Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0319
         (644 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53295| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_17097| Best HMM Match : F-box (HMM E-Value=3.8)                     31   1.1  
SB_15167| Best HMM Match : F-box (HMM E-Value=3.8)                     31   1.1  
SB_6240| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.3  

>SB_53295| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 272

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/17 (76%), Positives = 17/17 (100%)
 Frame = +1

Query: 4   LATETVRAILKIDDIIN 54
           LA+ETVR+ILKIDDI++
Sbjct: 201 LASETVRSILKIDDIVS 217


>SB_17097| Best HMM Match : F-box (HMM E-Value=3.8)
          Length = 408

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/62 (27%), Positives = 31/62 (50%)
 Frame = -3

Query: 327 WIYSPYYAINTCFSIENTLLDVYACQYWLITSYLAEYLRNIFSCFILLVADWCVTSYLNI 148
           W+Y  Y  + + + +  + L+V +  YWL  SYL       +  ++ ++  W   SYLN+
Sbjct: 64  WLYKSYLNVLS-YWLYKSFLNVLS--YWLFKSYLNALSYCPYKSYLNVLLYWPYKSYLNV 120

Query: 147 KL 142
            L
Sbjct: 121 LL 122



 Score = 28.7 bits (61), Expect = 4.3
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = -3

Query: 327 WIYSPYY-AINTCFSIENTLLDVYACQYWLITSYLAEYLRNIFSCFILLVADWCVTSYLN 151
           W Y  Y  A++ C     + L+V +  YWL  SYL      ++  F+ +++ W   SYLN
Sbjct: 40  WPYKSYLNALSYC--PYKSYLNVLS--YWLYKSYLNVLSYWLYKSFLNVLSYWLFKSYLN 95


>SB_15167| Best HMM Match : F-box (HMM E-Value=3.8)
          Length = 392

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/62 (27%), Positives = 31/62 (50%)
 Frame = -3

Query: 327 WIYSPYYAINTCFSIENTLLDVYACQYWLITSYLAEYLRNIFSCFILLVADWCVTSYLNI 148
           W+Y  Y  + + + +  + L+V +  YWL  SYL       +  ++ ++  W   SYLN+
Sbjct: 48  WLYKSYLNVLS-YWLYKSFLNVLS--YWLFKSYLNALSYCPYKSYLNVLLYWPYKSYLNV 104

Query: 147 KL 142
            L
Sbjct: 105 LL 106



 Score = 28.7 bits (61), Expect = 4.3
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = -3

Query: 327 WIYSPYY-AINTCFSIENTLLDVYACQYWLITSYLAEYLRNIFSCFILLVADWCVTSYLN 151
           W Y  Y  A++ C     + L+V +  YWL  SYL      ++  F+ +++ W   SYLN
Sbjct: 24  WPYKSYLNALSYC--PYKSYLNVLS--YWLYKSYLNVLSYWLYKSFLNVLSYWLFKSYLN 79


>SB_6240| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 308

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = -3

Query: 303 INTCFSIEN--TLLDVYACQYWLITSYLAEYLRNIFSCFILLVADWCVTSYL 154
           IN+ FS+ +  T+  +   QY  +   L + L N F C +++++ W ++ +L
Sbjct: 74  INSLFSLASILTICSISIFQYVSVVLPLEKQLTN-FRCLVMVISVWIISGFL 124


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,683,876
Number of Sequences: 59808
Number of extensions: 338802
Number of successful extensions: 684
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)