Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0317
         (640 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    26   0.35 
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    22   4.4  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    22   4.4  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    22   4.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   5.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.6  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   7.6  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 25.8 bits (54), Expect = 0.35
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = +1

Query: 7   TPSFRKSKILDIFLIFVLE--IFSKNKQNEDNLVHIVLL 117
           T S  KSKI  +FLI +L+  + ++ + NED+   +V L
Sbjct: 345 TESVLKSKIGQVFLITILDSKVSARIEMNEDDNTSLVSL 383


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = -3

Query: 275 LPFSLASSVLRPWSYIVHL--*GLSCLVFVC 189
           +PF++A  +L  W + +HL    L+C V  C
Sbjct: 90  MPFNVAYLLLGKWIFGIHLCKLWLTCDVLCC 120


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = -3

Query: 275 LPFSLASSVLRPWSYIVHL--*GLSCLVFVC 189
           +PF++A  +L  W + +HL    L+C V  C
Sbjct: 90  MPFNVAYLLLGKWIFGIHLCKLWLTCDVLCC 120


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = -3

Query: 275 LPFSLASSVLRPWSYIVHL--*GLSCLVFVC 189
           +PF++A  +L  W + +HL    L+C V  C
Sbjct: 90  MPFNVAYLLLGKWIFGIHLCKLWLTCDVLCC 120


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -3

Query: 341 VPKAMTGMNVPSR 303
           VPK++ G+NV SR
Sbjct: 239 VPKSVAGLNVSSR 251


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -2

Query: 513 YPNEELVSPHGAVVNLVLDRFS 448
           YP EE+    G +   V DR S
Sbjct: 620 YPGEEMGGSSGVLAKKVADRVS 641


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = -2

Query: 234 LYCSSVRS--LVSRFCLPLSKRRRPLPGDSSILTEVIFLNTKKHNMNQIIFILFVLTKDF 61
           +Y SSV S   V++   P++     +PGD+SI+ +         N + +IF+  V    F
Sbjct: 530 IYTSSVNSNLTVNQTVNPVAIN---IPGDTSIIVDSSTSGATIVNYSIMIFLSAVFISFF 586

Query: 60  Q 58
           Q
Sbjct: 587 Q 587


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,778
Number of Sequences: 438
Number of extensions: 3535
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)