Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0320
(440 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 68 3e-12
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 68 3e-12
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 58 2e-09
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 58 3e-09
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 58 3e-09
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 53 7e-08
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 50 7e-07
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 47 5e-06
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 45 2e-05
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 45 2e-05
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 44 3e-05
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 44 3e-05
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 43 8e-05
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 43 8e-05
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 43 8e-05
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 43 1e-04
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 42 2e-04
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 42 2e-04
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 42 2e-04
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 42 2e-04
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 42 2e-04
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 42 2e-04
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 42 2e-04
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 42 2e-04
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 42 2e-04
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 42 2e-04
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 41 3e-04
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 41 4e-04
At2g47310.1 68415.m05906 flowering time control protein-related ... 41 4e-04
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 41 4e-04
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 40 6e-04
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 40 6e-04
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 40 0.001
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 40 0.001
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 39 0.001
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 39 0.001
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 39 0.001
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 39 0.001
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 39 0.001
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 39 0.002
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 39 0.002
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 39 0.002
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 38 0.002
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 38 0.002
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 38 0.002
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 38 0.003
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 38 0.003
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 38 0.004
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 37 0.005
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 37 0.005
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 37 0.005
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 37 0.005
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 37 0.007
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 37 0.007
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 36 0.009
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 36 0.009
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 36 0.009
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 36 0.009
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 36 0.009
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 36 0.009
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 36 0.009
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 36 0.009
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 36 0.009
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 36 0.009
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 36 0.012
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 36 0.012
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 36 0.016
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 36 0.016
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 36 0.016
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 36 0.016
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 36 0.016
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 36 0.016
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 35 0.021
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 35 0.021
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 35 0.021
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 35 0.021
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 35 0.021
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 35 0.021
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 35 0.021
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 35 0.028
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 35 0.028
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 35 0.028
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 35 0.028
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 35 0.028
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 34 0.037
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 34 0.049
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 34 0.049
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 34 0.049
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 34 0.049
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 33 0.065
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 33 0.065
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 33 0.085
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 33 0.11
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 32 0.20
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 32 0.20
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 32 0.20
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 32 0.20
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 31 0.26
At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing ... 31 0.26
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 31 0.26
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 31 0.26
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 31 0.26
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 31 0.26
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 31 0.26
At4g28490.1 68417.m04076 leucine-rich repeat transmembrane prote... 31 0.34
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 31 0.34
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 31 0.34
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 31 0.46
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 31 0.46
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 30 0.60
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 30 0.60
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 30 0.60
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 30 0.80
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 30 0.80
At1g47620.1 68414.m05289 cytochrome P450, putative similar to cy... 30 0.80
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 29 1.1
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 29 1.1
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 29 1.1
At1g67770.1 68414.m07733 RNA-binding protein, putative similar t... 29 1.1
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 29 1.1
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 29 1.4
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 29 1.4
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 29 1.4
At3g09160.1 68416.m01082 RNA recognition motif (RRM)-containing ... 29 1.4
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 29 1.4
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 29 1.8
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 29 1.8
At5g03480.1 68418.m00304 expressed protein ; expression support... 29 1.8
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 29 1.8
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 29 1.8
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 29 1.8
At5g51300.2 68418.m06360 splicing factor-related contains simila... 28 2.4
At5g51300.1 68418.m06359 splicing factor-related contains simila... 28 2.4
At4g08750.1 68417.m01443 RNA recognition motif (RRM)-containing ... 28 2.4
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 28 2.4
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 28 2.4
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 28 2.4
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 28 2.4
At2g37150.2 68415.m04558 zinc finger (C3HC4-type RING finger) fa... 28 2.4
