Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0319
         (644 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g39850.1 68417.m05646 peroxisomal ABC transporter (PXA1) iden...    29   3.5  
At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P...    29   3.5  
At4g02820.1 68417.m00382 pentatricopeptide (PPR) repeat-containi...    27   8.1  

>At4g39850.1 68417.m05646 peroxisomal ABC transporter (PXA1) identical
            to peroxisomal ABC transporter PXA1 GI:15320529 from
            [Arabidopsis thaliana]; contains Pfam profile PF00005:
            ABC transporter;
          Length = 1337

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -2

Query: 490  FTCYLKMRNNTIYPIIEAVAQKRTSLWNTGSQSPTK 383
            +TC   +R+  IYP+ +  A+KR +   T  +S T+
Sbjct: 1178 YTCLGTLRDQIIYPLSKEEAEKRAAKLYTSGESSTE 1213


>At3g18190.1 68416.m02314 chaperonin, putative similar to
           SWISS-PROT:P50991- T-complex protein 1, delta subunit
           (TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118
           domain, TCP-1/cpn60 chaperonin family
          Length = 536

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/16 (81%), Positives = 14/16 (87%)
 Frame = +1

Query: 4   LATETVRAILKIDDII 51
           LATE VR ILKIDDI+
Sbjct: 518 LATECVRMILKIDDIV 533


>At4g02820.1 68417.m00382 pentatricopeptide (PPR) repeat-containing
           protein low similarity to DNA-binding protein [Triticum
           aestivum] GI:6958202; contains Pfam profile PF01535: PPR
           repeat
          Length = 532

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 19/38 (50%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +1

Query: 247 ILARINVQQGVLYRKARIYRIV-RGINPSYSSTEWEIL 357
           ILA    +  VL  +    RIV +GINPSYS+  WEIL
Sbjct: 377 ILAEYMNRDEVLLGEKFYERIVEKGINPSYST--WEIL 412


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,519,173
Number of Sequences: 28952
Number of extensions: 241368
Number of successful extensions: 480
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)