Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0316
         (577 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po...    29   0.64 
SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual    27   2.6  
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    26   3.4  
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    25   6.0  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    25   7.9  
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    25   7.9  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    25   7.9  
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd...    25   7.9  

>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 549

 Score = 28.7 bits (61), Expect = 0.64
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 249 HHAQHRSHKYRSSRGHHEHPDTVP 320
           +H   RS  YRS R H+++ DT P
Sbjct: 331 YHPDSRSDSYRSKREHYDNRDTGP 354


>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 304

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 504 QFSVYKTEN*VAMFTLELPLYFHCHLRIRLQDRQ 403
           QFSV K +  + MF   LP Y+H H+ I   D +
Sbjct: 222 QFSVDKNQ--LKMFVHYLPSYYHLHVHILHVDHE 253


>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +3

Query: 222 QTPRSACSLHHAQHRSHKYRSSRGHHEH 305
           ++  S  + HH  H S K     GHH H
Sbjct: 275 KSSESGSTNHHNNHESDKDLHHEGHHHH 302


>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
 Frame = +1

Query: 412 LKSYPKVTVEVKWELQSEHGDLVFGL-----INAKLVYSTSR 522
           L++YP++  +  W+L  +  DL F L     + A +++ T R
Sbjct: 363 LRNYPRLDAKKLWDLTEDFLDLSFSLSRLSTLQAAIIFLTGR 404


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 168 TLWTVASLDPQSLKNLASALAKSTAAVMKNNI 73
           T W V   DP  LK  A+ + +   +++ +NI
Sbjct: 300 TRWVVDKADPNFLKPKAAMILEKILSILSSNI 331


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 273 KYRSSRGHHEHPDTVPPAGV 332
           +YRSS   H  P ++PP+ +
Sbjct: 88  RYRSSAARHFEPISIPPSAI 107


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -1

Query: 274 LCDRCCAWCKLQADRGVCVSLQYTMT 197
           LCD+   W +   D G  +S  YT T
Sbjct: 445 LCDQVSDWDRTLVDNGALISKLYTET 470


>SPBC2G2.08 |ade9||C-1-
           tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
           ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
           trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 969

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/27 (37%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = +1

Query: 256 HNIDRINTE--VHGVIMNIPIPFPLPE 330
           H + ++N +  VHGV++ +P+P  L E
Sbjct: 112 HELKKLNDDHTVHGVLVQLPLPKHLNE 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,333,710
Number of Sequences: 5004
Number of extensions: 46995
Number of successful extensions: 133
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)