Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0315
(676 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 86 4e-18
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 59 5e-10
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 56 6e-09
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 53 3e-08
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 52 1e-07
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 50 4e-07
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 48 9e-07
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 47 3e-06
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 46 4e-06
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 46 4e-06
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 46 5e-06
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 45 1e-05
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 44 2e-05
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 44 2e-05
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 44 2e-05
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 44 3e-05
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 44 3e-05
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 42 1e-04
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 40 2e-04
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 40 3e-04
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 40 3e-04
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 40 4e-04
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 39 6e-04
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 39 6e-04
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 39 8e-04
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 38 0.002
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 38 0.002
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 37 0.002
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 36 0.004
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 36 0.004
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 36 0.005
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 35 0.009
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 35 0.009
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 34 0.016
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 33 0.050
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 33 0.050
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 32 0.066
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 31 0.15
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 31 0.20
SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schiz... 30 0.27
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 29 0.81
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 29 0.81
SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy... 28 1.4
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ... 28 1.4
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch... 27 1.9
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual 27 2.5
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ... 27 3.3
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 26 4.3
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|... 26 4.3
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 26 4.3
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 26 4.3
SPAC869.10c |||proline specific permease |Schizosaccharomyces po... 26 4.3
SPBC16G5.19 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 5.7
SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe... 25 10.0
SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|c... 25 10.0
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 86.2 bits (204), Expect = 4e-18
Identities = 38/84 (45%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
Frame = +2
Query: 2 GGGDSQDHNSAE-APGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGR 178
G +S + N+ E +P +D K+F+GGL+WETTD LRD+F +GE+ V D TGR
Sbjct: 143 GAMESNEDNAEETSPFNREDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGR 202
Query: 179 SRGFAFIVFKAPESIDKVMAAGEH 250
SRGF F+ FK P+ +++VM+ H
Sbjct: 203 SRGFGFLTFKNPKCVNEVMSKEHH 226
Score = 72.5 bits (170), Expect = 5e-14
Identities = 34/90 (37%), Positives = 54/90 (60%), Gaps = 5/90 (5%)
Frame = +1
Query: 250 HHNNKKVDPKKAKARH-----GKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKN 414
H + K +DPK+A R K+FVGG+ + +++E RNFF++FG +L+ + DK