At2g37150.1 68415.m04557 zinc finger (C3HC4-type RING finger) fa... 28 2.4
At5g37720.1 68418.m04541 RNA and export factor-binding protein, ... 28 3.2
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 27 4.2
At3g49150.1 68416.m05372 F-box family protein contains F-box dom... 27 4.2
At3g26120.1 68416.m03257 RNA-binding protein, putative similar t... 27 5.6
At3g44530.1 68416.m04786 transducin family protein / WD-40 repea... 27 7.4
At1g37140.1 68414.m04640 RNA-binding protein, putative similar t... 27 7.4
At5g49290.1 68418.m06100 leucine-rich repeat family protein cont... 26 9.8
At5g47020.1 68418.m05795 glycine-rich protein strong similarity ... 26 9.8
At5g06400.1 68418.m00716 pentatricopeptide (PPR) repeat-containi... 26 9.8
At5g03500.1 68418.m00306 transcriptional co-activator-related lo... 26 9.8
At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing ... 26 9.8
At3g62210.1 68416.m06989 expressed protein contains Pfam profile... 26 9.8
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 26 9.8
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 26 9.8
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 67.7 bits (158), Expect = 3e-12
Identities = 33/61 (54%), Positives = 44/61 (72%), Gaps = 1/61 (1%)
Frame = +2
Query: 68 YGRP-PPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVR 244
+GR PP I SL V N+T+RTT +DL +F + G+V D++IPRDR T +SRGFAFVR
Sbjct: 4 FGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVR 63
Query: 245 F 247
+
Sbjct: 64 Y 64
Score = 32.3 bits (70), Expect = 0.15
Identities = 12/24 (50%), Positives = 20/24 (83%)
Frame = +1
Query: 259 DAEEALDTMDGRMLDGRELRVQMA 330
+A +A++ +DGR++DGRE+ VQ A
Sbjct: 69 EAHKAVERLDGRVVDGREITVQFA 92
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 67.7 bits (158), Expect = 3e-12
Identities = 33/61 (54%), Positives = 44/61 (72%), Gaps = 1/61 (1%)
Frame = +2
Query: 68 YGRP-PPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVR 244
+GR PP I SL V N+T+RTT +DL +F + G+V D++IPRDR T +SRGFAFVR
Sbjct: 4 FGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVR 63
Query: 245 F 247
+
Sbjct: 64 Y 64
Score = 32.3 bits (70), Expect = 0.15
Identities = 12/24 (50%), Positives = 20/24 (83%)
Frame = +1
Query: 259 DAEEALDTMDGRMLDGRELRVQMA 330
+A +A++ +DGR++DGRE+ VQ A
Sbjct: 69 EAHKAVERLDGRVVDGREITVQFA 92
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 58.4 bits (135), Expect = 2e-09
Identities = 27/50 (54%), Positives = 34/50 (68%)
Frame = +2
Query: 104 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFE 253
SL V NL + EDLRR FE+ G V DIY+PRD YT + RGF F++F +
Sbjct: 38 SLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMD 87
Score = 26.6 bits (56), Expect = 7.4
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = +1
Query: 259 DAEEALDTMDGRMLDGRELRVQMA 330
DA EA MDG +L GREL V A
Sbjct: 90 DAAEAKHQMDGYLLLGRELTVVFA 113
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 57.6 bits (133), Expect = 3e-09
Identities = 27/50 (54%), Positives = 33/50 (66%)
Frame = +2
Query: 104 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFE 253
SL V N+ PE+LR FER G V D+YIPRD Y+ + RGFAFV F +
Sbjct: 48 SLLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVD 97
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 57.6 bits (133), Expect = 3e-09
Identities = 27/50 (54%), Positives = 34/50 (68%)
Frame = +2
Query: 104 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFE 253
SL V NL + EDLR+ FE+ G V DIY+PRD YT + RGF FV+F +
Sbjct: 37 SLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMD 86
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 53.2 bits (122), Expect = 7e-08
Identities = 25/51 (49%), Positives = 31/51 (60%)
Frame = +2
Query: 95 GMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
G L + NL P DLR FER G + DIY+PR+ YT E RGF FV++
Sbjct: 45 GPSGLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKY 95
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 50.0 bits (114), Expect = 7e-07
Identities = 22/50 (44%), Positives = 33/50 (66%)
Frame = +2
Query: 113 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFELVT 262
V NLT+RTT +DLRR FE+ G+V D + + Y S+G+ F+ F + V+
Sbjct: 16 VGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVS 65
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 47.2 bits (107), Expect = 5e-06
Identities = 24/58 (41%), Positives = 33/58 (56%)
Frame = +2
Query: 83 PRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFEL 256
P+ + +L V L+ RTT E LR F + GEV D + DR + S+GF FVR+ L
Sbjct: 50 PQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATL 107
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 45.2 bits (102), Expect = 2e-05
Identities = 21/46 (45%), Positives = 30/46 (65%)
Frame = +2
Query: 104 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFV 241
SL V L++R T DL F + G+V D+++ D +TRESRGF F+
Sbjct: 46 SLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFI 91
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 45.2 bits (102), Expect = 2e-05
Identities = 21/46 (45%), Positives = 30/46 (65%)
Frame = +2
Query: 104 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFV 241
SL V L++R T DL F + G+V D+++ D +TRESRGF F+
Sbjct: 76 SLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFI 121
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 44.4 bits (100), Expect = 3e-05
Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +2
Query: 68 YGRPPPRIDGMVS-LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVR 244
YGR P G+ + + V L + +DLR F R G + D YIP+D RGF FV
Sbjct: 228 YGRGEPTTRGIGNKIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVT 287
Query: 245 FFE 253
F E
Sbjct: 288 FAE 290
Score = 39.9 bits (89), Expect = 7e-04
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = +2
Query: 146 DLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
D R FER GE+ D+Y+P+D +++ RG F+ F
Sbjct: 106 DFRSHFERYGEITDLYMPKDYNSKQHRGIGFITF 139
Score = 29.5 bits (63), Expect = 1.1
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 143 EDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
+ L+ + G++ D + +DR T SRGF +V F
Sbjct: 17 DGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTF 51
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 44.4 bits (100), Expect = 3e-05
Identities = 22/45 (48%), Positives = 26/45 (57%)
Frame = +2
Query: 113 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
V NL+ TT + LR F G V D + RDRYT SRGF FV +
Sbjct: 7 VGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTY 51
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 43.2 bits (97), Expect = 8e-05
Identities = 21/69 (30%), Positives = 39/69 (56%)
Frame = +2
Query: 59 KMSYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAF 238
K S G P +DG + + NL + TT D+R++F C + + + +++ T E +G+A
Sbjct: 248 KTSSGFAPEMVDGYNRVYIGNLAWDTTERDIRKLFSDC-VINSVRLGKNKETGEFKGYAH 306
Query: 239 VRFFELVTL 265
V F + V++
Sbjct: 307 VDFKDSVSV 315
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 43.2 bits (97), Expect = 8e-05
Identities = 19/48 (39%), Positives = 30/48 (62%)
Frame = +2
Query: 104 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
+L V NL + T D+ +F G+V + + +DR+TR+SRG AFV +
Sbjct: 58 TLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLY 105
Score = 26.2 bits (55), Expect = 9.8
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +1
Query: 259 DAEEALDTMDGRMLDGRELRVQMA 330
DA +A +MD ++L+GR+L V +A
Sbjct: 110 DAAKAARSMDAKILNGRKLTVSIA 133
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 43.2 bits (97), Expect = 8e-05
Identities = 19/47 (40%), Positives = 30/47 (63%)
Frame = +2
Query: 107 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
L + NL ++ P D++ VF G V D++IP++ T +GFAFV+F
Sbjct: 333 LIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKF 379
Score = 32.7 bits (71), Expect = 0.11
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +2
Query: 113 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
V L Y T L F G V ++ ++ + E RGFAFV+F
Sbjct: 24 VSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKF 68
Score = 31.5 bits (68), Expect = 0.26
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +2
Query: 104 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
+L + NL + T E++++ F GEV + + + T+ G AFV+F
Sbjct: 562 TLFIRNLPFDVTKEEVKQRFTVFGEVESLSLVLHKVTKRPEGTAFVKF 609
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 42.7 bits (96), Expect = 1e-04
Identities = 19/51 (37%), Positives = 33/51 (64%)
Frame = +2
Query: 104 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFEL 256
S+ V N+ Y TPE++++ F+ CG V + I D++ + +GFA+V F E+
Sbjct: 104 SIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEV 153
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 41.5 bits (93), Expect = 2e-04
Identities = 19/56 (33%), Positives = 36/56 (64%)
Frame = +2
Query: 104 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFELVTLKK 271
S+ V N+ Y TPE++++ F+ CG V + I D++ + +GFA+V F E+ +++
Sbjct: 93 SVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKF-GQPKGFAYVEFVEVEAVQE 147
