Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0315
(676 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 74 8e-14
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 69 3e-12
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 69 3e-12
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 69 4e-12
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 67 9e-12
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 67 9e-12
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 67 9e-12
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 66 2e-11
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 66 2e-11
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 66 2e-11
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 66 3e-11
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 66 3e-11
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 64 6e-11
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 64 8e-11
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 64 8e-11
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 63 1e-10
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 63 1e-10
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 63 1e-10
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 62 3e-10
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 62 4e-10
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 62 4e-10
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 61 6e-10
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 61 6e-10
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 60 1e-09
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 60 1e-09
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 60 1e-09
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 60 2e-09
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 60 2e-09
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 60 2e-09
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 60 2e-09
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 59 2e-09
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 59 2e-09
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 59 2e-09
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 59 2e-09
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 58 7e-09
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 58 7e-09
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 58 7e-09
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 57 9e-09
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 57 9e-09
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 56 2e-08
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 56 2e-08
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 56 2e-08
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 56 3e-08
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 55 4e-08
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 55 5e-08
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 55 5e-08
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 54 7e-08
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 54 7e-08
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 54 9e-08
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 54 9e-08
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 54 9e-08
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 54 9e-08
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 54 9e-08
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 54 9e-08
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 54 1e-07
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 53 2e-07
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 53 2e-07
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 53 2e-07
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 53 2e-07
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 53 2e-07
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 52 3e-07
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 52 4e-07
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 52 4e-07
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 52 5e-07
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 52 5e-07
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 52 5e-07
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 51 6e-07
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 50 1e-06
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 50 1e-06
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 50 1e-06
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 50 1e-06
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 50 1e-06
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 50 1e-06