Sbjct: 226 HLDGKIIDPKRAIPREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTG 285
Query: 415 QRKGFCFITFESEQVVNDLLKTPKRTIGGK 504
+ +GF F+T+E+E V + P TI GK
Sbjct: 286 RPRGFGFVTYENESAVEATMSQPYITIHGK 315
Score = 60.9 bits (141), Expect = 2e-10
Identities = 23/59 (38%), Positives = 43/59 (72%)
Frame = +1
Query: 298 GKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 474
GK+F+GGL+ E +DD +R++F +FG +L+ + D T + +GF F+TF++ + VN+++
Sbjct: 163 GKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVM 221
Score = 51.2 bits (117), Expect = 1e-07
Identities = 19/59 (32%), Positives = 36/59 (61%)
Frame = +2
Query: 62 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 238
K+FVGG+ + T++E R+ F +G + + D +TGR RGF F+ ++ +++ M+
Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMS 306
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 59.3 bits (137), Expect = 5e-10
Identities = 26/74 (35%), Positives = 44/74 (59%)
Frame = +2
Query: 29 SAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 208
S ++ ++ LFVG L +ETTD +L++HFG G+I + + T +TG+ +GF F+ F
Sbjct: 218 SIQSSKKEPSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFP 277
Query: 209 APESIDKVMAAGEH 250
++ K M G +
Sbjct: 278 DIDTCMKAMELGHN 291
Score = 33.1 bits (72), Expect = 0.038
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +1
Query: 304 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 444
+FVG L E +D +++ F + G I V + + + KGF F+ F
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDF 276
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 55.6 bits (128), Expect = 6e-09
Identities = 24/62 (38%), Positives = 37/62 (59%)
Frame = +2
Query: 65 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 244
+FVG LS+ T+ +L FG G+I+SI + TDP +GR +GF ++ F +S K +
Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMN 427
Query: 245 EH 250
H
Sbjct: 428 GH 429
Score = 50.8 bits (116), Expect = 2e-07
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Frame = +2
Query: 41 PGRDDDRK--LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 214
P +D + +FVG LSW D+ L F YG I V D +GRS+G+ ++ F+ P
Sbjct: 255 PSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETP 314
Query: 215 ESIDKVMAA 241
E+ +AA
Sbjct: 315 EAAKAAVAA 323
Score = 39.1 bits (87), Expect = 6e-04
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +1
Query: 304 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 444
+FVG LS ++D++ F G I + +P D + KGF ++TF
Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTF 414
Score = 37.5 bits (83), Expect = 0.002
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +1
Query: 304 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 456
+FVG LS + D + F E+GTI+ + D + KG+ ++ FE+ +
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPE 315
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 53.2 bits (122), Expect = 3e-08
Identities = 24/67 (35%), Positives = 38/67 (56%)
Frame = +2
Query: 47 RDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 226
+D R +FVG L++E ++ L +FG G I+ + + DP T +GFA+I FK +D
Sbjct: 266 QDTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVD 325
Query: 227 KVMAAGE 247
K + E
Sbjct: 326 KALLLNE 332
Score = 36.3 bits (80), Expect = 0.004
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = +1
Query: 304 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 474
+FVG L+ E ++ + +F + G+I V + D N KGF +I F+ V+ L
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKAL 328
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 51.6 bits (118), Expect = 1e-07
Identities = 24/66 (36%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
Frame = +2
Query: 29 SAEAPGRDDDRK--LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIV 202
S G+++DRK LFVG L +++ + L+ HF G++ S+ + TD +GR +G+AF+
Sbjct: 80 SKRQKGKNNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVE 139
Query: 203 FKAPES 220
F P++
Sbjct: 140 FINPKT 145
Score = 41.1 bits (92), Expect = 1e-04
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +1
Query: 253 HNNKKVDPKKAKARHGKI--FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKG 426
H K +K K K+ FVG L + S + ++ F G + V +P DKT ++KG
Sbjct: 75 HKTLKSKRQKGKNNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKG 134
Query: 427 FCFITF 444
+ F+ F
Sbjct: 135 YAFVEF 140
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 49.6 bits (113), Expect = 4e-07
Identities = 23/53 (43%), Positives = 34/53 (64%)
Frame = +2
Query: 47 RDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 205
