Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0319
         (644 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    27   1.8  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    27   3.1  
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz...    26   4.0  
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    26   5.3  
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch...    25   7.1  

>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = -3

Query: 267 DVYACQYWLI----TSYLAEYLRNIFSCFILLVADWCVTSYLN 151
           ++  CQY LI    TS+L  Y   + S   + +  +C+ SY+N
Sbjct: 484 NIIKCQYGLISENWTSFLVAYSTFVSSALAVELLKFCLNSYVN 526


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
           protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -1

Query: 140 VKIIMLWISKINTLLKYISSSSPFWLIHGFIMSSILSIA 24
           +KII L  + +N L K  + +S   LIH F +S  L+ A
Sbjct: 377 LKIIQLCFNSMNPLTKCAAQTSWIRLIHEFSLSETLTQA 415


>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 900

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 288 SIENTLLDVYACQYWLITSYLAEYL 214
           SI NTL  +YAC      SYL  Y+
Sbjct: 645 SIHNTLFCIYACHSSSNESYLMNYI 669


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 152 ISS*VKIIMLWISKINTLLKYISSSSPF 69
           I S   I+  WI+++  L KY S+  PF
Sbjct: 513 IESGQDILFFWIARMALLCKYFSNELPF 540


>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 577

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -3

Query: 327 WIYSPYYAINTCFSIE-NTLLDVYACQYWLITSYLAEYLRNIFSCF 193
           W YSP YAI + F I  + +    A    L   ++  ++R + +CF
Sbjct: 59  WEYSPEYAIRSWFYIALHAVPGFLARGLGLSRLHVFYFIRGVLACF 104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,547,980
Number of Sequences: 5004
Number of extensions: 51919
Number of successful extensions: 116
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)