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 50 2e-06
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 50 2e-06
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 50 2e-06
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 49 2e-06
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 49 3e-06
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 49 3e-06
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 48 4e-06
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 48 4e-06
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 48 4e-06
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 48 8e-06
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 47 1e-05
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 47 1e-05
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 47 1e-05
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 47 1e-05
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 47 1e-05
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 47 1e-05
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 46 2e-05
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 46 2e-05
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 46 2e-05
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 46 2e-05
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 46 2e-05
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 46 2e-05
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 46 2e-05
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 46 2e-05
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 46 2e-05
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 46 2e-05
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 46 3e-05
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 46 3e-05
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 46 3e-05
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ... 46 3e-05
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 45 4e-05
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 45 4e-05
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 45 4e-05
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 45 5e-05
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 45 5e-05
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 45 5e-05
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 45 5e-05
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 45 5e-05
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 44 7e-05
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 44 7e-05
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 44 7e-05
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 44 7e-05
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 44 7e-05
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 44 7e-05
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 44 9e-05
At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ... 44 9e-05
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 44 9e-05
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 44 9e-05
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 44 9e-05
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 44 1e-04
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 43 2e-04
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 43 2e-04
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 42 3e-04
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 42 3e-04
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 42 3e-04
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 42 3e-04
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 42 3e-04
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 42 3e-04
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 42 3e-04
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 42 3e-04
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 42 4e-04
At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein ... 42 4e-04
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 42 4e-04
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 42 4e-04
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 42 4e-04
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 42 4e-04
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 42 4e-04
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 42 5e-04
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 41 7e-04
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 41 9e-04
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 41 9e-04
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 40 0.001
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 40 0.001
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 40 0.001