RDD L V LS +T ++ELRD F +G I+ + + D TGR++GFAF+ +
Sbjct: 198 RDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSY 250
Score = 37.9 bits (84), Expect = 0.001
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = +1
Query: 277 KKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 444
K+ + + V LS + ++E+R+ F FG I V + DK + KGF F+++
Sbjct: 195 KRERDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSY 250
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 48.4 bits (110), Expect = 9e-07
Identities = 18/61 (29%), Positives = 33/61 (54%)
Frame = +2
Query: 53 DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 232
D + ++VG + + T +EL+ HF + G + + + D TG +GFA+I F P +
Sbjct: 53 DAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNA 112
Query: 233 M 235
+
Sbjct: 113 L 113
Score = 36.3 bits (80), Expect = 0.004
Identities = 15/57 (26%), Positives = 31/57 (54%)
Frame = +1
Query: 304 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 474
++VG + ++ +E+++ F+ G++ V + DK KGF +I F +V + L
Sbjct: 57 VYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNAL 113
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 46.8 bits (106), Expect = 3e-06
Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF-ESEQVVNDLLK 477
++F+ L+ ++D++++ F FG + +V MP DK N KGF +I F +++ V L+
Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLE 383
Query: 478 TPKRTIGGK 504
+ G+
Sbjct: 384 LDAKPFQGR 392
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 46.4 bits (105), Expect = 4e-06
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Frame = +1
Query: 262 KKV-DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 438
KKV + K + + G ++VG L + ++R +FS+FG +L + M ++ K + FI
Sbjct: 92 KKVSENKNLQKKKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFI 151
Query: 439 TFESEQVVNDLLKT 480
FES V N + +T
Sbjct: 152 EFESLDVANVVAET 165
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 46.4 bits (105), Expect = 4e-06
Identities = 21/57 (36%), Positives = 32/57 (56%)
Frame = +2
Query: 65 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 235
LF+ L E D+ L+ F A+G I S + TD G+S+GF F+ + PE +K +
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAV 421
Score = 40.7 bits (91), Expect = 2e-04
Identities = 21/65 (32%), Positives = 33/65 (50%)
Frame = +1
Query: 271 DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 450
DP K G +F+ L I + + + FS FG IL ++ D+ N KG+ F+ F+S
Sbjct: 159 DPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGN-AKGYGFVHFDS 217
Query: 451 EQVVN 465
+ N
Sbjct: 218 VESAN 222
Score = 35.9 bits (79), Expect = 0.005
Identities = 20/57 (35%), Positives = 30/57 (52%)
Frame = +2
Query: 65 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 235
L+VG L T+ L + F + G + SI V D T RS G+A++ F E +K +
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKAL 138
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 46.0 bits (104), Expect = 5e-06
Identities = 20/53 (37%), Positives = 33/53 (62%)
Frame = +2
Query: 50 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 208
D + +F+ LS++T + ++ F YG IE I V + TG+S G+AF+VF+
Sbjct: 97 DPYKTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFE 149
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 44.8 bits (101), Expect = 1e-05
Identities = 17/51 (33%), Positives = 33/51 (64%)
Frame = +1
Query: 304 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 456
I++G L ++++D+I FSEFG +++ + DK + KGF F+ +E ++
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQR 83
Score = 41.5 bits (93), Expect = 1e-04
Identities = 17/56 (30%), Positives = 32/56 (57%)
Frame = +2
Query: 53 DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 220
D +++G L ++ + ++ F +GE IN+ D TG+S+GFAF+ ++ S
Sbjct: 29 DSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRS 84
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 44.4 bits (100), Expect = 2e-05
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Frame = +2
Query: 5 GGDSQDHNSAEAPGRDDDR---KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTG 175
G S D NS RD++ +FV L +E T++EL +HF +G + + DP T
Sbjct: 256 GDSSSDKNSINHEIRDNEGLEDTVFVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPATD 315
Query: 176 RSRGFAFIVFK 208
RS G FI F+
Sbjct: 316 RSLGRGFIKFR 326
Score = 41.9 bits (94), Expect = 8e-05
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = +2
Query: 65 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 229
LFV L+++T +L + F G I+ V T+P TG +RG+ F+ F E +
