BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0318 (658 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_18188| Best HMM Match : SRP54 (HMM E-Value=0) 62 3e-10 SB_5072| Best HMM Match : Aldedh (HMM E-Value=2.4e-14) 60 1e-09 SB_15907| Best HMM Match : Aldedh (HMM E-Value=3.2e-23) 56 3e-08 SB_12802| Best HMM Match : Aldedh (HMM E-Value=0) 53 2e-07 SB_32909| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 1e-06 SB_57708| Best HMM Match : Aldedh (HMM E-Value=0) 50 2e-06 SB_37963| Best HMM Match : Aldedh (HMM E-Value=1.8e-16) 48 9e-06 SB_25829| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04 SB_10421| Best HMM Match : Guanylate_cyc (HMM E-Value=0) 44 1e-04 SB_58786| Best HMM Match : Aldedh (HMM E-Value=0) 39 0.003 SB_42352| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.029 SB_13735| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.47 SB_16513| Best HMM Match : Aldedh (HMM E-Value=9.9e-05) 31 1.1 SB_52935| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4 SB_4444| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4 SB_58730| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4 SB_6771| Best HMM Match : Aldedh (HMM E-Value=0) 28 5.8 SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7 SB_27725| Best HMM Match : RVT_1 (HMM E-Value=1.9e-19) 28 7.7 SB_50940| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7 SB_26122| Best HMM Match : Aldedh (HMM E-Value=0) 28 7.7 >SB_18188| Best HMM Match : SRP54 (HMM E-Value=0) Length = 410 Score = 62.5 bits (145), Expect = 3e-10 Identities = 26/44 (59%), Positives = 36/44 (81%) Frame = +2 Query: 278 LRGIQSVEHCCSITSLQLGDSIQNIAKDMDTHSYKVPLGVVGGV 409 LR + VEH CSITSLQ+G+++ ++ KDMDT+SY+VPLGV G+ Sbjct: 365 LRTEEVVEHTCSITSLQMGETMPSVTKDMDTYSYRVPLGVCAGI 408 >SB_5072| Best HMM Match : Aldedh (HMM E-Value=2.4e-14) Length = 266 Score = 60.5 bits (140), Expect = 1e-09 Identities = 33/86 (38%), Positives = 53/86 (61%), Gaps = 2/86 (2%) Frame = +3 Query: 3 QYVDSKTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAY--KTWSKSTVLTRQQL 176 Q+ D+ I++ NPAT EVI RVP A Q E+ A+ AA++A+ WS+ + RQ+L Sbjct: 51 QWCDAADGQTIQVLNPATAEVIARVPRAGQREIDRAVMAARQAFDDSPWSRIKPVERQKL 110 Query: 177 MFKFARLLRENQSKLAAKITEEQGKT 254 ++ FA L+ +N + LA + + GK+ Sbjct: 111 LWNFADLIEKNAALLAEIESIDNGKS 136 Score = 52.0 bits (119), Expect = 4e-07 Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 2/52 (3%) Frame = +2 Query: 359 DMDTHSY--KVPLGVVGGVAAFNFPVMIPLWMFPPALVTGNTCIIKPSEQDP 508 D H Y + +GVVG + A+NFP+++ W PAL TG T ++KP+E P Sbjct: 176 DAQFHGYTRREAVGVVGAIVAWNFPLLLACWKLGPALATGCTTVLKPAEDTP 227 Score = 27.9 bits (59), Expect = 7.7 Identities = 12/22 (54%), Positives = 15/22 (68%) Frame = +1 Query: 517 