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 40 0.001
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 40 0.001
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 40 0.002
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 40 0.002
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 40 0.002
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 40 0.002
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 40 0.002
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 40 0.002
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 39 0.003
At2g47310.1 68415.m05906 flowering time control protein-related ... 39 0.003
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ... 39 0.004
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 38 0.005
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 38 0.005
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 38 0.005
At5g51300.2 68418.m06360 splicing factor-related contains simila... 38 0.005
At5g51300.1 68418.m06359 splicing factor-related contains simila... 38 0.005
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 38 0.005
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 38 0.005
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 38 0.005
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 38 0.006
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 38 0.006
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 38 0.008
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 37 0.011
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 37 0.011
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 37 0.014
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 36 0.019
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 36 0.019
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 36 0.019
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 36 0.019
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 36 0.019
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 36 0.019
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 36 0.025
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 36 0.025
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 36 0.025
At3g21100.1 68416.m02667 RNA recognition motif (RRM)-containing ... 36 0.033
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 35 0.043
At5g19030.3 68418.m02263 RNA recognition motif (RRM)-containing ... 34 0.100
At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing ... 34 0.100
At5g12440.1 68418.m01462 zinc finger (CCCH-type) family protein ... 33 0.13
At1g72800.1 68414.m08416 nuM1-related contains similarity with n... 33 0.13
At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing ... 33 0.17
At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing ... 33 0.17
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 33 0.23
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 33 0.23
At1g69250.1 68414.m07936 nuclear transport factor 2 (NTF2) famil... 33 0.23
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 32 0.30
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 32 0.30
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 32 0.40
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 32 0.40
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 32 0.40
At3g63450.1 68416.m07144 RNA recognition motif (RRM)-containing ... 31 0.53
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 31 0.53
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 31 0.53
At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) famil... 31 0.70
At5g16840.1 68418.m01973 RNA recognition motif (RRM)-containing ... 31 0.70
At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RS... 31 0.70
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 31 0.70
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 31 0.70
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 31 0.93
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 31 0.93
At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 31 0.93
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 31 0.93
At2g42240.1 68415.m05228 RNA recognition motif (RRM)-containing ... 31 0.93
At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing ... 31 0.93
At5g04210.1 68418.m00409 RNA recognition motif (RRM)-containing ... 30 1.2
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ... 30 1.2
At2g33440.1 68415.m04099 splicing factor family protein similar ... 30 1.2
At1g60200.1 68414.m06781 splicing factor PWI domain-containing p... 30 1.2
At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing ... 30 1.6
At3g50670.2 68416.m05543 U1 small nuclear ribonucleoprotein 70 (... 29 2.1
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ... 29 2.1