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 41.5 bits (93), Expect = 2e-04
Identities = 19/56 (33%), Positives = 35/56 (62%)
Frame = +2
Query: 104 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFELVTLKK 271
S+ V N+ Y TPE+++ F+ CG V + I D++ + +GFA+V F E+ +++
Sbjct: 90 SVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKF-GQPKGFAYVEFVEVEAVQE 144
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 41.5 bits (93), Expect = 2e-04
Identities = 19/56 (33%), Positives = 35/56 (62%)
Frame = +2
Query: 104 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFELVTLKK 271
S+ V N+ Y TPE+++ F+ CG V + I D++ + +GFA+V F E+ +++
Sbjct: 90 SVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKF-GQPKGFAYVEFVEVEAVQE 144
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 41.5 bits (93), Expect = 2e-04
Identities = 21/45 (46%), Positives = 26/45 (57%)
Frame = +2
Query: 113 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
V L + T EDL+R F + G+V D I DR + SRGF FV F
Sbjct: 10 VGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTF 54
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 41.5 bits (93), Expect = 2e-04
Identities = 21/45 (46%), Positives = 26/45 (57%)
Frame = +2
Query: 113 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
V L + T EDL+R F + G+V D I DR + SRGF FV F
Sbjct: 10 VGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTF 54
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 41.5 bits (93), Expect = 2e-04
Identities = 21/45 (46%), Positives = 26/45 (57%)
Frame = +2
Query: 113 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
V L + T EDL+R F + G+V D I DR + SRGF FV F
Sbjct: 10 VGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTF 54
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 41.5 bits (93), Expect = 2e-04
Identities = 21/45 (46%), Positives = 26/45 (57%)
Frame = +2
Query: 113 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
V L + T EDL+R F + G+V D I DR + SRGF FV F
Sbjct: 10 VGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTF 54
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 41.5 bits (93), Expect = 2e-04
Identities = 24/58 (41%), Positives = 31/58 (53%)
Frame = +2
Query: 83 PRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFEL 256
P G L V NL + +DLR+VFE G V + +PRD T +GF FV+F L
Sbjct: 279 PYSGGARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDE-TGLCKGFGFVQFARL 335
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 41.5 bits (93), Expect = 2e-04
Identities = 22/63 (34%), Positives = 34/63 (53%)
Frame = +2
Query: 65 SYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVR 244
SY R P + V L + T +++RR FE+ GE+ + I D+ T +S+G+ FV
Sbjct: 5 SYYRSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVT 64
Query: 245 FFE 253
F E
Sbjct: 65 FRE 67
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 41.5 bits (93), Expect = 2e-04
Identities = 22/63 (34%), Positives = 34/63 (53%)
Frame = +2
Query: 65 SYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVR 244
SY R P + V L + T +++RR FE+ GE+ + I D+ T +S+G+ FV
Sbjct: 5 SYYRSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVT 64
Query: 245 FFE 253
F E
Sbjct: 65 FRE 67
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 41.1 bits (92), Expect = 3e-04
Identities = 16/33 (48%), Positives = 24/33 (72%)
Frame = +2
Query: 143 EDLRRVFERCGEVGDIYIPRDRYTRESRGFAFV 241
++LR F +CGEV +++P DR T SRGFA++
Sbjct: 497 KELRSHFSKCGEVTRVHVPTDRETGASRGFAYI 529
Score = 26.2 bits (55), Expect = 9.8
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 95 GMVSLKVDNLTYRTTPEDLRRVFERCGEVGDI 190
G +L NL+Y+ D+ F+ GEV D+
Sbjct: 382 GSKTLFAGNLSYQIARSDIENFFKEAGEVVDV 413
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 40.7 bits (91), Expect = 4e-04
Identities = 20/45 (44%), Positives = 25/45 (55%)
Frame = +2
Query: 107 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFV 241
L V NL Y T +L ++F G V D+ I D+ T SRGF FV
Sbjct: 118 LYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFV 162
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 40.7 bits (91), Expect = 4e-04
Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Frame = +2
Query: 92 DGMVS-LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
DG ++ L V ++ T D+R+VFE+ G V +I +P+D+ T E + F+++
Sbjct: 106 DGSIAKLYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKMTGERAAYCFIKY 158
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 40.7 bits (91), Expect = 4e-04
Identities = 22/45 (48%), Positives = 25/45 (55%)
Frame = +2
Query: 113 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
V ++Y T LR F + GEV D I DR T SRGFAFV F
Sbjct: 38 VGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTF 82
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 40.3 bits (90), Expect = 6e-04
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = +2
Query: 107 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
L + L++ TT + L F +CG+V + I DR + S+GF FV F
Sbjct: 36 LFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTF 82
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 40.3 bits (90), Expect = 6e-04
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +2
Query: 47 SILLKMSYGRPPPRIDG-MVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRES 223
S L S PP G L V L++RTT + LR FE+ G + + + D+
Sbjct: 58 SCLSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRP 117
Query: 224 RGFAFVRF 247
+GFAF+R+
Sbjct: 118 KGFAFLRY 125
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 39.5 bits (88), Expect = 0.001
Identities = 15/47 (31%), Positives = 30/47 (63%)
Frame = +2
Query: 107 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
+ V NL + T+ + L+R F GE+ ++ + +D + S+G+AF++F
Sbjct: 42 IMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQF 88
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 39.5 bits (88), Expect = 0.001
Identities = 20/48 (41%), Positives = 27/48 (56%)
Frame = +2
Query: 104 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
S++V NL+ T DL +F G V +Y+ D+ T SRGF FV F
Sbjct: 214 SVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNF 261
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 39.1 bits (87), Expect = 0.001
Identities = 17/46 (36%), Positives = 27/46 (58%)
Frame = +2
Query: 113 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFF 250
+ N+++ TT E L +F R GE+ I + D+ T+ GF FV F+
Sbjct: 38 IGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFY 83
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 39.1 bits (87), Expect = 0.001
Identities = 18/47 (38%), Positives = 30/47 (63%)
Frame = +2
Query: 107 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
L V +L + T +++ +F + G V D+Y+ RD Y R+SRG FV++
Sbjct: 213 LFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEY-RQSRGCGFVKY 258
Score = 32.7 bits (71), Expect = 0.11
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = +2
Query: 101 VSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
V L V ++ T E++R FE+ G V ++ + +D+ T + +G FV++
Sbjct: 120 VKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKY 168
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 39.1 bits (87), Expect = 0.001
Identities = 18/47 (38%), Positives = 30/47 (63%)
Frame = +2
Query: 107 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
L V +L + T +++ +F + G V D+Y+ RD Y R+SRG FV++
Sbjct: 213 LFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEY-RQSRGCGFVKY 258
Score = 32.7 bits (71), Expect = 0.11
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = +2
Query: 101 VSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
V L V ++ T E++R FE+ G V ++ + +D+ T + +G FV++
Sbjct: 120 VKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKY 168
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 39.1 bits (87), Expect = 0.001
Identities = 19/53 (35%), Positives = 33/53 (62%)
Frame = +2
Query: 113 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFELVTLKK 271
V +L + EDL++VF GEV ++ I ++ T++S+G AF+RF + K+
Sbjct: 218 VGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKR 270
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 39.1 bits (87), Expect = 0.001
Identities = 20/61 (32%), Positives = 33/61 (54%)
Frame = +2
Query: 65 SYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVR 244
SY R P + V L + T +++RR F++ GE+ + I D+ T +S+G+ FV
Sbjct: 5 SYYRSPFGDTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVT 64
Query: 245 F 247
F
Sbjct: 65 F 65
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 38.7 bits (86), Expect = 0.002
Identities = 18/50 (36%), Positives = 29/50 (58%)
Frame = +2
Query: 107 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFEL 256
L V NL + + LR++FE G V + +P D T + +GF F++F +L
Sbjct: 267 LYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQL 316
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 38.7 bits (86), Expect = 0.002
Identities = 19/45 (42%), Positives = 24/45 (53%)
Frame = +2
Query: 113 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