LMMMELLQEAGAPPGVVNIIHG 582 L + EL EAG P GVVN++ G Sbjct: 231 LKLAELALEAGYPAGVVNVVTG 252 >SB_15907| Best HMM Match : Aldedh (HMM E-Value=3.2e-23) Length = 275 Score = 55.6 bits (128), Expect = 3e-08 Identities = 25/87 (28%), Positives = 45/87 (51%) Frame = +2 Query: 248 ENLADAEGDVLRGIQSVEHCCSITSLQLGDSIQNIAKDMDTHSYKVPLGVVGGVAAFNFP 427 + LA+ G+ R Q + + Q+G++ +++ ++ + + P+GVVG + +NFP Sbjct: 95 KTLAEGVGETYRSGQFFHYYAAEVLRQMGETAESVRPGIEIETRREPVGVVGIITPWNFP 154 Query: 428 VMIPLWMFPPALVTGNTCIIKPSEQDP 508 W PAL GN + KP+ Q P Sbjct: 155 TATGAWKIAPALAFGNAIVWKPANQVP 181 Score = 35.9 bits (79), Expect = 0.029 Identities = 19/84 (22%), Positives = 40/84 (47%) Frame = +3 Query: 3 QYVDSKTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYKTWSKSTVLTRQQLMF 182 ++V+ + ++ ++VIG +A + + +A+ AA + W KS + R ++ Sbjct: 13 EWVEGNKGSVANISPADISDVIGHYAQADKAQTEAAIAAAAAGQREWQKSGLEQRYSVLM 72 Query: 183 KFARLLRENQSKLAAKITEEQGKT 254 L + +L A + E+GKT Sbjct: 73 AIGDELIARKDELGAILAREEGKT 96 >SB_12802| Best HMM Match : Aldedh (HMM E-Value=0) Length = 880 Score = 53.2 bits (122), Expect = 2e-07 Identities = 26/83 (31%), Positives = 41/83 (49%) Frame = +2 Query: 260 DAEGDVLRGIQSVEHCCSITSLQLGDSIQNIAKDMDTHSYKVPLGVVGGVAAFNFPVMIP 439 +A DV +E+ + G +Q + ++ + PLGVVGG+ A+N+P+ Sbjct: 369 EALWDVDNVADVLEYYAGVAPTLSGQHVQ-LPNGSFAYTRREPLGVVGGIGAWNYPIQTA 427 Query: 440 LWMFPPALVTGNTCIIKPSEQDP 508 W PA+ GNT + KPS P Sbjct: 428 CWKIAPAIACGNTIVYKPSPLTP 450 Score = 39.5 bits (88), Expect = 0.002 Identities = 19/71 (26%), Positives = 41/71 (57%) Frame = +3 Query: 39 LTNPATNEVIGRVPEATQDELTSALDAAKRAYKTWSKSTVLTRQQLMFKFARLLRENQSK 218 +T+P+T + V + + E+ A+ +A++A+KTWS + R +++ +RL+R+ + Sbjct: 295 ITDPSTGHISCEVKGSGKTEVKRAVLSARKAFKTWSVLSGSERGRILGDASRLVRKRRED 354 Query: 219 LAAKITEEQGK 251 +A + GK Sbjct: 355 IAKVEVHDNGK 365 Score = 32.7 bits (71), Expect = 0.27 Identities = 13/20 (65%), Positives = 16/20 (80%) Frame = +1 Query: 523 MMELLQEAGAPPGVVNIIHG 582 + ++L EAG PPGVVNII G Sbjct: 456 LADILTEAGVPPGVVNIIQG 475 >SB_32909| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1411 Score = 50.8 bits (116), Expect = 1e-06 Identities = 21/46 (45%), Positives = 31/46 (67%) Frame = +2 Query: 359 DMDTHSYKVPLGVVGGVAAFNFPVMIPLWMFPPALVTGNTCIIKPS 496 D + +K P+GVVGG+ +NFP+M+ W PAL GNT ++KP+ Sbjct: 759 DTEMQGWK-PVGVVGGIVPWNFPLMLLCWKVCPALAMGNTVVLKPA 803 Score = 42.7 bits (96), Expect = 3e-04 Identities = 20/72 (27%), Positives = 42/72 (58%) Frame = +3 Query: 39 LTNPATNEVIGRVPEATQDELTSALDAAKRAYKTWSKSTVLTRQQLMFKFARLLRENQSK 218 + NP+ EVI +V + + ++ A++AA +A W K R Q+++ A L +++ Sbjct: 1167 ILNPS-GEVIAQVADGNRKDIREAVEAAHKAASGWGKRAAHNRAQIVYYLAENLEMRRAE 1225 Query: 219 LAAKITEEQGKT 254 +AA+I++ G++ Sbjct: 1226 VAARISDMTGQS 1237 Score = 33.1 