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ... 29 2.1
At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein ... 29 2.8
At2g03640.1 68415.m00324 nuclear transport factor 2 (NTF2) famil... 29 2.8
At1g73490.1 68414.m08508 RNA recognition motif (RRM)-containing ... 29 2.8
At1g45100.1 68414.m05170 polyadenylate-binding protein, putative... 29 2.8
At1g13730.1 68414.m01612 nuclear transport factor 2 (NTF2) famil... 29 2.8
At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protei... 29 3.8
At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protei... 29 3.8
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ... 28 5.0
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ... 28 5.0
At5g03480.1 68418.m00304 expressed protein ; expression support... 28 5.0
At4g08750.1 68417.m01443 RNA recognition motif (RRM)-containing ... 28 5.0
At1g67950.3 68414.m07762 RNA recognition motif (RRM)-containing ... 28 5.0
At1g67950.2 68414.m07760 RNA recognition motif (RRM)-containing ... 28 5.0
At1g67950.1 68414.m07761 RNA recognition motif (RRM)-containing ... 28 5.0
At1g15890.1 68414.m01906 disease resistance protein (CC-NBS-LRR ... 28 5.0
At4g16810.1 68417.m02538 expressed protein similar to vernalizat... 28 6.6
At2g01740.1 68415.m00103 pentatricopeptide (PPR) repeat-containi... 28 6.6
At5g49760.1 68418.m06163 leucine-rich repeat family protein / pr... 27 8.7
At5g27640.1 68418.m03311 eukaryotic translation initiation facto... 27 8.7
At5g25780.1 68418.m03060 eukaryotic translation initiation facto... 27 8.7
At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing ... 27 8.7
At3g21215.1 68416.m02681 RNA-binding protein, putative contains ... 27 8.7
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 74.1 bits (174), Expect = 8e-14
Identities = 31/61 (50%), Positives = 41/61 (67%)
Frame = +2
Query: 53 DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 232
D KLFVGG+SWET + +LR+HF YGE+ V D TGR RGF F++F P +D+V
Sbjct: 4 DQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRV 63
Query: 233 M 235
+
Sbjct: 64 L 64
Score = 62.1 bits (144), Expect = 3e-10
Identities = 25/69 (36%), Positives = 44/69 (63%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 480
KIFVGGL ++D+E R +F +G + +V + +D+ N+ +GF F++F+SE V+ +L
Sbjct: 111 KIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHK 170
Query: 481 PKRTIGGKE 507
+ GK+
Sbjct: 171 TFHDLSGKQ 179
Score = 57.2 bits (132), Expect = 9e-09
Identities = 25/76 (32%), Positives = 41/76 (53%)
Frame = +2
Query: 8 GDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRG 187
G+ S+ + +K+FVGGL TD+E R +F YG + + + D T R RG
Sbjct: 93 GNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRG 152
Query: 188 FAFIVFKAPESIDKVM 235
F F+ F + +++D V+
Sbjct: 153 FGFVSFDSEDAVDSVL 168
Score = 49.2 bits (112), Expect = 2e-06
Identities = 23/70 (32%), Positives = 42/70 (60%)
Frame = +1
Query: 298 GKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 477
GK+FVGG+S E +D++R F+ +G + + + DK + +GF F+ F V++ +L+
Sbjct: 6 GKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQ 65
Query: 478 TPKRTIGGKE 507
K +I +E
Sbjct: 66 -EKHSIDTRE 74
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 68.9 bits (161), Expect = 3e-12
Identities = 28/66 (42%), Positives = 41/66 (62%)
Frame = +2
Query: 53 DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 232
D KLF+GG+SW+T + LR++F +GE+ + V + TGR RGF F+ F P ID+V
Sbjct: 4 DQGKLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRV 63
Query: 233 MAAGEH 250
+ H
Sbjct: 64 LQDKHH 69
Score = 56.4 bits (130), Expect = 2e-08
Identities = 26/75 (34%), Positives = 43/75 (57%)
Frame = +1
Query: 283 AKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVV 462
A R KIFVGGL ++ DE R +F +G + + + D+T + +GF F++F+SE V
Sbjct: 105 ANVRTKKIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSV 164
Query: 463 NDLLKTPKRTIGGKE 507
+ +L + GK+
Sbjct: 165 DLVLHKTFHDLNGKQ 179
Score = 51.6 bits (118), Expect = 5e-07
Identities = 20/60 (33%), Positives = 39/60 (65%)
Frame = +1
Query: 298 GKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 477
GK+F+GG+S + ++ +R +FS FG +L+V + +K + +GF F+ F V++ +L+
Sbjct: 6 GKLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQ 65
Score = 51.6 bits (118), Expect = 5e-07
Identities = 23/59 (38%), Positives = 33/59 (55%)
Frame = +2
Query: 59 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 235
+K+FVGGL T E R +F YG + + D T R RGF F+ F + +S+D V+
Sbjct: 110 KKIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVL 168
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 68.9 bits (161), Expect = 3e-12
Identities = 30/59 (50%), Positives = 39/59 (66%)
Frame = +2
Query: 62 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 238