V L+ T DL R F R G++ D I +R T SRGF F+ F
Sbjct: 11 VGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITF 55
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 38.7 bits (86), Expect = 0.002
Identities = 21/55 (38%), Positives = 27/55 (49%)
Frame = +2
Query: 107 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFELVTLKK 271
L V +++ TT E F + GEV D I DR T RGF FV F + +K
Sbjct: 68 LFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEK 122
Score = 27.5 bits (58), Expect = 4.2
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 143 EDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
++L+ F G++ + I D +T SRGF FV F
Sbjct: 171 DELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTF 205
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 38.3 bits (85), Expect = 0.002
Identities = 19/47 (40%), Positives = 24/47 (51%)
Frame = +2
Query: 107 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
L + + Y + LR F + GEV D + DR T SRGF FV F
Sbjct: 42 LFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTF 88
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 38.3 bits (85), Expect = 0.002
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = +2
Query: 98 MVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFE 253
+ + V L + T + +RR FE+ GE+ + + D+ T S+G+ FV F E
Sbjct: 21 LTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKE 72
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 38.3 bits (85), Expect = 0.002
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +2
Query: 113 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
V L+ TT E+ + FER G D+ + D T RGF FV +
Sbjct: 124 VGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTY 168
Score = 36.3 bits (80), Expect = 0.009
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = +2
Query: 107 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
L V + T+ E L++ F R G V + + +++ T + RGF FVRF
Sbjct: 8 LFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRF 54
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 37.9 bits (84), Expect = 0.003
Identities = 17/45 (37%), Positives = 28/45 (62%)
Frame = +2
Query: 113 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
V + + T DL VF + GE+ D+ + RD+ T +S+GFAF+ +
Sbjct: 40 VGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAY 84
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 37.9 bits (84), Expect = 0.003
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Frame = +2
Query: 8 NIVLFNLFDLS*ISILLKMSYG-RPPPRIDGMV-----SLKVDNLTYRTTPEDLRRVFER 169
NI++ NL + LK+++ +P P + + L V NL++ T E L F
Sbjct: 140 NIIIDNLDGTEYLGRALKVNFADKPKPNKEPLYPETEHKLFVGNLSWTVTSESLAGAFRE 199
Query: 170 CGEVGDIYIPRDRYTRESRGFAFV 241
CG+V + D T SRG+ FV
Sbjct: 200 CGDVVGARVVFDGDTGRSRGYGFV 223
Score = 27.5 bits (58), Expect = 4.2
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +1
Query: 259 DAEEALDTMDGRMLDGRELRVQMA 330
+ E AL+++DG L+GR +RV +A
Sbjct: 230 EMETALESLDGFELEGRAIRVNLA 253
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 37.5 bits (83), Expect = 0.004
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +2
Query: 107 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFEL 256
L V L E LR F + + D+ + RD++T SRGFAFV F+ +
Sbjct: 460 LVVRGLDEDADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSV 509
Score = 33.1 bits (72), Expect = 0.085
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +2
Query: 113 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
V L+ ++T EDL ++ G + + + R++ + SRGFAF+ F
Sbjct: 302 VKGLSMKSTEEDLYQILAEWGPLHHVRVIREQNSGISRGFAFIDF 346
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 37.1 bits (82), Expect = 0.005
Identities = 21/57 (36%), Positives = 27/57 (47%)
Frame = +2
Query: 74 RPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVR 244
R P D + V NL + L R+F G+V D + DR T SRGF FV+
Sbjct: 198 RQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQ 254
Score = 31.5 bits (68), Expect = 0.26
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = +2
Query: 107 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFV 241
L V NL Y + L +FE+ G V + +R T +SRGF FV
Sbjct: 115 LFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFV 159
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 37.1 bits (82), Expect = 0.005
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = +2
Query: 89 IDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFELVTLK 268
+D + V L TT + + F + GE+ D I +DR T + RGF FV + + +
Sbjct: 38 VDSAGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVD 97
Query: 269 K 271
K
Sbjct: 98 K 98
Score = 29.5 bits (63), Expect = 1.1
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 143 EDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
++ + F + GE+ + I RD T SRGF FV +
Sbjct: 144 DEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTY 178
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 37.1 bits (82), Expect = 0.005
Identities = 20/51 (39%), Positives = 28/51 (54%)
Frame = +2
Query: 104 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFEL 256
+L V L+ R T +DL F + G+V ++ + TR SRGFAFV L
Sbjct: 73 TLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSL 123
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 37.1 bits (82), Expect = 0.005
Identities = 20/51 (39%), Positives = 28/51 (54%)
Frame = +2
Query: 104 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFEL 256
+L V L+ R T +DL F + G+V ++ + TR SRGFAFV L
Sbjct: 72 TLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSL 122
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 36.7 bits (81), Expect = 0.007
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +2
Query: 113 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
V L + T E LR+ FE+ GE+ + + D+ T S+G+ FV F
Sbjct: 28 VGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTF 72
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 36.7 bits (81), Expect = 0.007
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +2
Query: 149 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFE 253
LR F CGE+ ++ +P DR T S+G A++ F E
Sbjct: 421 LREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEFSE 455
Score = 32.3 bits (70), Expect = 0.15
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = +2
Query: 83 PRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
P G +L NL++ D+ F+ GEV D+ +R RGF V F
Sbjct: 291 PAAGGSKTLFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEF 345
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 36.3 bits (80), Expect = 0.009
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +2
Query: 107 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
L + +++ T E LR F G+V + I RDR T +RGF F+ F
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVF 54
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 36.3 bits (80), Expect = 0.009
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +2
Query: 107 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
L + +++ T E LR F G+V + I RDR T +RGF F+ F
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVF 54
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 36.3 bits (80), Expect = 0.009
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +2
Query: 107 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
L + +++ T E LR F G+V + I RDR T +RGF F+ F
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVF 54
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 36.3 bits (80), Expect = 0.009
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = +2
Query: 107 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
L + +++ T+ + LR F GEV + I +DR T +RGF FV F
Sbjct: 8 LFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVF 54
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 36.3 bits (80), Expect = 0.009
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = +2
Query: 107 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
L + +++ T+ + LR F GEV + I +DR T +RGF FV F
Sbjct: 8 LFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVF 54
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 36.3 bits (80), Expect = 0.009
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = +2
Query: 107 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
L V +++ T + LR F GEV + RD+ T RGF FV F
Sbjct: 8 LFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIF 54
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 36.3 bits (80), Expect = 0.009
Identities = 15/35 (42%), Positives = 25/35 (71%)
Frame = +2
Query: 143 EDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
EDLR + E GE+ ++ + +DR + +S+G+AFV F
Sbjct: 130 EDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAF 164
Score = 31.5 bits (68), Expect = 0.26
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +2
Query: 104 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFE 253
+L V N+ T+ E L+ +F+R GEV I P + + R F FV + E
Sbjct: 293 ALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGGK--RDFGFVHYAE 340
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 36.3 bits (80), Expect = 0.009