bits (72), Expect = 0.20 Identities = 15/65 (23%), Positives = 35/65 (53%) Frame = +3 Query: 60 EVIGRVPEATQDELTSALDAAKRAYKTWSKSTVLTRQQLMFKFARLLRENQSKLAAKITE 239 EV+ + ++ A+ AA+ A+++WSK R + ++ AR ++++ +A + Sbjct: 668 EVLASTTQGETQDIEDAVKAARTAFQSWSKLPGHARARHLYSIARHVQKHARLIAVLESM 727 Query: 240 EQGKT 254 + GK+ Sbjct: 728 DNGKS 732 Score = 32.3 bits (70), Expect = 0.36 Identities = 14/41 (34%), Positives = 24/41 (58%) Frame = +2 Query: 386 PLGVVGGVAAFNFPVMIPLWMFPPALVTGNTCIIKPSEQDP 508 P+GV+G ++ + + PA++ GNT +I PSE+ P Sbjct: 1291 PVGVIGIACPDECSLLAFVSLLAPAIIRGNTVVIVPSEKYP 1331 Score = 29.9 bits (64), Expect = 1.9 Identities = 11/24 (45%), Positives = 16/24 (66%) Frame = +1 Query: 511 ATLMMMELLQEAGAPPGVVNIIHG 582 + L+ E+ EAG PPGV N++ G Sbjct: 809 SALLFAEICAEAGLPPGVFNVVTG 832 >SB_57708| Best HMM Match : Aldedh (HMM E-Value=0) Length = 528 Score = 50.0 bits (114), Expect = 2e-06 Identities = 24/67 (35%), Positives = 41/67 (61%) Frame = +3 Query: 45 NPATNEVIGRVPEATQDELTSALDAAKRAYKTWSKSTVLTRQQLMFKFARLLRENQSKLA 224 NPAT E +G+V E A+ A +A++TW K+T R + + K+ +L+ ++Q++LA Sbjct: 82 NPATGEELGQVANMGAKEGELAVQEAYKAFQTWKKTTAKERSEKLRKWFQLILQHQNELA 141 Query: 225 AKITEEQ 245 +T EQ Sbjct: 142 ELLTTEQ 148 Score = 29.5 bits (63), Expect = 2.5 Identities = 13/33 (39%), Positives = 20/33 (60%) Frame = +1 Query: 517 LMMMELLQEAGAPPGVVNIIHGTHGAVNFICDS 615 L + +L +EAG P GV+N I + VN + D+ Sbjct: 183 LALQQLAEEAGFPAGVINTIPCSRDRVNEVTDT 215 Score = 27.9 bits (59), Expect = 7.7 Identities = 14/31 (45%), Positives = 18/31 (58%) Frame = +2 Query: 416 FNFPVMIPLWMFPPALVTGNTCIIKPSEQDP 508 +NFP+ + AL G T IIKPSE+ P Sbjct: 149 WNFPLGMITRKAAAALAAGCTVIIKPSEETP 179 >SB_37963| Best HMM Match : Aldedh (HMM E-Value=1.8e-16) Length = 266 Score = 47.6 bits (108), Expect = 9e-06 Identities = 23/75 (30%), Positives = 44/75 (58%) Frame = +3 Query: 30 WIELTNPATNEVIGRVPEATQDELTSALDAAKRAYKTWSKSTVLTRQQLMFKFARLLREN 209 +I+ +P+ EV +VP++ ++ + A+ AA A+K+WS S+ R + + K A L+ + Sbjct: 25 YIDSYDPSRGEVYCKVPDSGKEHVDLAVAAANAAFKSWSVSSPAYRAERLRKLADLIEDR 84 Query: 210 QSKLAAKITEEQGKT 254 + A + +QGKT Sbjct: 85 LEEFAQAESRDQGKT 99 Score = 36.3 bits (80), Expect = 0.022 Identities = 14/22 (63%), Positives = 18/22 (81%) Frame = +1 Query: 520 MMMELLQEAGAPPGVVNIIHGT 585 MM EL+ +AG PPGV+NI+ GT Sbjct: 191 MMAELINDAGFPPGVINIVFGT 212 Score = 35.5 bits (78), Expect = 0.038 Identities = 15/43 (34%), Positives = 26/43 (60%) Frame = +2 Query: 371 HSYKVPLGVVGGVAAFNFPVMIPLWMFPPALVTGNTCIIKPSE 499 +S + P GV G ++ +N P+ + + PA+ +G T + KPSE Sbjct: 141 YSLRSPKGVAGLISPWNLPLYLLSFKIAPAVASGCTVVCKPSE 183 >SB_25829| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 826 Score = 44.0 bits (99), Expect = 1e-04 Identities = 18/41 (43%), Positives = 26/41 (63%) Frame = +2 Query: 386 PLGVVGGVAAFNFPVMIPLWMFPPALVTGNTCIIKPSEQDP 508 P+G+VG + +NFP+ + PAL GN I+KP+EQ P Sbjct: 467 PVGLVGAITPWNFPLNMASVKIAPALACGNVVILKPAEQTP 507 Score = 43.6 bits (98), Expect = 1e-04 Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 3/86 (3%) Frame = +3 Query: 3 QYVDSKTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYK---TWSKSTVLTRQQ 173 ++VD + NP T E I + E ++++ A+ AAK A+K W R + Sbjct: 337 EFVDCTSGKVFPTINPTTGEKICDISEGDKEDVDKAVKAAKEAFKLGSAWRTMDASMRGK 396 Query: 174 LMFKFARLLRENQSKLAAKITEEQGK 251 L++K A+L+ + + LA+ T + GK Sbjct: 397 LLYKLAQLIDRDIAYLASLETIDSGK 422 >SB_10421| Best HMM Match : Guanylate_cyc (HMM E-Value=0) Length = 1485 Score = 44.0 bits (99), Expect = 1e-04 Identities = 19/47 (40%), Positives = 29/47 (61%) Frame = +2 Query: 368 THSYKVPLGVVGGVAAFNFPVMIPLWMFPPALVTGNTCIIKPSEQDP 508 T++ P+GVVG + +NFP+++ PAL G I+KP+EQ P Sbjct: 1331 TYTRHEPVGVVGAITPWNFPLLMEGLKLAPALACGCVVILKPAEQTP 1377 >SB_58786| Best HMM Match : Aldedh (HMM E-Value=0) Length = 421 Score = 39.1 bits (87), Expect = 0.003 Identities = 24/85 (28%), Positives = 36/85 (42%) Frame = +2 Query: 254 LADAEGDVLRGIQSVEHCCSITSLQLGDSIQNIAKDMDTHSYKVPLGVVGGVAAFNFPVM 433 L +A G+VL +E GD I + K P+GV + +NFP+ Sbjct: 37 LLEARGEVLYAANYIEFFSEEAKRVYGDIIPSNNPGQKVLITKEPVGVCASITPWNFPIA 96 Query: 434 IPLWMFPPALVTGNTCIIKPSEQDP 508 + + A+ G T I +PS Q P Sbjct: 97 MLVRKASSAIACGCTMIARPSGQTP 121 >SB_42352| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 749 Score = 35.9 bits (79), Expect = 0.029 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%) Frame = +2 Query: 350 IAKDMDTHSYK-VPLGVVGGVAAFNFPVMIPLWMFPPALVTGNTCIIKPSE 499 I MDT K PLGV ++A+N+PV + A+ GN ++KPSE Sbjct: 59 IVNKMDTCYIKNEPLGVALIISAWNYPVQLIFLPLVGAIAGGNCAVLKPSE 109 >SB_13735| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 181 Score = 31.9 bits (69), Expect = 0.47 Identities = 14/33 (42%), Positives = 19/33 (57%) Frame = +2 Query: 386 PLGVVGGVAAFNFPVMIPLWMFPPALVTGNTCI 484 P+G VG + AFNFPV + W ++ GN I Sbjct: 148 PVGTVGVITAFNFPVAVFGWNTAISMTCGNVNI 180 >SB_16513| Best HMM Match : Aldedh (HMM E-Value=9.9e-05) Length = 301 Score = 30.7 bits (66), Expect = 1.1 Identities = 12/37 (32%), Positives = 23/37 (62%) Frame = +3 Query: 45 NPATNEVIGRVPEATQDELTSALDAAKRAYKTWSKST 155 +PAT + +G+V + A++AA + ++TW K+T Sbjct: 115 SPATGDELGQVSNMGAQQWELAVNAAYKEFQTWKKTT 151 >SB_52935| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1333 Score = 30.3 bits (65), Expect = 1.4 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = +3 Query: 3 QYVDSKTTNWIELTNPATNEVIGRVPEATQDELTSALDAAK 125 ++VDS NP V+ +V AT +++ A+DAAK Sbjct: 716 EFVDSHHGKTFNTINPTDGTVLAQVSLATHEDVDDAVDAAK 756 Score = 30.3 bits (65), Expect = 1.4 