Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0317
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyc...    59   5e-10
SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomy...    52   9e-08
SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism...    47   2e-06
SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyc...    42   1e-04
SPAC19G12.09 |||NADH/NADPH dependent indole-3-acetaldehyde reduc...    36   0.004
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    33   0.046
SPCC965.06 |||potassium channel subunit |Schizosaccharomyces pom...    28   0.99 
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        28   1.3  
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    27   3.0  
SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase YakC|Schizo...    26   4.0  
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po...    26   5.3  
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch...    26   5.3  
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    25   7.0  
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    25   9.2  
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p...    25   9.2  
SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   9.2  
SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyce...    25   9.2  
SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual    25   9.2  

>SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 59.3 bits (137), Expect = 5e-10
 Identities = 30/78 (38%), Positives = 44/78 (56%)
 Frame = +1

Query: 274 SVKEVATLKLRDGTFMPVIALGTALLPPRLATEIVETAIDMGYRAIDTAYIYGNEKLIGK 453
           S  E  T+ L +G  +P I  G  +L       +V  A+D GYR IDTA +YGNE + GK
Sbjct: 4   SQTESTTVTLTNGMVIPRIGFGAFMLKYNECYGLVTQALDSGYRHIDTAAVYGNEDICGK 63

Query: 454 AIKNKIDDGTVRRDELFI 507
           AI +  +   V+R ++F+
Sbjct: 64  AIVDWCEKNNVKRTDIFL 81


>SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 321

 Score = 51.6 bits (118), Expect = 9e-08
 Identities = 28/65 (43%), Positives = 36/65 (55%)
 Frame = +1

Query: 301 LRDGTFMPVIALGTALLPPRLATEIVETAIDMGYRAIDTAYIYGNEKLIGKAIKNKIDDG 480
           L DG+ +P + LGT    P      V+TA+  GYR ID A IYGNE  +G  IK   + G
Sbjct: 18  LADGSKIPGLGLGTWRSEPNQTKNAVKTALQYGYRHIDAAAIYGNEDEVGDGIK---ESG 74

Query: 481 TVRRD 495
             R+D
Sbjct: 75  VPRKD 79



 Score = 35.5 bits (78), Expect = 0.007
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +3

Query: 513 KLWSTFHRTDLVETACRISLADLGLEFFDLFLIHNPMSLQ 632
           KLW   H  + V  A   +L DL L++ D +LIH P+S +
Sbjct: 85  KLWCNAHAPEAVPKALEKTLKDLKLDYLDEYLIHWPVSFK 124


>SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 47.2 bits (107), Expect = 2e-06
 Identities = 32/86 (37%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
 Frame = +1

Query: 289 ATLKLRDGTFMPVIALGTALLPPRLATEIVETAIDMGYRAIDTAYIYGNEKLIGKAIKNK 468
           A   L +G  +P I LGT           V  A+  GYR IDTA+IYGNEK IG+ I+  
Sbjct: 13  AYFTLPNGDKIPSIGLGTWRSGKDETKNAVCAALKAGYRHIDTAHIYGNEKEIGEGIR-- 70

Query: 469 IDDGTVRRD-ELFIRVNCGVHSIALI 543
            + G  R D  +  ++ C  H   L+
Sbjct: 71  -ESGVPRTDIWVTSKLWCNAHRAGLV 95



 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 19/39 (48%), Positives = 23/39 (58%)
 Frame = +3

Query: 513 KLWSTFHRTDLVETACRISLADLGLEFFDLFLIHNPMSL 629
           KLW   HR  LV  A   +L DL LE+ D +LIH P +L
Sbjct: 84  KLWCNAHRAGLVPLALEKTLQDLNLEYIDAYLIHWPFAL 122


>SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 275

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 21/70 (30%), Positives = 39/70 (55%)
 Frame = +1

Query: 295 LKLRDGTFMPVIALGTALLPPRLATEIVETAIDMGYRAIDTAYIYGNEKLIGKAIKNKID 474
           +KL +G   P  A G+ ++      + V  A+  GYR ID+A +Y NE   G+AI   ++
Sbjct: 6   VKLNNGLKCPQFAYGSYMVNRTKCFDSVYAALQCGYRHIDSAQMYHNEADCGRAILKFME 65

Query: 475 DGTVRRDELF 504
           +   +R++++
Sbjct: 66  ETGTKREDIW 75


>SPAC19G12.09 |||NADH/NADPH dependent indole-3-acetaldehyde
           reductase AKR3C2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 284

 Score = 36.3 bits (80), Expect = 0.004
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
 Frame = +1

Query: 319 MPVIALGTALLPP------RLATEIVETAIDMGYRAIDTAYIYGNEKLIGKAIKNKIDDG 480
           +P   +GTAL         R   + V+ A+  G+  ID A +YGNE+ +G A+K    + 
Sbjct: 12  VPAYGVGTALFKKEKGEINRTIVDSVKNALAAGFIHIDCAEVYGNEEEVGVALK----EA 67

Query: 481 TVRRDELFI 507
            V R +LFI
Sbjct: 68  NVPRSKLFI 76



 Score = 31.5 bits (68), Expect = 0.11
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 531 HRTDLVETACRISLADLGLEFFDLFLIHNPM 623
           H  D +  A   SL  LG ++ DL+L+H+P+
Sbjct: 82  HNVDNIPEALNESLRKLGTDYLDLYLLHSPI 112


>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 773

 Score = 32.7 bits (71), Expect = 0.046
 Identities = 22/89 (24%), Positives = 41/89 (46%)
 Frame = +1

Query: 268 KGSVKEVATLKLRDGTFMPVIALGTALLPPRLATEIVETAIDMGYRAIDTAYIYGNEKLI 447
           K S+K++       G    ++  G A++P  L  +++  A  +G R      + G  +LI
Sbjct: 366 KSSLKKMNQNSQLTGYIAVLLKKGLAIVPYTLPIKML-LADAVGKRTSKIGKLRGTNELI 424

Query: 448 GKAIKNKIDDGTVRRDELFIRVNCGVHSI 534
           G+ +  K  +G   RD+L   +    HS+
Sbjct: 425 GEGVLTKSKNGPSMRDQLLKNIQLQDHSL 453


>SPCC965.06 |||potassium channel subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 28.3 bits (60), Expect = 0.99
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
 Frame = +1

Query: 376 VETAIDMGYRAIDTAYIYGN---EKLIGKAIK 462
           ++ A D+G    DTA IY N   E ++GKAIK
Sbjct: 50  LKQAWDLGINTFDTAEIYSNGNSETVMGKAIK 81


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -2

Query: 546 PDQCDGMYSTIYPNEELVSPH-GAVVNLVLDRFSYELFVAVN 424
           PD+C  + ST+YP   ++ P   +V   + D FS   F+A +
Sbjct: 290 PDECVEVVSTLYPVLSIICPTLYSVYKDIFDLFSQRSFLATS 331


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = -2

Query: 312 PVA*FQSSHFLHAPFQLSFVSSATLVLYCSSVRSLVSRFCLPLSKRRRPLPGDSSIL 142
           PV+ F  S F  A F  S   + +L +  SSV   +    + LS    P   DSS++
Sbjct: 790 PVSNFWESEFASAVFPRSISKTTSLSVNNSSVNPSLDSEPVQLSNMEEPQHQDSSVV 846


>SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase
           YakC|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 540 DLVETACRISLADLGLEFFDLFLIH 614
           D +E A  +SL  LG++  DL+ +H
Sbjct: 102 DYIEKALDLSLKRLGIDCIDLYYVH 126


>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 875

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 597 RKTPSPGLPVKSCRPSPPDQCDG 529
           +K+PSP LP        PD  DG
Sbjct: 465 QKSPSPSLPPNELNEPEPDDMDG 487


>SPBC1271.15c |||translation initiation factor
           IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 548 HQISAMECTPQFTLMKSSSRLTVPSSILFLIAFPMSFSLP 429
           H  S M  T  F   KSS+ LT+P ++L + +F     +P
Sbjct: 70  HSSSPMHATKGFRFPKSSTPLTLP-AVLSVASFANLLQIP 108


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
 Frame = -3

Query: 341 VPKAMTGMN----VPSRSFKVATSFTLPFSLASSVLRPWSYIVHL*GLS 207
           VPKA   +N    +  RS KV+ S TL   L    L  +SY   L GLS
Sbjct: 531 VPKANVFINFISPIARRSPKVSVSTTLYTRLIEDALGEYSYPASLAGLS 579


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -3

Query: 398 PISIAVST-ISVANRGGSKAVPKAMTGMNVPSRSFKVATSFTLPFSLASSV 249
           PI+ + +T  S  +   S +V    T + VP+  F+  +S T P S +SSV
Sbjct: 196 PITTSSATHTSQFSTSSSSSVNSVHTPVMVPNPYFQYNSSMTAPSSSSSSV 246


>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 192

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 554 GLQDFTGRPGLGVFRPLPHPQSNVF 628
           GL D  G+      RPL +PQ++VF
Sbjct: 54  GLFDTAGQEDYDRLRPLSYPQTDVF 78


>SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 569

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 391 DMGYRAIDTAYIYGNE 438
           DMGY A+D AY+  +E
Sbjct: 233 DMGYEAVDLAYVLFHE 248


>SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 851

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +1

Query: 412 DTAYIYGNEKLIGKAIKNKIDDGTV 486
           D+  ++GN+ +I KA   + +DG+V
Sbjct: 228 DSVTVFGNKGIISKAFDIETEDGSV 252


>SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
 Frame = -3

Query: 392 SIAVSTISVANRGGSKAVPKAMTGMNVPSRSFKV----ATSFTLPFSLASS 252
           SI  STI+     GS+     +TG N P  + +V    A +FT   +  SS
Sbjct: 99  SIITSTITTTITSGSQLYTTTITGQNTPVDTVEVVIPTAGTFTTTLTSGSS 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,531,821
Number of Sequences: 5004
Number of extensions: 50672
Number of successful extensions: 167
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)