Identities = 19/47 (40%), Positives = 25/47 (53%)
Frame = +2
Query: 107 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
L V L++ T L++ F GEV + + DR T SRGF FV F
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSF 83
Score = 28.3 bits (60), Expect = 2.4
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +1
Query: 262 AEEALDTMDGRMLDGRELRVQMA 330
A A+ MDG+ L+GR++RV +A
Sbjct: 89 ANNAIKEMDGKELNGRQIRVNLA 111
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 36.3 bits (80), Expect = 0.009
Identities = 19/47 (40%), Positives = 25/47 (53%)
Frame = +2
Query: 107 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
L V L++ T L++ F GEV + + DR T SRGF FV F
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSF 83
Score = 28.3 bits (60), Expect = 2.4
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +1
Query: 262 AEEALDTMDGRMLDGRELRVQMA 330
A A+ MDG+ L+GR++RV +A
Sbjct: 89 ANNAIKEMDGKELNGRQIRVNLA 111
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 36.3 bits (80), Expect = 0.009
Identities = 15/47 (31%), Positives = 30/47 (63%)
Frame = +2
Query: 107 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
L + L++ T+ + LR FE GE+ ++ I D+ ++ S+G+AF+ +
Sbjct: 284 LFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEY 330
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 35.9 bits (79), Expect = 0.012
Identities = 19/45 (42%), Positives = 23/45 (51%)
Frame = +2
Query: 113 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
V L + T + + R F GEV D I DR T S+GF FV F
Sbjct: 48 VGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTF 92
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 35.9 bits (79), Expect = 0.012
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = +2
Query: 113 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
V L + T E LRR F++ G++ + + D+ T S+G+ FV F
Sbjct: 28 VGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTF 72
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 35.5 bits (78), Expect = 0.016
Identities = 19/48 (39%), Positives = 26/48 (54%)
Frame = +2
Query: 104 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
S++V NL+ T DL +F G V ++ D+ T SRGF FV F
Sbjct: 175 SVRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSF 222
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 35.5 bits (78), Expect = 0.016
Identities = 19/47 (40%), Positives = 24/47 (51%)
Frame = +2
Query: 107 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
L + L++ T LR F G+V D + DR T SRGF FV F
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNF 83
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 35.5 bits (78), Expect = 0.016
Identities = 19/47 (40%), Positives = 24/47 (51%)
Frame = +2
Query: 107 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
L + L++ T LR F G+V D + DR T SRGF FV F
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNF 83
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 35.5 bits (78), Expect = 0.016
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +2
Query: 113 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFE 253
+ L + T+ LR FE+ G + + + D+++ SRGF F+ F E
Sbjct: 11 IGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDE 57
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 35.5 bits (78), Expect = 0.016
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +2
Query: 107 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
L + +++ T E L+ F GEV + I +DR T +RGF FV F
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVF 54
Score = 32.3 bits (70), Expect = 0.15
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +2
Query: 113 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
V L T D + FE+ G D+ + D T+ RGF F+ +
Sbjct: 112 VGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITY 156
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 35.5 bits (78), Expect = 0.016
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +2
Query: 107 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
L + +++ T E L+ F GEV + I +DR T +RGF FV F
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVF 54
Score = 32.3 bits (70), Expect = 0.15
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +2
Query: 113 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
V L T D + FE+ G D+ + D T+ RGF F+ +
Sbjct: 112 VGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITY 156
>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 173
Score = 35.1 bits (77), Expect = 0.021
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +2
Query: 113 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
+ N+ R + L + + G V D++IPRD+ T + +GFAF +
Sbjct: 11 IGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEY 55
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 35.1 bits (77), Expect = 0.021
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +2
Query: 134 TTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
TT + F + GE+ D I RDR+T + RGF F+ F
Sbjct: 30 TTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITF 67
Score = 32.3 bits (70), Expect = 0.15
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +2
Query: 113 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
V + T ++L+ F + G V + + RD T SRGF FV F
Sbjct: 113 VGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIF 157
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 35.1 bits (77), Expect = 0.021
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +2
Query: 134 TTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
TT + F + GE+ D I RDR+T + RGF F+ F
Sbjct: 30 TTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITF 67
Score = 32.3 bits (70), Expect = 0.15
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +2
Query: 113 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
V + T ++L+ F + G V + + RD T SRGF FV F
Sbjct: 113 VGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIF 157
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 35.1 bits (77), Expect = 0.021
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +2
Query: 107 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFE 253
L + L++ + L+ F GEV ++ I D+ + SRGF FV F E
Sbjct: 43 LFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAE 91
Score = 27.1 bits (57), Expect = 5.6
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +1
Query: 259 DAEEALDTMDGRMLDGRELRVQMA 330
DA A D MDG+ L GR LR+ A
Sbjct: 94 DALSAKDAMDGKGLLGRPLRISFA 117
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 35.1 bits (77), Expect = 0.021
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +2
Query: 113 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
V L + TT E+L+ FE GE+ + + D+ T ++GF FV F
Sbjct: 167 VRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLF 211
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 35.1 bits (77), Expect = 0.021
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = +2
Query: 113 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
V L + TT E L VFE GE+ + + D+ T +++GF FV F
Sbjct: 108 VYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMF 152
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 35.1 bits (77), Expect = 0.021
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = +2
Query: 113 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
V L + TT E L VFE GE+ + + D+ T +++GF FV F
Sbjct: 108 VYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMF 152
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 34.7 bits (76), Expect = 0.028
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = +2
Query: 107 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFV 241
L N+ + +TPED+R +FE+ G V DI + + R +RG F+
Sbjct: 96 LIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKER-NRGLVFI 139
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 34.7 bits (76), Expect = 0.028
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +2
Query: 101 VSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFV 241
+ L V NL++ L ++FE G V + + D+ T SRGF FV
Sbjct: 99 LKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFV 145
Score = 27.5 bits (58), Expect = 4.2
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +2
Query: 107 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFV 241
L V NL++ L +F G+V + + DR + S+GF FV
Sbjct: 251 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFV 295
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 34.7 bits (76), Expect = 0.028
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +2
Query: 101 VSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFV 241
+ L V NL++ L ++FE G V + + D+ T SRGF FV
Sbjct: 99 LKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFV 145
Score = 27.5 bits (58), Expect = 4.2
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +2
Query: 107 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFV 241
L V NL++ L +F G+V + + DR + S+GF FV
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFV 303
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 34.7 bits (76), Expect = 0.028