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQR 61
Score = 34.7 bits (76), Expect = 0.012
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +1
Query: 304 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 444
+FV L+ + D++ NFFS+ G I + + + +G+ F+TF
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTF 53
Score = 30.7 bits (66), Expect = 0.20
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +1
Query: 304 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 477
+FV L E ++ E+ N F +FG + ++ D ++ G FI F E+ + L+
Sbjct: 279 VFVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKFRYEKDCQNCLE 336
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 44.4 bits (100), Expect = 2e-05
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Frame = +2
Query: 71 VGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA-AGE 247
VG LS++ T+ +L D FG + SI + DP T RSRGF ++ F+ +++ +A +GE
Sbjct: 98 VGNLSFDLTENDLGDFFGE--GVTSIRLVIDPLTERSRGFGYVEFETADTLSAALALSGE 155
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 44.0 bits (99), Expect = 2e-05
Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Frame = +1
Query: 250 HHNNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRK-- 423
H + ++ + +A ++FVG LS+ EIR+ F GT+ +V +PF + + +
Sbjct: 28 HASAEQSNTPAQQADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLV 87
Query: 424 --GFCFITFESEQVVNDLLKT 480
G F+TF +++ V+ ++T
Sbjct: 88 PSGIAFVTFNNQEDVDKAIET 108
Score = 36.7 bits (81), Expect = 0.003
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 8/83 (9%)
Frame = +2
Query: 11 DSQDHNSAE---APGRD-DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGR 178
D+ H SAE P + DD ++FVG LS T E+R F G + + +
Sbjct: 24 DAAVHASAEQSNTPAQQADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRG 83
Query: 179 SR----GFAFIVFKAPESIDKVM 235
+R G AF+ F E +DK +
Sbjct: 84 TRLVPSGIAFVTFNNQEDVDKAI 106
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 43.6 bits (98), Expect = 3e-05
Identities = 23/68 (33%), Positives = 38/68 (55%)
Frame = +2
Query: 20 DHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFI 199
D+N + G + ++FV +S T ++LR HF ++GE+ +++K +P TG S G I
Sbjct: 82 DYNE-NSLGPEPPTQVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCI 140
Query: 200 VFKAPESI 223
F SI
Sbjct: 141 SFDKRSSI 148
Score = 34.3 bits (75), Expect = 0.016
Identities = 11/55 (20%), Positives = 29/55 (52%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVN 465
++FV +S ++ +++R F FG + ++++ + G C I+F+ ++
Sbjct: 95 QVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFDKRSSIS 149
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 43.6 bits (98), Expect = 3e-05
Identities = 17/59 (28%), Positives = 35/59 (59%)
Frame = +1
Query: 274 PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 450
P+ ++ +FV G++S + +DE++ FS+FGT+ V + + +GF F++F +
Sbjct: 93 PEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFST 151
Score = 41.9 bits (94), Expect = 8e-05
Identities = 20/69 (28%), Positives = 33/69 (47%)
Frame = +2
Query: 11 DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGF 190
D ++ SA + LFV G++ + EL+ F +G + + + +P T SRGF
Sbjct: 85 DKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGF 144
Query: 191 AFIVFKAPE 217
F+ F E
Sbjct: 145 GFLSFSTVE 153
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 41.5 bits (93), Expect = 1e-04
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Frame = +2
Query: 65 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK----APESIDKV 232
++VG L W T+D+ L D F G + + +P TGRS+GF + F+ A SI+K+
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQFENENDAASSIEKL 340
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 40.3 bits (90), Expect = 2e-04
Identities = 20/62 (32%), Positives = 32/62 (51%)
Frame = +2
Query: 53 DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 232
D R +FV L+ T +EL D F G + + D +GRS+G A++ F +S+
Sbjct: 238 DRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAA 297
Query: 233 MA 238
+A
Sbjct: 298 IA 299
Score = 36.7 bits (81), Expect = 0.003
Identities = 16/53 (30%), Positives = 34/53 (64%)
Frame = +2
Query: 62 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 220
+L V + + TD++++ F +G+IE ++++ D + RS+GF +I ++ P S
Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRD-DQNRSKGFGYIQYRNPIS 392
Score = 35.5 bits (78), Expect = 0.007
Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +1
Query: 304 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK-T 480
+FV L++ ++ E+ +FF + G + + ++ DK + KG ++ F E V + +
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIALS 301
Query: 481 PKRTIG 498
KR +G
Sbjct: 302 GKRLLG 307
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 39.9 bits (89), Expect = 3e-04
Identities = 21/63 (33%), Positives = 32/63 (50%)
Frame = +1
Query: 304 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP 483
++VG LS ++++I FS+ G I + M D+ GFCF+ + Q D LK
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSLKYI 93
Query: 484 KRT 492
RT
Sbjct: 94 SRT 96
Score = 33.1 bits (72), Expect = 0.038
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +2
Query: 65 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFI-VFKAPESIDKV 232
++VG LS+ TT++++ F GEI I + D T GF F+ F+ +++D +
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSL 90
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 39.9 bits (89), Expect = 3e-04
Identities = 18/71 (25%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Frame = +1
Query: 295 HGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF-ESEQVVNDL 471
H ++FVG L ++++D+ + FSE+ ++++ ++ D+ + + +GF F++F +S+Q +
Sbjct: 29 HFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDR-EGKTRGFGFVSFKDSDQFLKAW 87
Query: 472 LKTPKRTIGGK 504
+ + IG +
Sbjct: 88 REKNGKYIGSR 98
Score = 35.9 bits (79), Expect = 0.005
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +2
Query: 62 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 208
+LFVG L + D+ L F Y + V D G++RGF F+ FK
Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRD-REGKTRGFGFVSFK 78
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 39.5 bits (88), Expect = 4e-04
Identities = 16/41 (39%), Positives = 27/41 (65%)
Frame = +1
Query: 274 PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMP 396
P+ A + +FVGGLS +S++E++ F FG I+ V++P
Sbjct: 295 PQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIP 335
Score = 34.7 bits (76), Expect = 0.012
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 65 LFVGGLSWETTDKELRDHFGA-YGEIESINVKTDPNTGRSRGFAFIVF 205
+FVG LS + ++ F + Y +S + TDP T SRG+ F+ F
Sbjct: 188 IFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRF 235
Score = 28.7 bits (61), Expect = 0.81
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +2
Query: 65 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTG 175
+FVGGLS +++EL+ F +GEI + VK P G
Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEI--VYVKIPPGKG 339
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 39.1 bits (87), Expect = 6e-04
Identities = 23/55 (41%), Positives = 31/55 (56%)
Frame = +2
Query: 65 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 229
LFV L+ T D++L F +G+I S V D TG S +AFI F ES++K
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEK 300
Score = 32.3 bits (70), Expect = 0.066
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +1
Query: 304 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVV 462
+FV L+ D+++ FS FG I+ ++ DK + FI F++++ V
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESV 298
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 39.1 bits (87), Expect = 6e-04
Identities = 15/34 (44%), Positives = 25/34 (73%)
Frame = +1
Query: 304 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDK 405
+FVGGL+S +S+ +++ F FG IL +++PF K
Sbjct: 299 VFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGK 332
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 38.7 bits (86), Expect = 8e-04
Identities = 19/48 (39%), Positives = 31/48 (64%)
Frame = +2
Query: 65 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 208
LF+ LS++ T +E+ D FG YG + I + NT ++RG AF+V++
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQIRL---GNTVQTRGTAFVVYE 58
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 37.5 bits (83), Expect = 0.002
Identities = 12/47 (25%), Positives = 28/47 (59%)
Frame = +2
Query: 65 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 205
+FVG + ++ +++++ + F G +++ + DP TG +G+ F F
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEF 55
Score = 31.9 bits (69), Expect = 0.087
Identities = 15/69 (21%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +1
Query: 304 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFIT-FESEQVVNDLLKT 480
+FVG + ++S+ ++ F++ G + ++ D KG+ F F+SE + K
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68
Query: 481 PKRTIGGKE 507
+G ++
Sbjct: 69 NNSELGPRK 77