K+FVGGL+WET + LR HF YGEI V D NTGRS+G+ F+ F+ PE+ + A
Sbjct: 25 KVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACA 83
Score = 52.4 bits (120), Expect = 3e-07
Identities = 24/70 (34%), Positives = 36/70 (51%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 480
K+FVGGL+ E + +R F ++G ILE + DK + KG+ F+TF +
Sbjct: 25 KVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACAD 84
Query: 481 PKRTIGGKEA 510
P I G+ A
Sbjct: 85 PTPIIDGRRA 94
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 68.5 bits (160), Expect = 4e-12
Identities = 29/53 (54%), Positives = 38/53 (71%)
Frame = +2
Query: 62 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 220
K+FVGGL+WET + LR HF YG+I V TD NTGRS+G+ F+ F+ PE+
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEA 77
Score = 52.0 bits (119), Expect = 4e-07
Identities = 24/70 (34%), Positives = 36/70 (51%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 480
K+FVGGL+ E + +R F ++G ILE + DK + KG+ F+TF +
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVD 84
Query: 481 PKRTIGGKEA 510
P I G+ A
Sbjct: 85 PTPIIDGRRA 94
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 67.3 bits (157), Expect = 9e-12
Identities = 27/58 (46%), Positives = 41/58 (70%)
Frame = +2
Query: 62 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 235
KLF+GG+SWET++ LRD+F ++GE+ + D TGR+RGF F+VF P ++V+
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVV 64
Score = 61.3 bits (142), Expect = 6e-10
Identities = 26/83 (31%), Positives = 50/83 (60%)
Frame = +1
Query: 256 NNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCF 435
+N + + KIFVGGL+S +++ E + +F++FG I +V + +D + +GF F
Sbjct: 92 SNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGF 151
Query: 436 ITFESEQVVNDLLKTPKRTIGGK 504
I+++SE+ V+ +L+ + GK
Sbjct: 152 ISYDSEEAVDKVLQKTFHELNGK 174
Score = 60.9 bits (141), Expect = 8e-10
Identities = 27/71 (38%), Positives = 42/71 (59%)
Frame = +2
Query: 38 APGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 217
+PG + +K+FVGGL+ T+ E + +F +G I + V D T R RGF FI + + E
Sbjct: 99 SPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEE 158
Query: 218 SIDKVMAAGEH 250
++DKV+ H
Sbjct: 159 AVDKVLQKTFH 169
Score = 52.0 bits (119), Expect = 4e-07
Identities = 24/68 (35%), Positives = 39/68 (57%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 480
K+F+GG+S E S+D +R++F FG +LE + D+ + +GF F+ F V ++
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66
Query: 481 PKRTIGGK 504
K I GK
Sbjct: 67 -KHIIDGK 73
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 67.3 bits (157), Expect = 9e-12
Identities = 27/58 (46%), Positives = 41/58 (70%)
Frame = +2
Query: 62 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 235
KLF+GG+SWET++ LRD+F ++GE+ + D TGR+RGF F+VF P ++V+
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVV 64
Score = 61.3 bits (142), Expect = 6e-10
Identities = 26/83 (31%), Positives = 50/83 (60%)
Frame = +1
Query: 256 NNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCF 435
+N + + KIFVGGL+S +++ E + +F++FG I +V + +D + +GF F
Sbjct: 92 SNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGF 151
Query: 436 ITFESEQVVNDLLKTPKRTIGGK 504
I+++SE+ V+ +L+ + GK
Sbjct: 152 ISYDSEEAVDKVLQKTFHELNGK 174
Score = 60.9 bits (141), Expect = 8e-10
Identities = 27/71 (38%), Positives = 42/71 (59%)
Frame = +2
Query: 38 APGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 217
+PG + +K+FVGGL+ T+ E + +F +G I + V D T R RGF FI + + E
Sbjct: 99 SPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEE 158
Query: 218 SIDKVMAAGEH 250
++DKV+ H
Sbjct: 159 AVDKVLQKTFH 169
Score = 52.0 bits (119), Expect = 4e-07
Identities = 24/68 (35%), Positives = 39/68 (57%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 480
K+F+GG+S E S+D +R++F FG +LE + D+ + +GF F+ F V ++
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66
Query: 481 PKRTIGGK 504
K I GK
Sbjct: 67 -KHIIDGK 73
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 67.3 bits (157), Expect = 9e-12
Identities = 32/72 (44%), Positives = 47/72 (65%)
Frame = +1
Query: 289 ARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVND 468
AR KIFVGGL S I++ E +N+F +FGTI +V + +D + +GF FITF+SE+ V+
Sbjct: 119 ARTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDM 178
Query: 469 LLKTPKRTIGGK 504
+L + GK
Sbjct: 179 VLHKTFHELNGK 190
Score = 66.9 bits (156), Expect = 1e-11
Identities = 26/58 (44%), Positives = 41/58 (70%)
Frame = +2
Query: 62 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 235
KLF+GG+SW+T ++ L+++FG YG++ + D TGR+RGF FIVF P ++V+
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVI 73
Score = 58.0 bits (134), Expect = 5e-09
Identities = 26/59 (44%), Positives = 37/59 (62%)
Frame = +2