Identities = 20/52 (38%), Positives = 25/52 (48%)
Frame = +2
Query: 113 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFELVTLK 268
V L + T L F + G+V D I DR T SRGF FV F + +K
Sbjct: 12 VGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMK 63
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 34.7 bits (76), Expect = 0.028
Identities = 20/52 (38%), Positives = 25/52 (48%)
Frame = +2
Query: 113 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFELVTLK 268
V L + T L F + G+V D I DR T SRGF FV F + +K
Sbjct: 12 VGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMK 63
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 34.3 bits (75), Expect = 0.037
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +2
Query: 107 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
L + +++ T E L+ F + G++ + I RDR T +RGF F+ F
Sbjct: 17 LFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVF 63
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 33.9 bits (74), Expect = 0.049
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +2
Query: 101 VSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFV 241
+ L V NL + L ++FE G V + + D+ T SRGF FV
Sbjct: 91 LKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFV 137
Score = 27.5 bits (58), Expect = 4.2
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +1
Query: 253 ARDAEEALDTMDGRMLDGRELRVQMA 330
+++ + A+ ++DG LDGR++RV A
Sbjct: 255 SQEVQNAIKSLDGADLDGRQIRVSEA 280
Score = 27.1 bits (57), Expect = 5.6
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 113 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
V NL++ L +F G+V + + DR + S+GF FV +
Sbjct: 208 VGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTY 252
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 33.9 bits (74), Expect = 0.049
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = +2
Query: 113 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFE 253
V L + T E +++ FE+ GE+ + + D+ + S+G+ FV F E
Sbjct: 17 VGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFRE 63
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 33.9 bits (74), Expect = 0.049
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = +2
Query: 113 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFE 253
V L + T E +++ FE+ GE+ + + D+ + S+G+ FV F E
Sbjct: 17 VGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFRE 63
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 33.9 bits (74), Expect = 0.049
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = +2
Query: 113 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFE 253
V L + T E +++ FE+ GE+ + + D+ + S+G+ FV F E
Sbjct: 17 VGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFRE 63
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 33.5 bits (73), Expect = 0.065
Identities = 20/55 (36%), Positives = 27/55 (49%)
Frame = +2
Query: 92 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFEL 256
D + V L + T E L FER GE+ + D T+ S+GF FV F E+
Sbjct: 6 DRETKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREV 60
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 33.5 bits (73), Expect = 0.065
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +2
Query: 113 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
V L + T E L F+R GE+ + + DR T S+G+ FV F
Sbjct: 17 VGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTF 61
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 33.1 bits (72), Expect = 0.085
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = +2
Query: 107 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFV 241
L V NL Y + L +FE+ G V + +R T +SRGF FV
Sbjct: 152 LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFV 196
Score = 30.3 bits (65), Expect = 0.60
Identities = 19/66 (28%), Positives = 30/66 (45%)
Frame = +2
Query: 74 RPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFE 253
R P + + V NL + L ++F G+V + + DR T SRGF FV +
Sbjct: 235 RAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSD 294
Query: 254 LVTLKK 271
+ L +
Sbjct: 295 VDELNE 300
Score = 27.1 bits (57), Expect = 5.6
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 259 DAEEALDTMDGRMLDGRELRVQMA 330
+ EA+ +DG+ L+GR +RV +A
Sbjct: 297 ELNEAISALDGQNLEGRAIRVNVA 320
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 32.7 bits (71), Expect = 0.11
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +2
Query: 107 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
L + +++ T LR F GEV + + R++ T RGF FV F
Sbjct: 8 LFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAF 54
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 31.9 bits (69), Expect = 0.20
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = +2
Query: 65 SYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVR 244
+Y PP ++ V NL T E+L++ F + GEV + IP ++G+ +V+
Sbjct: 225 AYVAPPESDVTCTTISVANLDQNVTEEELKKAFSQLGEVIYVKIP------ATKGYGYVQ 278
Query: 245 F 247
F
Sbjct: 279 F 279
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 31.9 bits (69), Expect = 0.20
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +2
Query: 107 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFELVTLKK 271
L V L+ TT E L+ F G++ D + DR + S+GF FV + + +K
Sbjct: 36 LFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEK 90
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 31.9 bits (69), Expect = 0.20
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +2
Query: 113 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
V L + T LR FE+ G++ + + D+ + S+G+ FV F
Sbjct: 11 VGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTF 55
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 31.9 bits (69), Expect = 0.20
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +2
Query: 113 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
V L + T LR FE+ G++ + + D+ + S+G+ FV F
Sbjct: 11 VGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTF 55
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 31.5 bits (68), Expect = 0.26
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +1
Query: 241 EVFRARDAEEALDTMDGRMLDGRELRVQMA 330
E +RDAE+A+ DG LDG LRV++A
Sbjct: 51 EFEHSRDAEDAIKGRDGYNLDGCRLRVELA 80
>At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing
protein low similarity to poly(A) binding protein II
from [Xenopus laevis] GI:11527140, [Mus musculus]
GI:2351846, [Bos taurus] GI:1051125; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) domain
Length = 537
Score = 31.5 bits (68), Expect = 0.26
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 107 LKVDNLTYRTTPEDLRRVFE-RCGEVGDIYIPRDRYTRESRGFAFVRF 247
+ V N+ Y E + F +CG V ++ + D TR +G AFV F
Sbjct: 446 IHVTNVYYAAKKEAISMFFSSKCGAVQNVIVVTDPVTRHPKGTAFVTF 493
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 31.5 bits (68), Expect = 0.26
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +2
Query: 113 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
V L + + E L +F + G V ++Y+P+DR T + + F+ +
Sbjct: 29 VGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEY 73
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 31.5 bits (68), Expect = 0.26
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = +2
Query: 65 SYGRPPPR--IDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAF 238
S GRP P+ ++G + L V + T ED+ F GE+ ++ + DR + +G+A
Sbjct: 82 SDGRPGPQRSVEGWIIL-VSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYAL 140
Query: 239 VRF 247
+ +
Sbjct: 141 IEY 143
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 31.5 bits (68), Expect = 0.26
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +1
Query: 253 ARDAEEALDTMDGRMLDGRELRVQMA 330
ARDAE+A+ DG DG LRV++A
Sbjct: 55 ARDAEDAIHGRDGYDFDGHRLRVELA 80
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 31.5 bits (68), Expect = 0.26
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +1
Query: 253 ARDAEEALDTMDGRMLDGRELRVQMA 330
ARDAE+A+ DG DG LRV++A
Sbjct: 55 ARDAEDAIHGRDGYDFDGHRLRVELA 80
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 31.5 bits (68), Expect = 0.26
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +1
Query: 253 ARDAEEALDTMDGRMLDGRELRVQMA 330
ARDAE+A+ DG DG LRV++A
Sbjct: 55 ARDAEDAIHGRDGYDFDGHRLRVELA 80
>At4g28490.1 68417.m04076 leucine-rich repeat transmembrane protein
kinase, putative
Length = 999
Score = 31.1 bits (67), Expect = 0.34
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Frame = +2
Query: 32 DLS*ISILLKMSYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRY 211
D+ +ILL YG ++ KV ++ TPE + + CG + Y+ R
Sbjct: 819 DVKSSNILLDSDYGA---KVADFGIAKVGQMSGSKTPEAMSGIAGSCGYIAPEYVYTLRV 875
Query: 212 TRESRGFAF-VRFFELVTLKKP 274
+S ++F V ELVT K+P
Sbjct: 876 NEKSDIYSFGVVLLELVTGKQP 897
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 31.1 bits (67), Expect = 0.34
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +2
Query: 113 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
V L++ T L F+R G++ + I R T RGF F+ F
Sbjct: 16 VGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITF 60