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 37.5 bits (83), Expect = 0.002
Identities = 19/68 (27%), Positives = 35/68 (51%)
Frame = +1
Query: 253 HNNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFC 432
H+NKK + ++ +R +++ GL SD+ + + + FG + + D N KG+
Sbjct: 282 HDNKKSN-MESTSRTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYG 340
Query: 433 FITFESEQ 456
F FE E+
Sbjct: 341 FACFEEEK 348
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 37.1 bits (82), Expect = 0.002
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +1
Query: 304 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF-ESEQVVNDLLKT 480
I V L+ ++ + I F +G I + MP K KG+C+I + +Q N + K
Sbjct: 101 ILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHDQAANAVDKM 160
Query: 481 PKRTIGGKEAM*SVQ 525
+ G+E S++
Sbjct: 161 NNAELDGEELFVSIK 175
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 36.3 bits (80), Expect = 0.004
Identities = 13/50 (26%), Positives = 29/50 (58%)
Frame = +2
Query: 65 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 214
++VG + +E ++++ D F G ++S + DP +G+ +G+ F + P
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDP 56
Score = 31.1 bits (67), Expect = 0.15
Identities = 10/47 (21%), Positives = 26/47 (55%)
Frame = +1
Query: 304 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 444
++VG + E++++++ + F + G + ++ D Q KG+ F +
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEY 53
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 36.3 bits (80), Expect = 0.004
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = +2
Query: 65 LFVGGLSWETTDKELRDHFGAYGE-IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 241
LFVG L ++ L D F A G+ +++ V D N GRS+G+ F+ + + E+ D + A
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDEN-GRSKGYGFVSYDSFETADAAIEA 159
Score = 27.1 bits (57), Expect = 2.5
Identities = 11/49 (22%), Positives = 25/49 (51%)
Frame = +1
Query: 304 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 450
+FVG L + + + + FS G +++ + KG+ F++++S
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDS 149
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 35.9 bits (79), Expect = 0.005
Identities = 14/63 (22%), Positives = 35/63 (55%)
Frame = +2
Query: 53 DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 232
+ R+L+V + ++ +K++ F YG++ES+ + N + +GF ++V + +
Sbjct: 755 EGRELYVTNIDFKVNEKDVETFFRDYGQVESVRIPKRFN--QHKGFGYVVMTTNQDAENA 812
Query: 233 MAA 241
++A
Sbjct: 813 LSA 815
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 35.1 bits (77), Expect = 0.009
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Frame = +2
Query: 20 DHNSAEAPGR--DDDRKLFVGGLSWETTDKELRDHFGAYGEIESI 148
+++ PG+ D+ ++VG + +D+E+ HF YG++ESI
Sbjct: 2 NNSKLSVPGQYEDESSTIYVGNIDSRLSDEEIIKHFSKYGQVESI 46
Score = 34.7 bits (76), Expect = 0.012
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Frame = +2
Query: 11 DSQDHNSAEAPGRD-DDRKLFVGGLSWE--TTDKELRDHFGAYGEIESINVKTDPNTGRS 181
DS +S P D L+V L T +L D F +G I S + PN+G S
Sbjct: 365 DSLRESSPSIPNSPIDPSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGIS 424
Query: 182 RGFAFIVFKAPES 220
+G+ F+ F+ E+
Sbjct: 425 KGYGFVAFRQIEA 437
Score = 33.9 bits (74), Expect = 0.022
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 15/99 (15%)
Frame = +1
Query: 256 NNKKVD-PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTI-------------LEVEM 393
NN K+ P + + I+VG + S +SD+EI FS++G + E
Sbjct: 2 NNSKLSVPGQYEDESSTIYVGNIDSRLSDEEIIKHFSKYGQVESIFRRLLDSFYPKEKAK 61
Query: 394 PFDKTKNQRKGFCFITFESEQVVNDLLKTPK-RTIGGKE 507
PF KN + + F+ F + + + ++LK K T+G ++
Sbjct: 62 PFKPPKNGVQ-YGFVKFVNAESIEEVLKDAKGMTLGQRK 99
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 35.1 bits (77), Expect = 0.009
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTK-NQRKGFCFITFESEQ 456
+I+VGGLSS I ++ + FS FG++ +E+ T + F ++ F +++
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNFRTDE 58
Score = 33.5 bits (73), Expect = 0.029
Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +2
Query: 56 DRKLFVGGLSWETTDKELRDHFGAYGEIESINV--KTDPNTGRSRGFAFIVFKAPE 217
+++++VGGLS +L F +G + ++ + K+ P G + FA++ F+ E
Sbjct: 4 EKRIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTP-VGTIQRFAYLNFRTDE 58
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 34.3 bits (75), Expect = 0.016
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 450
KI++ L + +D++ FG +L ++ + KGFCF F++
Sbjct: 311 KIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKN 360