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%) Frame = +1 Query: 517 LMMMELLQEAGAPPGVVNIIHGTHGAV-NFICDSRRSRPYPSSVATP 654 L EL AG P GV+NI+ G+ V N IC+ R + +TP Sbjct: 763 LKFAELAARAGFPKGVINILPGSGSVVGNRICEHPDVRKLGFTGSTP 809 >SB_4444| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 357 Score = 30.3 bits (65), Expect = 1.4 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 3/56 (5%) Frame = +1 Query: 268 GRCASRNSVSGALL*HHIASARRQHPKHRQRHGHA*LQGATWSCW---RCCSLQFP 426 GRC+SR+ S A H AS+R H + LQG W +C SL P Sbjct: 289 GRCSSRDLSSSASSQEHFASSRVSQQSSELHHLLSSLQGVHWRTGEIPKCASLVPP 344 >SB_58730| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1014 Score = 28.7 bits (61), Expect = 4.4 Identities = 14/58 (24%), Positives = 24/58 (41%) Frame = +3 Query: 75 VPEATQDELTSALDAAKRAYKTWSKSTVLTRQQLMFKFARLLRENQSKLAAKITEEQG 248 +P T+ D K T+L LMF ++ +R N ++ K+T+ G Sbjct: 791 IPFDTERHYHPEFDGYHPGIKVKQADTILIGYPLMFNMSKQIRRNDLEMYEKVTDRNG 848 >SB_6771| Best HMM Match : Aldedh (HMM E-Value=0) Length = 523 Score = 28.3 bits (60), Expect = 5.8 Identities = 10/18 (55%), Positives = 14/18 (77%) Frame = +1 Query: 523 MMELLQEAGAPPGVVNII 576 +ME+ QEAG P GV+N + Sbjct: 222 VMEMFQEAGLPDGVINFV 239 >SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 6753 Score = 27.9 bits (59), Expect = 7.7 Identities = 9/25 (36%), Positives = 15/25 (60%) Frame = +1 Query: 559 GVVNIIHGTHGAVNFICDSRRSRPY 633 GV N+ H T+G+ +C++ PY Sbjct: 2844 GVANVCHNTYGSYECMCETEMYGPY 2868 >SB_27725| Best HMM Match : RVT_1 (HMM E-Value=1.9e-19) Length = 262 Score = 27.9 bits (59), Expect = 7.7 Identities = 12/38 (31%), Positives = 21/38 (55%) Frame = +3 Query: 78 PEATQDELTSALDAAKRAYKTWSKSTVLTRQQLMFKFA 191 P++ + T A R+YK W S + TR+Q++ + A Sbjct: 22 PDSGNNMSTVARAVRTRSYKCWCLSHIFTRKQVLIRTA 59 >SB_50940| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 531 Score = 27.9 bits (59), Expect = 7.7 Identities = 11/29 (37%), Positives = 16/29 (55%) Frame = -2 Query: 585 CPVNDINNARRSPGFLKELHHHERGSGSC 499 CP+N+ A +P F K +H H+ SC Sbjct: 95 CPINNYFPAVSNPCFWKWIHAHQTAQESC 123 >SB_26122| Best HMM Match : Aldedh (HMM E-Value=0) Length = 462 Score = 27.9 bits (59), Expect = 7.7 Identities = 9/21 (42%), Positives = 18/21 (85%) Frame = +1 Query: 520 MMMELLQEAGAPPGVVNIIHG 582 ++ ++L+++G P GVVNI++G Sbjct: 196 LLAKVLKDSGIPKGVVNIVYG 216 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 20,377,265 Number of Sequences: 59808 Number of extensions: 414288 Number of successful extensions: 1150 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 1045 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1148 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1681430875 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -