Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0319
         (644 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9VXG6 Cluster: CG4301-PA; n=5; Diptera|Rep: CG4301-PA ...    40   0.039
UniRef50_A2TZQ1 Cluster: Putative transcriptional regulator; n=1...    35   1.5  
UniRef50_A5BE74 Cluster: Putative uncharacterized protein; n=1; ...    34   2.6  
UniRef50_P50991 Cluster: T-complex protein 1 subunit delta; n=13...    34   3.4  

>UniRef50_Q9VXG6 Cluster: CG4301-PA; n=5; Diptera|Rep: CG4301-PA -
            Drosophila melanogaster (Fruit fly)
          Length = 1342

 Score = 40.3 bits (90), Expect = 0.039
 Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 2/103 (1%)
 Frame = -3

Query: 324  IYSPYYAINTCFSIENTLLDVY-ACQYWLITSYLAEYLRNI-FSCFILLVADWCVTSYLN 151
            ++ PY+ +   F+I ++++  Y A  ++   + L  Y + + FSCF  L+  W V   +N
Sbjct: 1177 LHWPYFLMWVLFAIYHSVIIFYFAFCFFYYNNVLLNYGQTVAFSCFGTLLM-WTVVVVVN 1235

Query: 150  IKLS*NNYVVD*QD*YFVKIHFLVFTFLANSWIYNVINFEYST 22
            +KL   +  +     Y   I   +  F+  + IYNVIN +Y T
Sbjct: 1236 LKLWLESMYLSFW--YIFTIIISILGFVVTTVIYNVINLDYDT 1276


>UniRef50_A2TZQ1 Cluster: Putative transcriptional regulator; n=1;
           Polaribacter dokdonensis MED152|Rep: Putative
           transcriptional regulator - Polaribacter dokdonensis
           MED152
          Length = 800

 Score = 35.1 bits (77), Expect = 1.5
 Identities = 15/41 (36%), Positives = 26/41 (63%)
 Frame = +1

Query: 514 IDYLHYDAVCFKFLSLVLYL*FTCTCYIIY*AINKYLKIKF 636
           I+Y +Y+ +C+ F+SL+L + F    + I   I+ Y KIK+
Sbjct: 87  INYTNYNLICYLFISLILLVRFARNLFKIISKIHTYKKIKY 127


>UniRef50_A5BE74 Cluster: Putative uncharacterized protein; n=1;
           Vitis vinifera|Rep: Putative uncharacterized protein -
           Vitis vinifera (Grape)
          Length = 752

 Score = 34.3 bits (75), Expect = 2.6
 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -3

Query: 300 NTCFSIENTLLDVYACQY-WLITSYLAEYLRNIFSCFILLVADWCVTSYLNI 148
           +T F+I+ TLL ++     WLI+      LRNIFS F  L  D+    Y N+
Sbjct: 59  DTRFTIKTTLLGIFNWSMRWLISHKEVSQLRNIFSGFQTLWVDYSDIVYANV 110


>UniRef50_P50991 Cluster: T-complex protein 1 subunit delta; n=138;
           Eukaryota|Rep: T-complex protein 1 subunit delta - Homo
           sapiens (Human)
          Length = 539

 Score = 33.9 bits (74), Expect = 3.4
 Identities = 14/17 (82%), Positives = 17/17 (100%)
 Frame = +1

Query: 4   LATETVRAILKIDDIIN 54
           LATETVR+ILKIDD++N
Sbjct: 521 LATETVRSILKIDDVVN 537


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 577,645,144
Number of Sequences: 1657284
Number of extensions: 11007338
Number of successful extensions: 21717
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 21193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21712
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48541014171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)