Score = 28.3 bits (60), Expect = 1.1
Identities = 13/59 (22%), Positives = 27/59 (45%)
Frame = +2
Query: 50 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 226
D K+++ L + ++ + +G++ S + + G S+GF F FK P +
Sbjct: 307 DSKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAE 365
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 32.7 bits (71), Expect = 0.050
Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +1
Query: 277 KKAKARHGKIF-VGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 444
+ AK+ G I V G+ E +++++ + F++FG + + + D+ KG+ I +
Sbjct: 2 RPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEY 58
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 32.7 bits (71), Expect = 0.050
Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +2
Query: 53 DDRKLFVGGLSWETTDKELRDHF-GAYGEIESINVKTDPNTGRSRGFAFIVFKAP 214
++ K+ V L + T+ ++++ F + G + +++ PN GRS+G A I+F P
Sbjct: 53 EESKIIVSNLPTDVTEAQVKELFVKSIGPCKRVSLAYGPN-GRSKGIATIIFSRP 106
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 32.3 bits (70), Expect = 0.066
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 59 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPN 169
R +F+G L +KE+ + FG +G+IE I + + N
Sbjct: 299 RNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKN 335
Score = 26.2 bits (55), Expect = 4.3
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +1
Query: 304 IFVGGLSSEISDDEIRNFFSEFGTILEVEM 393
+F+G L S + EI F +FG I +++
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKI 330
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 31.1 bits (67), Expect = 0.15
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +2
Query: 101 KELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 214
++L + F +G I+S + + P+T S+G+ F+ F P
Sbjct: 435 QQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHP 472
Score = 27.5 bits (58), Expect = 1.9
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
Frame = +1
Query: 304 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKG------FCFITFESE 453
I+VG L S ++ F FG + M + KN+ F FITFE++
Sbjct: 22 IYVGNLPSTCQSSDLHELFEPFGNFSKFHM-LSRKKNKSTDSKSPTLFAFITFENK 76
Score = 25.4 bits (53), Expect = 7.6
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Frame = +1
Query: 304 IFVGGLSSEI--SDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFIT----FESEQVVN 465
+FV L I + ++ FS+FG I + + KG+ F++ FE+ Q +N
Sbjct: 421 LFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAIN 480
Query: 466 DL 471
L
Sbjct: 481 TL 482
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 30.7 bits (66), Expect = 0.20
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +1
Query: 334 SDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 486
+++ IR+FFS+FG + +VE+ N C + F S + N+ +P+
Sbjct: 255 NEENIRSFFSKFGVLEKVEL------NPTHHSCVLEFTSHEAANNAWSSPE 299
>SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein
Cwf23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 30.3 bits (65), Expect = 0.27
Identities = 12/43 (27%), Positives = 26/43 (60%)
Frame = +1
Query: 322 SSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 450
+ +++D +R+ +S FGT+ V + D +K ++ + I FE+
Sbjct: 176 ADQVNDAYLRSIYSSFGTLQNVVIQKDISKEKKYVYSIIVFET 218
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 28.7 bits (61), Expect = 0.81
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 59 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPN 169
R +F+G L T+ E+R+ +G I+ I + T+ N
Sbjct: 206 RNVFLGNLPNGITEDEIREDLEPFGPIDQIKIVTERN 242
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +2
Query: 26 NSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPN 169
N A A R +++G T + L++ F +GEIE +N + N
Sbjct: 403 NIALAVAGGASRNIYIGNADDSLTIERLKEDFEEFGEIEYVNFFREKN 450
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +1
Query: 304 IFVGGLSSEISDDEIRNFFSEFGTILEVEM 393
+F+G L + I++DEIR FG I ++++
Sbjct: 208 VFLGNLPNGITEDEIREDLEPFGPIDQIKI 237
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 28.7 bits (61), Expect = 0.81
Identities = 13/54 (24%), Positives = 26/54 (48%)
Frame = +1
Query: 268 VDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGF 429
+ P K +F+GG++ + + +R+ F FG++ + + N R GF
Sbjct: 396 IPPDSIKVYSRTLFLGGITRSVREPVLRSMFERFGSVQSLIL----NHNYRHGF 445
>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 354
Score = 27.9 bits (59), Expect = 1.4
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 35 EAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESI 148