Query: 59 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 235
+K+FVGGL T+ E +++F +G I + V D NT R RGF FI F + ES+D V+
Sbjct: 122 KKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVL 180
Score = 50.0 bits (114), Expect = 1e-06
Identities = 23/76 (30%), Positives = 46/76 (60%), Gaps = 4/76 (5%)
Frame = +1
Query: 298 GKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFE----SEQVVN 465
GK+F+GG+S + ++ ++ +F ++G ++E + D+T + +GF FI F +E+V+
Sbjct: 15 GKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIM 74
Query: 466 DLLKTPKRTIGGKEAM 513
D RT+ K+A+
Sbjct: 75 DKHIIDGRTVEAKKAV 90
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 66.5 bits (155), Expect = 2e-11
Identities = 30/71 (42%), Positives = 46/71 (64%)
Frame = +1
Query: 292 RHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDL 471
R KIFVGGL S I+++E +N+F +FGTI +V + +D + +GF FITF+S+ V+ +
Sbjct: 108 RTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRV 167
Query: 472 LKTPKRTIGGK 504
L + GK
Sbjct: 168 LHKTFHELNGK 178
Score = 64.9 bits (151), Expect = 5e-11
Identities = 27/58 (46%), Positives = 40/58 (68%)
Frame = +2
Query: 62 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 235
KLF+GG+SW+T ++ LRD+F YG++ + D TGR+RGF FIVF P ++V+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI 64
Score = 57.6 bits (133), Expect = 7e-09
Identities = 24/59 (40%), Positives = 39/59 (66%)
Frame = +2
Query: 59 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 235
+K+FVGGL T++E +++F +G I + V D NT R RGF FI F + +++D+V+
Sbjct: 110 KKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVL 168
Score = 52.8 bits (121), Expect = 2e-07
Identities = 25/76 (32%), Positives = 46/76 (60%), Gaps = 4/76 (5%)
Frame = +1
Query: 298 GKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFE----SEQVVN 465
GK+F+GG+S + ++ +R++FS +G ++E + D+ + +GF FI F SE+V+
Sbjct: 6 GKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIM 65
Query: 466 DLLKTPKRTIGGKEAM 513
D RT+ K+A+
Sbjct: 66 DKHIIDGRTVEAKKAV 81
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 66.5 bits (155), Expect = 2e-11
Identities = 30/71 (42%), Positives = 46/71 (64%)
Frame = +1
Query: 292 RHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDL 471
R KIFVGGL S I+++E +N+F +FGTI +V + +D + +GF FITF+S+ V+ +
Sbjct: 108 RTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRV 167
Query: 472 LKTPKRTIGGK 504
L + GK
Sbjct: 168 LHKTFHELNGK 178
Score = 64.9 bits (151), Expect = 5e-11
Identities = 27/58 (46%), Positives = 40/58 (68%)
Frame = +2
Query: 62 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 235
KLF+GG+SW+T ++ LRD+F YG++ + D TGR+RGF FIVF P ++V+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI 64
Score = 57.6 bits (133), Expect = 7e-09
Identities = 24/59 (40%), Positives = 39/59 (66%)
Frame = +2
Query: 59 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 235
+K+FVGGL T++E +++F +G I + V D NT R RGF FI F + +++D+V+
Sbjct: 110 KKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVL 168
Score = 52.8 bits (121), Expect = 2e-07
Identities = 25/76 (32%), Positives = 46/76 (60%), Gaps = 4/76 (5%)
Frame = +1
Query: 298 GKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFE----SEQVVN 465
GK+F+GG+S + ++ +R++FS +G ++E + D+ + +GF FI F SE+V+
Sbjct: 6 GKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIM 65
Query: 466 DLLKTPKRTIGGKEAM 513
D RT+ K+A+
Sbjct: 66 DKHIIDGRTVEAKKAV 81
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 66.5 bits (155), Expect = 2e-11
Identities = 30/71 (42%), Positives = 46/71 (64%)
Frame = +1
Query: 292 RHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDL 471
R KIFVGGL S I+++E +N+F +FGTI +V + +D + +GF FITF+S+ V+ +
Sbjct: 108 RTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRV 167
Query: 472 LKTPKRTIGGK 504
L + GK
Sbjct: 168 LHKTFHELNGK 178
Score = 64.9 bits (151), Expect = 5e-11
Identities = 27/58 (46%), Positives = 40/58 (68%)
Frame = +2
Query: 62 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 235
KLF+GG+SW+T ++ LRD+F YG++ + D TGR+RGF FIVF P ++V+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI 64
Score = 57.6 bits (133), Expect = 7e-09
Identities = 24/59 (40%), Positives = 39/59 (66%)
Frame = +2
Query: 59 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 235
+K+FVGGL T++E +++F +G I + V D NT R RGF FI F + +++D+V+
Sbjct: 110 KKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVL 168
Score = 52.8 bits (121), Expect = 2e-07
Identities = 25/76 (32%), Positives = 46/76 (60%), Gaps = 4/76 (5%)
Frame = +1
Query: 298 GKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFE----SEQVVN 465
GK+F+GG+S + ++ +R++FS +G ++E + D+ + +GF FI F SE+V+
Sbjct: 6 GKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIM 65
Query: 466 DLLKTPKRTIGGKEAM 513
D RT+ K+A+
Sbjct: 66 DKHIIDGRTVEAKKAV 81