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 31.1 bits (67), Expect = 0.34
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +2
Query: 113 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
V L++ T L F+R G++ + I R T RGF F+ F
Sbjct: 16 VGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITF 60
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 30.7 bits (66), Expect = 0.46
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +2
Query: 104 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
+L V +++ +T E L + F + G+V + + D+ +GFA+V F
Sbjct: 22 TLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTF 69
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 30.7 bits (66), Expect = 0.46
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +2
Query: 113 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
V NL T DL+R+F GE+ + +D +SR F FV F
Sbjct: 123 VKNLVETATDADLKRLFGEFGEITSAVVMKDG-EGKSRRFGFVNF 166
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 30.3 bits (65), Expect = 0.60
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +2
Query: 89 IDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFEL 256
++G + V L Y T +R + E G + + +DR T S+G+AF + +L
Sbjct: 355 LEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDL 410
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 30.3 bits (65), Expect = 0.60
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +2
Query: 89 IDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFEL 256
++G + V L Y T +R + E G + + +DR T S+G+AF + +L
Sbjct: 355 LEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDL 410
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 30.3 bits (65), Expect = 0.60
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +2
Query: 89 IDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFEL 256
++G + V L Y T +R + E G + + +DR T S+G+AF + +L
Sbjct: 355 LEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDL 410
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 29.9 bits (64), Expect = 0.80
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = +2
Query: 104 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
SL + NL + + E L +F G+V + +D + ESRGFAF+ F
Sbjct: 18 SLYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKD-FRGESRGFAFIEF 64
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 29.9 bits (64), Expect = 0.80
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +2
Query: 89 IDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAF 238
++G + V L Y T +R + E G + + +DR T S+G+AF
Sbjct: 371 LEGPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAF 420
>At1g47620.1 68414.m05289 cytochrome P450, putative similar to
cytochrome P450 GI:4688670 from [Catharanthus roseus]
Length = 520
Score = 29.9 bits (64), Expect = 0.80
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +3
Query: 99 WSR*K*IILPTERR-LKTYAAFSKGAEKLVISTFPEIGTQG 218
W K I + TE++ LK +A F + EK++ + E+G+QG
Sbjct: 235 WKLQKWIGIGTEKKMLKAHATFDRVCEKIIAAKREELGSQG 275
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 29.5 bits (63), Expect = 1.1
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +1
Query: 253 ARDAEEALDTMDGRMLDGRELRVQMA 330
ARDA++A+ DG DG LRV++A
Sbjct: 55 ARDADDAIYGRDGYDFDGHHLRVELA 80
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 29.5 bits (63), Expect = 1.1
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +1
Query: 253 ARDAEEALDTMDGRMLDGRELRVQMA 330
ARDA++A+ DG DG LRV++A
Sbjct: 55 ARDADDAIYGRDGYDFDGHHLRVELA 80
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 29.5 bits (63), Expect = 1.1
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +2
Query: 113 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFELVTLKK 271
V N++ P+ L F R GE+ + + D+ T +GFA + L + KK
Sbjct: 231 VSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKK 283
Score = 29.1 bits (62), Expect = 1.4
Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 8/102 (7%)
Frame = +2
Query: 113 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFELV----TLKKP-- 274
V L + T + L F++ GE+ D D+ + +S+G+ F+ F LK+P
Sbjct: 132 VHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQPQK 191
Query: 275 --WTRWTDECWTAGNFAFRWRDMVAPHRHTGVVTIAGXVQVS 394
TR T C A + +VAP +H + + VS
Sbjct: 192 KIGTRMT-ACQLASIGPVQGNPVVAPAQHFNPENVQRKIYVS 232
>At1g67770.1 68414.m07733 RNA-binding protein, putative similar to
terminal ear1 gb|AAC39463.1
Length = 527
Score = 29.5 bits (63), Expect = 1.1
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +1
Query: 232 RLREVFRARDAEEALDTMDGRMLDGRELRVQMA 330
R E F RDA +AL M+G+++ G+ + +Q +
Sbjct: 222 RFVEFFDVRDAAKALRVMNGKVISGKPMVIQFS 254
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 29.5 bits (63), Expect = 1.1
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +2
Query: 134 TTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
T EDL +F R G V + RD T +S +AF+ F
Sbjct: 254 TEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEF 291
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 29.1 bits (62), Expect = 1.4
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = +2
Query: 71 GRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFV 241
GR I+ L + NL Y ED++ +F GE+ + DR R S+G A V
Sbjct: 76 GRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGR-SKGTAEV 131
>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
putative
Length = 178
Score = 29.1 bits (62), Expect = 1.4
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = +2
Query: 71 GRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFV 241
GR I+ L + NL Y ED++ +F GE+ + DR R S+G A V
Sbjct: 12 GRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGR-SKGTAEV 67
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 29.1 bits (62), Expect = 1.4
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = +2
Query: 71 GRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFV 241
GR I+ L + NL Y ED++ +F GE+ + DR R S+G A V
Sbjct: 78 GRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGR-SKGTAEV 133
>At3g09160.1 68416.m01082 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif (aka RRM, RBD, or RNP domain)
Length = 198
Score = 29.1 bits (62), Expect = 1.4
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +2
Query: 146 DLRRVFERCGEVGDIYIPRDR 208
+L+++F CGE+ D++IP R
Sbjct: 42 ELKKLFSPCGEITDVHIPETR 62
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 29.1 bits (62), Expect = 1.4
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +2
Query: 113 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
V L+ T E L+ F G++ D + DR + SRGF FV +
Sbjct: 40 VGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTY 84
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 28.7 bits (61), Expect = 1.8
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +2
Query: 104 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
SL V + + L++VF G+V ++ I + TR+S G+ +V F
Sbjct: 59 SLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWF 106
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 28.7 bits (61), Expect = 1.8
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +2
Query: 104 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
SL V + + L++VF G+V ++ I + TR+S G+ +V F
Sbjct: 78 SLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWF 125
>At5g03480.1 68418.m00304 expressed protein ; expression supported
by MPSS
Length = 321
Score = 28.7 bits (61), Expect = 1.8
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 149 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVR 244
L + F+ CGE+ +Y+P D + AF+R
Sbjct: 133 LEKHFDSCGEIRHVYVPTDYERGVLKSVAFLR 164
Score = 27.9 bits (59), Expect = 3.2
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 149 LRRVFERCGEVGDIYIPRD 205
L + F CGE+ IY+PRD
Sbjct: 44 LTKHFASCGEITQIYVPRD 62
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 28.7 bits (61), Expect = 1.8
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = +1
Query: 262 AEEALDTMDGRMLDGRELRVQM 327
A+ A+D M+GR L G++L+VQ+
Sbjct: 403 AQNAIDMMNGRHLGGKKLKVQL 424
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 28.7 bits (61), Expect = 1.8
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +2
Query: 113 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAF 238
+ N+ T E L ++ E G V + + D+Y+ SR F F
Sbjct: 80 IGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGF 121
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 28.7 bits (61), Expect = 1.8
Identities = 11/24 (45%), Positives = 20/24 (83%)
Frame = +1
Query: 259 DAEEALDTMDGRMLDGRELRVQMA 330
DA +AL ++DG+++DGR + V++A
Sbjct: 60 DARKALKSLDGKIVDGRLIFVEVA 83
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 28.3 bits (60), Expect = 2.4
Identities = 15/61 (24%), Positives = 30/61 (49%)
Frame = +2
Query: 74 RPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFE 253
+PP + +L + L + L +F GE+ + +DR T S+G+ FV++ +
Sbjct: 471 KPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYAD 530
Query: 254 L 256
+
Sbjct: 531 V 531
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 28.3 bits (60), Expect = 2.4
