Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0316
(577 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_14698| Best HMM Match : E1_DerP2_DerF2 (HMM E-Value=4.1e-31) 54 1e-07
SB_5273| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 2e-05
SB_1493| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.096
SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0) 31 0.67
SB_53355| Best HMM Match : CHCH (HMM E-Value=3.3e-07) 30 1.2
SB_8486| Best HMM Match : Granulin (HMM E-Value=0) 29 2.1
SB_53331| Best HMM Match : Phage_tail_S (HMM E-Value=2.8) 28 4.8
SB_3682| Best HMM Match : efhand (HMM E-Value=7.4e-05) 28 4.8
SB_44298| Best HMM Match : Herpes_US9 (HMM E-Value=8.9) 28 6.3
SB_41093| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8) 27 8.3
SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
SB_11996| Best HMM Match : FYVE (HMM E-Value=0.004) 27 8.3
SB_7247| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
>SB_14698| Best HMM Match : E1_DerP2_DerF2 (HMM E-Value=4.1e-31)
Length = 167
Score = 53.6 bits (123), Expect = 1e-07
Identities = 22/68 (32%), Positives = 38/68 (55%)
Frame = +1
Query: 280 EVHGVIMNIPIPFPLPESDACKDNGLTCPLKEGTLADYKATLPILKSYPKVTVEVKWELQ 459
EV G+I + +PFPL + C+++G+ CP+ G A + + YP + + +K+EL+
Sbjct: 74 EVFGIIGGVQVPFPLKNPNVCENHGVKCPINAGDSATLDLNIYVSNLYPSLKLIIKFELK 133
Query: 460 SEHGDLVF 483
LVF
Sbjct: 134 GGDNKLVF 141
>SB_5273| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 150
Score = 46.4 bits (105), Expect = 2e-05
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Frame = +1
Query: 259 NIDRINTEVHGVIMNIPIPFPLPESDACKDNGLTCPLKEGTLADYKATLPILKSYPKVTV 438
++ R H +I +P+P P+P SDAC+ GL+CP+ G + +K I +P +
Sbjct: 67 DLKRAKLSAHAIIDKLPLPLPIP-SDACQGYGLSCPVDSGVKSMFKIHQAIESEFPVGNL 125
Query: 439 EVKWEL-QSEHGDLVF 483
+K + S+ +VF
Sbjct: 126 TLKAAVTDSDTSQVVF 141
Score = 36.7 bits (81), Expect = 0.014
Identities = 18/60 (30%), Positives = 32/60 (53%)
Frame = +2
Query: 74 MLFFITAAVLLASAEAKFFKDCGSKLATVHNVTVSGCEESSSHCILKRNTDATIGLQFTP 253
++F A ++ +S + ++DCGS+ + + +S C+ S C+LKR T L F P
Sbjct: 7 VVFAFAAMLVPSSTKTIKYRDCGSQEGEIVGMDISPCD--SEPCVLKRGTSVDGSLTFIP 64
>SB_1493| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 741
Score = 33.9 bits (74), Expect = 0.096
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Frame = +1
Query: 268 RINTEVHGVIM--NIPIPFPLPESDACKDNGLTCPLKEGTLADYKATLPILKSYPKVTVE 441
RI+ V+ V+ N + P+ S N + C +K + + P+ + V VE
Sbjct: 395 RIDPLVNDVLQWTNASLGRPVDVSQTSNGNAVACQVKAINMTVRELVKPMFSACADVCVE 454
Query: 442 VKWELQSEHGDLVFG 486
V WE +SEH LV G
Sbjct: 455 VSWE-ESEHQCLVTG 468
>SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0)
Length = 919
Score = 31.1 bits (67), Expect = 0.67
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +3
Query: 249 HHAQHRSHKYRSSRGH 296
HH HR HK+RSS GH
Sbjct: 440 HHHHHRHHKHRSSSGH 455
>SB_53355| Best HMM Match : CHCH (HMM E-Value=3.3e-07)
Length = 599
Score = 30.3 bits (65), Expect = 1.2
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = +2
Query: 134 DCGSKLATVHNVTVSGCEESSSHCILKRNT-DATIGLQFTPRTTSIA*IQKFTGSS*TSR 310
D LA +H VT G H I K NT AT+ F RT + + ++ GS +R
Sbjct: 365 DTSIVLAWLHGVTQMGGTVGQDHAIRKCNTRSATLPRSFRNRTHATSRLRMSAGSDADTR 424
