Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0316
         (577 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69635-6|CAA93461.1|  695|Caenorhabditis elegans Hypothetical pr...    33   0.19 
AF016669-2|AAB66099.2|  455|Caenorhabditis elegans Hypothetical ...    29   2.4  
AL132949-11|CAB70104.2|  927|Caenorhabditis elegans Hypothetical...    28   4.1  
AC199169-2|ABO33254.1|  319|Caenorhabditis elegans Hypothetical ...    28   4.1  
U39652-2|AAA80404.1|  817|Caenorhabditis elegans Hypothetical pr...    27   7.2  
U10438-10|AAA19088.2|  345|Caenorhabditis elegans Hypothetical p...    27   7.2  
AF038619-1|AAB92076.2|  468|Caenorhabditis elegans Hypothetical ...    27   7.2  
AF000198-8|AAP68908.1|  435|Caenorhabditis elegans Collagen prot...    27   9.5  

>Z69635-6|CAA93461.1|  695|Caenorhabditis elegans Hypothetical
           protein F19B6.4 protein.
          Length = 695

 Score = 32.7 bits (71), Expect = 0.19
 Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = +2

Query: 161 HNVTVSGCEESSSHCILKRNTDA--TIGLQF 247
           HN T+SGCE +SS   LK + D+  T G++F
Sbjct: 625 HNSTISGCESNSSVATLKMSIDSNCTTGIEF 655


>AF016669-2|AAB66099.2|  455|Caenorhabditis elegans Hypothetical
           protein K10G6.4 protein.
          Length = 455

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = +1

Query: 175 ERMRRVVQSLYTEEKHRRHDRPAVYTTHNIDRINTEVHGVIM 300
           ER+   V+SLY + +    DR  V TT  +DR   EV  V M
Sbjct: 347 ERLELEVKSLYEKLQKSAEDRQKVETTLKLDRDRLEVSLVTM 388


>AL132949-11|CAB70104.2|  927|Caenorhabditis elegans Hypothetical
           protein Y53F4B.13 protein.
          Length = 927

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/56 (25%), Positives = 26/56 (46%)
 Frame = -2

Query: 195 DDSSHPLTVTLWTVASLDPQSLKNLASALAKSTAAVMKNNIFVDKMRFGSMKNNYK 28
           D+  H   +     +S  P+S ++  S LAK  AA  +     ++  F ++K  Y+
Sbjct: 11  DEYQHKEQMVTNRTSSFQPKSTEDSISKLAKMRAADRREEFMEERASFSAVKRGYQ 66


>AC199169-2|ABO33254.1|  319|Caenorhabditis elegans Hypothetical
           protein F38A1.15 protein.
          Length = 319

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +1

Query: 139 RVQTSDSPQRDGERMRRVVQSLYTEEKHRRHDRPAVYTTHNIDRIN-TEVHGVIMNI 306
           +VQT  SP   GE  +  V S YT E     D  A+ T   ++  N T++   ++NI
Sbjct: 231 KVQTEKSPYTYGETFKIYVNSSYT-EAFIYLDNNAIITHELVEGYNMTDIDSFVINI 286


>U39652-2|AAA80404.1|  817|Caenorhabditis elegans Hypothetical
           protein R07E4.5 protein.
          Length = 817

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +3

Query: 222 QTPRSACSLHHAQHRSHKYRSSRGHH 299
           Q P     LHHA H  H +R  R  H
Sbjct: 774 QMPHHQPHLHHAHHPVHPHRGPRASH 799


>U10438-10|AAA19088.2|  345|Caenorhabditis elegans Hypothetical
           protein B0280.10 protein.
          Length = 345

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 268 RINTEVHGVIMNIPIPFPLPESDACKD 348
           RI+ E +GV + IP+     E D C+D
Sbjct: 258 RISIETYGVFLTIPLELIKTELDICED 284


>AF038619-1|AAB92076.2|  468|Caenorhabditis elegans Hypothetical
           protein F56A11.4 protein.
          Length = 468

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = -2

Query: 474 VAMFTLELPLYFHCHLRIRLQDR---QCCFI 391
           ++     LP+YFHC+  IR Q R   + CFI
Sbjct: 412 ISSTAFRLPVYFHCNGDIRAQIRHFAKACFI 442


>AF000198-8|AAP68908.1|  435|Caenorhabditis elegans Collagen protein
           51 protein.
          Length = 435

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 367 GGRSARCPCTRQTPAGGTVSG 305
           G  +A CPC  +TPAGG   G
Sbjct: 305 GTDAAYCPCPPRTPAGGGGGG 325


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,115,494
Number of Sequences: 27780
Number of extensions: 278116
Number of successful extensions: 971
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)