Identities = 15/61 (24%), Positives = 30/61 (49%)
Frame = +2
Query: 74 RPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFE 253
+PP + +L + L + L +F GE+ + +DR T S+G+ FV++ +
Sbjct: 471 KPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYAD 530
Query: 254 L 256
+
Sbjct: 531 V 531
>At4g08750.1 68417.m01443 RNA recognition motif (RRM)-containing
protein contains Pfam domain PF00076: RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 461
Score = 28.3 bits (60), Expect = 2.4
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 149 LRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFEL 256
L + F CGE+ +++PR+ T +GF + EL
Sbjct: 364 LSKHFSVCGEITRVFVPRNPSTGAIKGFKAKKALEL 399
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 28.3 bits (60), Expect = 2.4
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +2
Query: 113 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
V L + T E L F++ GE+ D D+ + +S+G+ F+ +
Sbjct: 144 VHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILY 188
Score = 26.2 bits (55), Expect = 9.8
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 113 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 232
V N+ P+ L F + GE+ + + D+YT +GF
Sbjct: 249 VSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGF 288
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 28.3 bits (60), Expect = 2.4
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +2
Query: 113 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
V L + T E L F++ GE+ D D+ + +S+G+ F+ +
Sbjct: 144 VHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILY 188
Score = 26.2 bits (55), Expect = 9.8
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 113 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 232
V N+ P+ L F + GE+ + + D+YT +GF
Sbjct: 249 VSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGF 288
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 28.3 bits (60), Expect = 2.4
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +2
Query: 113 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
V L + T E L F++ GE+ D D+ + +S+G+ F+ +
Sbjct: 144 VHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILY 188
Score = 26.2 bits (55), Expect = 9.8
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 113 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 232
V N+ P+ L F + GE+ + + D+YT +GF
Sbjct: 249 VSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGF 288
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 28.3 bits (60), Expect = 2.4
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 137 TPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
T DL+ GEV ++ I R++ + + +G+AFV F
Sbjct: 104 TEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTF 140
>At2g37150.2 68415.m04558 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 546
Score = 28.3 bits (60), Expect = 2.4
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -2
Query: 259 HELEKPHEGESSTFPCVPISGNVDITNFSAPFEN 158
H +E+PH + P S N + FSAP EN
Sbjct: 76 HSVERPHYNPGVSGPSHDPSVNSTVPTFSAPHEN 109
>At2g37150.1 68415.m04557 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 546
Score = 28.3 bits (60), Expect = 2.4
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -2
Query: 259 HELEKPHEGESSTFPCVPISGNVDITNFSAPFEN 158
H +E+PH + P S N + FSAP EN
Sbjct: 76 HSVERPHYNPGVSGPSHDPSVNSTVPTFSAPHEN 109
>At5g37720.1 68418.m04541 RNA and export factor-binding protein,
putative transcriptional coactivator ALY, Mus musculus,
EMBL:MMU89876
Length = 288
Score = 27.9 bits (59), Expect = 3.2
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +2
Query: 107 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRES 223
L V NL T ED+R +F GEV I D+ R S
Sbjct: 95 LHVTNLDQGVTNEDIRELFSEIGEVERYAIHYDKNGRPS 133
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 27.5 bits (58), Expect = 4.2
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = +2
Query: 113 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRF 247
V N Y T DL R+F++ G V DR +S G+AFV F
Sbjct: 6 VGNFEYETRQSDLERLFDKYGRV-------DRVDMKS-GYAFVYF 42
>At3g49150.1 68416.m05372 F-box family protein contains F-box domain
Pfam:PF00646
Length = 590
Score = 27.5 bits (58), Expect = 4.2
Identities = 11/21 (52%), Positives = 16/21 (76%), Gaps = 2/21 (9%)
Frame = -2
Query: 289 RPSCPGLLQRHEL--EKPHEG 233
+PSC G++QR ++ EKPH G
Sbjct: 468 QPSCSGIIQRDDVHEEKPHYG 488
>At3g26120.1 68416.m03257 RNA-binding protein, putative similar to
GB:AAC39463 from [Zea mays], PF00076 RNA recognition
motif (2 copies)
Length = 615
Score = 27.1 bits (57), Expect = 5.6
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +1
Query: 232 RLREVFRARDAEEALDTMDGRMLDGRELRVQMA 330
R E + RDA A D M+G+ + G+++ ++ +
Sbjct: 252 RFVEFYDVRDAARAFDRMNGKEIGGKQVVIEFS 284
>At3g44530.1 68416.m04786 transducin family protein / WD-40 repeat
family protein contains 6 (4 significant) WD-40 repeats
(PF0400); nuclear protein HIRA, mouse, PIR:S68141
Length = 1051
Score = 26.6 bits (56), Expect = 7.4
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +2
Query: 275 WTRWTDECWTAGNFAFRWRDMVAP 346
W R D+C+ A NF+ W AP
Sbjct: 807 WLRVADDCFPASNFSSSWNLGSAP 830
>At1g37140.1 68414.m04640 RNA-binding protein, putative similar to
terminal ear1 GI:3153237 from [Zea mays]
Length = 233
Score = 26.6 bits (56), Expect = 7.4
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 7/90 (7%)
Frame = +2
Query: 77 PPPRIDGMVSLKVDNLTYRTTPEDLRRVFER-CGEVGD------IYIPRDRYTRESRGFA 235
P ++ G S+ V N+ DL R+ + C + + +Y+P D R + G+A
Sbjct: 76 PENKLAGRTSVMVKNIPNCLGRMDLLRILDNHCRKHNEKSSYDFLYLPMDFGKRANLGYA 135
Query: 236 FVRFFELVTLKKPWTRWTDECWTAGNFAFR 325
FV F + ++ + + W N FR
Sbjct: 136 FVNFTSSLAAERFRREFENFSW--DNIGFR 163
>At5g49290.1 68418.m06100 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to Cf-2.2
[Lycopersicon pimpinellifolium] gi|1184077|gb|AAC15780
Length = 888
Score = 26.2 bits (55), Expect = 9.8
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -3
Query: 276 QGFFSVTSSKNLTKANPLLSL 214
+GFFS+ NLTK PL L
Sbjct: 281 EGFFSLNPLTNLTKLKPLFQL 301
>At5g47020.1 68418.m05795 glycine-rich protein strong similarity to
unknown protein (emb|CAB87688.1)
Length = 1417
Score = 26.2 bits (55), Expect = 9.8
Identities = 29/95 (30%), Positives = 40/95 (42%), Gaps = 6/95 (6%)
Frame = +1
Query: 61 NELRKTSATNRWHGLVKSR*SYLPND---A*RLTPRFRKVRRSW*YLHSQRSVHKGK*RI 231
NE+ T+A + W G V S S L N + + R RK+ R Y+ SQ H
Sbjct: 963 NEINSTAAYDWWEGSVHSILSVLANPCAWSWKQWRRRRKIHRLQEYVKSQYD-HSCLRSC 1021
Query: 232 RLREVFRARDAEEALDTMDGRM---LDGRELRVQM 327
R R +++ D M + L G E RV M
Sbjct: 1022 RSRALYKGMKVGATPDLMVAYIDFFLGGDEKRVDM 1056
>At5g06400.1 68418.m00716 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 1030
Score = 26.2 bits (55), Expect = 9.8
Identities = 13/50 (26%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Frame = +2
Query: 92 DGMVSL--KVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFA 235
D +VS+ +++ L++R PE + V +RC +V + + + ++ GF+
Sbjct: 137 DVLVSMEDRLEKLSFRFEPEIVENVLKRCFKVPHLAMRFFNWVKQKDGFS 186
>At5g03500.1 68418.m00306 transcriptional co-activator-related low
similarity to transcriptional co-activator CRSP33 [Homo
sapiens] GI:4220890
Length = 443
Score = 26.2 bits (55), Expect = 9.8
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +2
Query: 149 LRRVFERCGEVGDIYIPRD 205
L + F CG++ IY+PRD
Sbjct: 227 LEKHFASCGKITHIYVPRD 245
>At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing
protein RNA-binding protein LAH1, Saccharomyces
cerevisiae, PIR2:B48600; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 433
Score = 26.2 bits (55), Expect = 9.8
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +2
Query: 125 TYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFELVT 262
+Y ED+ F + G+V + +P R+ ESR F+ V E T
Sbjct: 124 SYDVKREDVESFFSQYGKVNSVRMP--RHVAESRIFSGVALVEFPT 167
>At3g62210.1 68416.m06989 expressed protein contains Pfam profile
PF04396: Protein of unknown function, DUF537; expression
supported by MPSS
Length = 279
Score = 26.2 bits (55), Expect = 9.8
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 301 PTFVRPSCPGLLQRHELEK 245
P+ +RP CP ++RH EK
Sbjct: 237 PSNMRPLCPNAIRRHRQEK 255
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 26.2 bits (55), Expect = 9.8
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +1
Query: 259 DAEEALDTMDGRMLDGRELRVQMA 330
DA A+D MDG L GR L V A
Sbjct: 66 DASAAMDNMDGAELYGRVLTVNYA 89
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 26.2 bits (55), Expect = 9.8
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 256 RDAEEALDTMDGRMLDGRELRVQMA 330
RDA++A+ DG DG LRV++A
Sbjct: 56 RDADDAIYGRDGYDFDGCRLRVEIA 80
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,573,246
Number of Sequences: 28952
Number of extensions: 166499
Number of successful extensions: 660
Number of sequences better than 10.0: 154
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 702840360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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