Query: 311 YRSPCRSL 334
RS+
Sbjct: 425 KNLRARSM 432
>SB_8486| Best HMM Match : Granulin (HMM E-Value=0)
Length = 878
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 6/42 (14%)
Frame = +1
Query: 319 PLPESDACKD------NGLTCPLKEGTLADYKATLPILKSYP 426
PLP + C D NG TC GT ++ + LP+ K P
Sbjct: 372 PLPNAVCCDDGVHCCPNGYTCNSSSGTCSEGDSVLPLFKKTP 413
Score = 27.5 bits (58), Expect = 8.3
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 6/42 (14%)
Frame = +1
Query: 319 PLPESDACKD------NGLTCPLKEGTLADYKATLPILKSYP 426
PLP + C D NG TC GT + LP+ K P
Sbjct: 297 PLPNAVCCDDGVHCCPNGYTCDTASGTCNKGDSVLPLFKKTP 338
>SB_53331| Best HMM Match : Phage_tail_S (HMM E-Value=2.8)
Length = 171
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 349 NGLTCPLKEGTLADYKATLPILKSYPKVTVEV 444
N + +KEGTL D++ATLP Y + VE+
Sbjct: 53 NKMYVAVKEGTLTDFRATLP--SHYLGINVEL 82
>SB_3682| Best HMM Match : efhand (HMM E-Value=7.4e-05)
Length = 340
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 349 NGLTCPLKEGTLADYKATLPILKSYPKVTVEV 444
N + +KEGTL D++ATLP Y + VE+
Sbjct: 53 NKMYVAVKEGTLTDFRATLP--SHYLGINVEL 82
>SB_44298| Best HMM Match : Herpes_US9 (HMM E-Value=8.9)
Length = 138
Score = 27.9 bits (59), Expect = 6.3
Identities = 8/19 (42%), Positives = 10/19 (52%)
Frame = +3
Query: 249 HHAQHRSHKYRSSRGHHEH 305
HH QH H++ HH H
Sbjct: 49 HHHQHNHHQHHHHHNHHHH 67
>SB_41093| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 586
Score = 27.9 bits (59), Expect = 6.3
Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Frame = +1
Query: 253 THNIDRINTEVHGVIMNIPIPFP-LPESDACKDNGLTCPLKEGTLADYK 396
+ N D+ N EV I P P E+ CK L PLK G D K
Sbjct: 505 SENADKENQEVPSAIKPAPKQRPSAKETRKCKRKALGKPLKAGLFEDKK 553
>SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8)
Length = 193
Score = 27.5 bits (58), Expect = 8.3
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +3
Query: 249 HHAQHRSHKYRSSRGHHEH 305
HH +R H+++ R HH H
Sbjct: 97 HHQHYRHHRHQHYRHHHHH 115
>SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 736
Score = 27.5 bits (58), Expect = 8.3
Identities = 9/28 (32%), Positives = 11/28 (39%)
Frame = +3
Query: 222 QTPRSACSLHHAQHRSHKYRSSRGHHEH 305
+ PR HH H H + HH H
Sbjct: 251 KNPRHRYHHHHHHHHQHNHHQHHHHHHH 278
>SB_11996| Best HMM Match : FYVE (HMM E-Value=0.004)
Length = 610
Score = 27.5 bits (58), Expect = 8.3
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = -2
Query: 165 LWTVASLDPQSLKNLASALAKSTAAVMKNNIFVDKMRFGSMKNNYKTAR*RVH 7
LW + + Q ++N++ +L +S M N I + G M N+K VH
Sbjct: 263 LWKSRNCEKQKVENVSESLDESCKVCMDNLIDCVLLECGHMLFNFKILTIEVH 315
>SB_7247| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 188
Score = 27.5 bits (58), Expect = 8.3
Identities = 10/25 (40%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Frame = +3
Query: 249 HHAQHRSHKYRSSRGHHE-HPDTVP 320
HH H H Y + HH+ HP P
Sbjct: 30 HHHHHHYHHYHNRHHHHQLHPQPPP 54
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,060,958
Number of Sequences: 59808
Number of extensions: 391471
Number of successful extensions: 1228
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1210
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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