRARDGYEFDGRRIRVE 79
>U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical
protein F25B5.7d protein.
Length = 374
Score = 28.7 bits (61), Expect = 2.0
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = +1
Query: 262 AEEALDTMDGRMLDGRELRVQMA 330
AE A + +DGR++ GR++RV+ A
Sbjct: 163 AESAKEAIDGRIIHGRQVRVRFA 185
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 28.7 bits (61), Expect = 2.0
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = +1
Query: 262 AEEALDTMDGRMLDGRELRVQMA 330
AE A + +DGR++ GR++RV+ A
Sbjct: 163 AESAKEAIDGRIIHGRQVRVRFA 185
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 28.3 bits (60), Expect = 2.6
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +2
Query: 146 DLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFELVT 262
DL+ VFE GE+ + R R RGF ++ F L +
Sbjct: 222 DLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTS 260
Score = 27.5 bits (58), Expect = 4.6
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +2
Query: 98 MVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
M + V ++++ + LRR F+ G + I + D T + FAFV +
Sbjct: 101 MSRIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEY 150
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 28.3 bits (60), Expect = 2.6
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +2
Query: 146 DLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFELVT 262
DL+ VFE GE+ + R R RGF ++ F L +
Sbjct: 222 DLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTS 260
Score = 27.5 bits (58), Expect = 4.6
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +2
Query: 98 MVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
M + V ++++ + LRR F+ G + I + D T + FAFV +
Sbjct: 101 MSRIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEY 150
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 28.3 bits (60), Expect = 2.6
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +2
Query: 146 DLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFELVT 262
DL+ VFE GE+ + R R RGF ++ F L +
Sbjct: 222 DLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTS 260
Score = 27.5 bits (58), Expect = 4.6
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +2
Query: 98 MVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
M + V ++++ + LRR F+ G + I + D T + FAFV +
Sbjct: 101 MSRIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEY 150
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 27.9 bits (59), Expect = 3.5
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +1
Query: 259 DAEEALDTMDGRMLDGRELRV 321
DAE ALDTM+ ++ GR +R+
Sbjct: 110 DAERALDTMNFEVIHGRPMRI 130
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 27.9 bits (59), Expect = 3.5
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +1
Query: 259 DAEEALDTMDGRMLDGRELRV 321
DAE ALDTM+ ++ GR +R+
Sbjct: 110 DAERALDTMNFEVIHGRPMRI 130
>AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin form A
protein.
Length = 4280
Score = 27.5 bits (58), Expect = 4.6
Identities = 17/47 (36%), Positives = 19/47 (40%)
Frame = -2
Query: 328 PSEREVPCRPTFVRPSCPGLLQRHELEKPHEGESSTFPCVPISGNVD 188
P VP + P P LQ E PH E S P P GN+D
Sbjct: 2706 PFSEWVPFTTSATNPPAPSDLQE-EATFPHAIEISWLPPTPPHGNID 2751
>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
protein.
Length = 4450
Score = 27.5 bits (58), Expect = 4.6
Identities = 17/47 (36%), Positives = 19/47 (40%)
Frame = -2
Query: 328 PSEREVPCRPTFVRPSCPGLLQRHELEKPHEGESSTFPCVPISGNVD 188
P VP + P P LQ E PH E S P P GN+D
Sbjct: 2706 PFSEWVPFTTSATNPPAPSDLQE-EATFPHAIEISWLPPTPPHGNID 2751
>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
805, isoform b protein.
Length = 4450
Score = 27.5 bits (58), Expect = 4.6
Identities = 17/47 (36%), Positives = 19/47 (40%)
Frame = -2
Query: 328 PSEREVPCRPTFVRPSCPGLLQRHELEKPHEGESSTFPCVPISGNVD 188
P VP + P P LQ E PH E S P P GN+D
Sbjct: 2706 PFSEWVPFTTSATNPPAPSDLQE-EATFPHAIEISWLPPTPPHGNID 2751
>AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protein
805, isoform a protein.
Length = 4280
Score = 27.5 bits (58), Expect = 4.6
Identities = 17/47 (36%), Positives = 19/47 (40%)
Frame = -2
Query: 328 PSEREVPCRPTFVRPSCPGLLQRHELEKPHEGESSTFPCVPISGNVD 188
P VP + P P LQ E PH E S P P GN+D
Sbjct: 2706 PFSEWVPFTTSATNPPAPSDLQE-EATFPHAIEISWLPPTPPHGNID 2751
>U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform b protein.
Length = 166
Score = 27.1 bits (57), Expect = 6.0
Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
Frame = +1
Query: 253 ARDAEEALDTMDGRMLDGRELR--VQMA 330
+RDAE+A +DG+ ++G +R V+MA
Sbjct: 45 SRDAEDACHDLDGKTMEGSSMRLVVEMA 72
>U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform d protein.
Length = 208
Score = 27.1 bits (57), Expect = 6.0
Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
Frame = +1
Query: 253 ARDAEEALDTMDGRMLDGRELR--VQMA 330
+RDAE+A +DG+ ++G +R V+MA
Sbjct: 45 SRDAEDACHDLDGKTMEGSSMRLVVEMA 72
>U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform a protein.
Length = 208
Score = 27.1 bits (57), Expect = 6.0
Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
Frame = +1
Query: 253 ARDAEEALDTMDGRMLDGRELR--VQMA 330
+RDAE+A +DG+ ++G +R V+MA
Sbjct: 45 SRDAEDACHDLDGKTMEGSSMRLVVEMA 72
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,007,334
Number of Sequences: 27780
Number of extensions: 177421
Number of successful extensions: 590
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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