E P LF+ G+ E D ++R HF YG ++S+
Sbjct: 204 EPPKDKKIASLFLIGVEDELADYKIRKHFEQYGPLKSV 241
>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1150
Score = 27.9 bits (59), Expect = 1.4
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +1
Query: 274 PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKN 414
P++ + +GK L+S ++E+RN FSEF LE E+ F+ ++
Sbjct: 946 PEEIRKLNGKKI---LNSFFDNEELRNEFSEFIQHLESEVSFNSLRS 989
>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 274
Score = 27.5 bits (58), Expect = 1.9
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +1
Query: 310 VGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKR 489
V L ++ + ++ + F F I V M +D+ + +G C + FE+ Q D KT +
Sbjct: 89 VENLHYQVLEKDVLSLFENFHPI-RVIMNYDRA-GRSEGSCDVYFETSQDAEDAQKTLQS 146
Query: 490 T 492
T
Sbjct: 147 T 147
>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1339
Score = 27.1 bits (57), Expect = 2.5
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = -2
Query: 537 LVLVLHASHRLLSTNCSFGSLKQIIYNLLRFKCD 436
+ ++ H + ++ + + G+L++I YNLL F CD
Sbjct: 711 MFMITHLADQISNRSMFIGALEEI-YNLLDFMCD 743
>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 26.6 bits (56), Expect = 3.3
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +1
Query: 253 HNNKKVDPKKAKARHGKIFVGGLSSEISDD 342
HN K+ + +K +A++G+ G+ E SD+
Sbjct: 71 HNKKREELQKLEAKYGEQMANGVDGEGSDE 100
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 26.2 bits (55), Expect = 4.3
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -2
Query: 588 LARVRRGHFACLCLRGHLVLVLHASHRLLSTNCSFGSLKQII 463
L+ V R ++ LRG L+ V ASH + N ++K+I+
Sbjct: 517 LSVVGRDYYGVFPLRGKLLNVREASHSQILNNKEIQAIKKIM 558
>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 785
Score = 26.2 bits (55), Expect = 4.3
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Frame = +1
Query: 253 HNNKKVDPKKAKARHGKIFVGGLSSEIS-----DDEIRNFFSEFGTILEVEMPFDKTKNQ 417
H+ K ++ ++A GK+ VG LSS + ++ + TI+ M D++
Sbjct: 346 HHGKLINETTSQALEGKMAVGRLSSNATMATLWVQKVLALWDRLNTIISTTMDADRSILN 405
Query: 418 RKGFCFITF 444
F+TF
Sbjct: 406 SLSDAFVTF 414
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 26.2 bits (55), Expect = 4.3
Identities = 15/60 (25%), Positives = 29/60 (48%)
Frame = +1
Query: 304 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP 483
++V L I+ E+R++F FG IL ++ N + + +EQ +N++ P
Sbjct: 178 VYVHQLPENITTQELRSYFLHFGEILYTQV----NNNSGRIVFAQRYFAEQAINEMNNFP 233
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 26.2 bits (55), Expect = 4.3
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 56 DRKLFVGGLSWETTDKELRDHFGAYGEI 139
+ +LFVG + + T +++ D F YG+I
Sbjct: 3 ETRLFVGRIPPQATREDMMDFFKGYGQI 30
Score = 25.8 bits (54), Expect = 5.7
Identities = 13/58 (22%), Positives = 30/58 (51%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 474
++FVG + + + +++ +FF +G IL+ ++ GF F+ E + D++
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQILDCKL--------MNGFGFVEVEDARDARDIV 54
>SPAC869.10c |||proline specific permease |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 552
Score = 26.2 bits (55), Expect = 4.3
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -2
Query: 570 GHFACLCLRGHLVLVLHASHRLLSTNCSFG 481
G+F + + LVL+ +H+L S N SFG
Sbjct: 484 GNFIAAYITLPIFLVLYVAHKLWSRNWSFG 513
>SPBC16G5.19 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 105
Score = 25.8 bits (54), Expect = 5.7
Identities = 10/41 (24%), Positives = 20/41 (48%)
Frame = -2
Query: 582 RVRRGHFACLCLRGHLVLVLHASHRLLSTNCSFGSLKQIIY 460
++ RG++ CLR + ++ HR +FG + +Y
Sbjct: 20 KIERGYWFIQCLRYCFIYIIKKQHRQADLPRNFGMRSKALY 60
>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 746
Score = 25.0 bits (52), Expect = 10.0
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Frame = -2
Query: 531 LVLHASHRLLSTNCS---FGSLKQIIYNLLRFKCDETE 427
L+ + S LL TN S S+ IIYN+ +FK ++E
Sbjct: 371 LLNNLSKLLLDTNISPLDASSIATIIYNMCKFKITKSE 408
>SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|chr
2|||Manual
Length = 279
Score = 25.0 bits (52), Expect = 10.0
Identities = 8/23 (34%), Positives = 10/23 (43%)
Frame = +2
Query: 500 ERRRCEACNTKTRWPRRHRHAKW 568
E +C C W RR H +W
Sbjct: 29 ESAQCNNCGGPFTWFRRRHHCRW 51
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,524,643
Number of Sequences: 5004
Number of extensions: 49785
Number of successful extensions: 227
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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