Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0316
         (577 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,117...    29   2.0  
12_02_0025 + 12408933-12409464,12409590-12409686,12410121-124101...    29   2.7  
07_03_1530 + 27502546-27502671,27503487-27503561,27504670-275047...    29   3.5  
04_03_0434 + 15889712-15889797,15890086-15890287,15891184-158913...    28   4.6  
01_01_0170 + 1442526-1442618,1442705-1444210,1444312-1444365           28   4.6  
10_08_0405 - 17657678-17658110,17658219-17659663,17659708-17660076     27   8.1  
10_07_0139 + 13327851-13327880,13327999-13329049,13329089-133296...    27   8.1  

>01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,
            1171148-1171398,1171442-1171687,1172220-1172415,
            1172796-1172876,1172966-1173169,1173671-1173880,
            1173953-1174174,1174437-1174480,1174974-1175052,
            1175066-1175227,1175337-1175564,1175786-1175815,
            1175905-1176273,1176356-1176571,1177202-1177683,
            1177930-1177975
          Length = 1352

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = +3

Query: 216  ETQTPRSACSLHHAQHRSHKYRSSRGHHEHPDTVPPAGV*RVQGQRA 356
            E +  R+    H   H  H +R    HH+H  +  P    R  GQ+A
Sbjct: 1299 EYEKVRNGKRPHKTGHHRHHHRHHHHHHDHRSSSEPNDKKRQDGQKA 1345


>12_02_0025 +
           12408933-12409464,12409590-12409686,12410121-12410127,
           12412339-12412465,12412907-12413136
          Length = 330

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/62 (22%), Positives = 32/62 (51%)
 Frame = +1

Query: 160 PQRDGERMRRVVQSLYTEEKHRRHDRPAVYTTHNIDRINTEVHGVIMNIPIPFPLPESDA 339
           P +  + +++  ++  TE+K  +H+ PA+Y     D    +++G  +N  +  P+   + 
Sbjct: 210 PNKGVQNIQQKEENDVTEKKEEKHEAPAIYE----DSFQGKLNGAEINEDLEPPVDVDNI 265

Query: 340 CK 345
           CK
Sbjct: 266 CK 267


>07_03_1530 +
           27502546-27502671,27503487-27503561,27504670-27504746,
           27505576-27507522,27508478-27508946,27509898-27510079,
           27510746-27511208,27511295-27511691,27511810-27511937,
           27512106-27512273,27512452-27512559,27512830-27512838
          Length = 1382

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 256 HNIDRINTEVHGVIMNIPIPFPLPESDACKDNGL 357
           H++D  + E H ++ +IP   PL   +AC  N L
Sbjct: 585 HSLDTPDGEKHILLKDIPSTIPLDLKNACSQNSL 618


>04_03_0434 +
           15889712-15889797,15890086-15890287,15891184-15891323,
           15891420-15891559,15891762-15891913,15892773-15892902,
           15892990-15893141
          Length = 333

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 391 YKATLPILKSYPKVTVEVKWELQSEHGDL 477
           +KATL +L SY     E KWE ++   DL
Sbjct: 174 FKATLELLVSYKDQVAESKWENEAAAEDL 202


>01_01_0170 + 1442526-1442618,1442705-1444210,1444312-1444365
          Length = 550

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 21/76 (27%), Positives = 38/76 (50%)
 Frame = -2

Query: 348 VLARVRLRQGERYRDVHDDPVNFCIYAIDVVRGVNCRPIVASVFLFSIQ*LDDSSHPLTV 169
           VL R R+   E  ++  D+P +  + A   +  V   P   +  L+ +  L D +HPL V
Sbjct: 374 VLMR-RIAMYEYTKEGTDEPTHLYLNARSYMDPVTETPREGTSELWDVINLTDDNHPLHV 432

Query: 168 TLWTVASLDPQSLKNL 121
            L    +L+ +SL+++
Sbjct: 433 HLALFVALEQRSLRDV 448


>10_08_0405 - 17657678-17658110,17658219-17659663,17659708-17660076
          Length = 748

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 415 KSYPKVTVEVKWELQSEHGDLVFGLI 492
           K +P VTV+  WE++ +H ++  G I
Sbjct: 273 KEWPLVTVKTIWEMREKHKNIFHGKI 298


>10_07_0139 +
           13327851-13327880,13327999-13329049,13329089-13329648,
           13329757-13329904,13330935-13331024,13331148-13331208,
           13331301-13331450,13331571-13331629,13332148-13332282,
           13333028-13333119,13333210-13333278
          Length = 814

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 185 EESSSHCILKRNTDATIGLQFTPRTTSIA*IQK 283
           ++ +SH  L +N + T+G Q +   T IA +QK
Sbjct: 760 KQKASHKKLLQNAEKTVGAQLSDAETKIAEVQK 792


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,785,294
Number of Sequences: 37544
Number of extensions: 347329
Number of successful extensions: 1095
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1092
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)