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 65.7 bits (153), Expect = 3e-11
Identities = 25/68 (36%), Positives = 47/68 (69%)
Frame = +2
Query: 47 RDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 226
+ D+ KLF+GG+SW+T ++ L+++F ++GE+ + D TGR+RGF F+VF P ++
Sbjct: 2 QSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADP-AVA 60
Query: 227 KVMAAGEH 250
+++ +H
Sbjct: 61 EIVITEKH 68
Score = 60.1 bits (139), Expect = 1e-09
Identities = 26/71 (36%), Positives = 43/71 (60%)
Frame = +1
Query: 292 RHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDL 471
R KIFVGGL S +++ + + +F +FGT +V + +D + +GF FIT++SE+ V +
Sbjct: 106 RTRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKV 165
Query: 472 LKTPKRTIGGK 504
L + GK
Sbjct: 166 LLKTFHELNGK 176
Score = 56.8 bits (131), Expect = 1e-08
Identities = 29/79 (36%), Positives = 42/79 (53%)
Frame = +2
Query: 14 SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFA 193
S S PGR RK+FVGGL T+ + + +F +G + V D NT R RGF
Sbjct: 95 SSIQGSPGGPGRT--RKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFG 152
Query: 194 FIVFKAPESIDKVMAAGEH 250
FI + + E+++KV+ H
Sbjct: 153 FITYDSEEAVEKVLLKTFH 171
Score = 56.0 bits (129), Expect = 2e-08
Identities = 26/83 (31%), Positives = 52/83 (62%), Gaps = 2/83 (2%)
Frame = +1
Query: 295 HGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 474
+GK+F+GG+S + +++ ++ +FS FG ++E + D+T + +GF F+ F ++ V +++
Sbjct: 5 NGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVF-ADPAVAEIV 63
Query: 475 KTPKRTIGGK--EAM*SVQHQNQ 537
T K I G+ EA +V +Q
Sbjct: 64 ITEKHNIDGRLVEAKKAVPRDDQ 86
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 65.7 bits (153), Expect = 3e-11
Identities = 25/68 (36%), Positives = 47/68 (69%)
Frame = +2
Query: 47 RDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 226
+ D+ KLF+GG+SW+T ++ L+++F ++GE+ + D TGR+RGF F+VF P ++
Sbjct: 2 QSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADP-AVA 60
Query: 227 KVMAAGEH 250
+++ +H
Sbjct: 61 EIVITEKH 68
Score = 60.1 bits (139), Expect = 1e-09
Identities = 26/71 (36%), Positives = 43/71 (60%)
Frame = +1
Query: 292 RHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDL 471
R KIFVGGL S +++ + + +F +FGT +V + +D + +GF FIT++SE+ V +
Sbjct: 106 RTRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKV 165
Query: 472 LKTPKRTIGGK 504
L + GK
Sbjct: 166 LLKTFHELNGK 176
Score = 56.8 bits (131), Expect = 1e-08
Identities = 29/79 (36%), Positives = 42/79 (53%)
Frame = +2
Query: 14 SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFA 193
S S PGR RK+FVGGL T+ + + +F +G + V D NT R RGF
Sbjct: 95 SSIQGSPGGPGRT--RKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFG 152
Query: 194 FIVFKAPESIDKVMAAGEH 250
FI + + E+++KV+ H
Sbjct: 153 FITYDSEEAVEKVLLKTFH 171
Score = 56.0 bits (129), Expect = 2e-08
Identities = 26/83 (31%), Positives = 52/83 (62%), Gaps = 2/83 (2%)
Frame = +1
Query: 295 HGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 474
+GK+F+GG+S + +++ ++ +FS FG ++E + D+T + +GF F+ F ++ V +++
Sbjct: 5 NGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVF-ADPAVAEIV 63
Query: 475 KTPKRTIGGK--EAM*SVQHQNQ 537
T K I G+ EA +V +Q
Sbjct: 64 ITEKHNIDGRLVEAKKAVPRDDQ 86
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 64.5 bits (150), Expect = 6e-11
Identities = 28/64 (43%), Positives = 41/64 (64%)
Frame = +2
Query: 50 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 229
D + + F+GGL+W T+D+ LRD F YG + V D +GRSRGF FI F +++D+
Sbjct: 4 DPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDE 63
Query: 230 VMAA 241
+AA
Sbjct: 64 AIAA 67
Score = 46.8 bits (106), Expect = 1e-05
Identities = 18/58 (31%), Positives = 38/58 (65%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 474
+ F+GGL+ SD +R+ F ++G ++E ++ DK + +GF FITF+ ++ +++ +
Sbjct: 8 RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAI 65
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 64.1 bits (149), Expect = 8e-11
Identities = 25/58 (43%), Positives = 46/58 (79%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 474
KIFVGG+ S +++DE+++FF+++G ++E ++ D N+ +GF F+ F+SE+VV++LL
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELL 167
Score = 62.9 bits (146), Expect = 2e-10
Identities = 31/77 (40%), Positives = 42/77 (54%)
Frame = +2
Query: 5 GGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSR 184
G S++ N G K+F+GGL +TT+ HFG YGEI + D +TG+ R
Sbjct: 2 GSRSRNDNFQSGDGASPG-KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPR 60
Query: 185 GFAFIVFKAPESIDKVM 235
GF FI F P +DKV+
Sbjct: 61 GFGFITFADPSVVDKVI 77
Score = 60.5 bits (140), Expect = 1e-09
Identities = 25/62 (40%), Positives = 39/62 (62%)
Frame = +2
Query: 59 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 238
+K+FVGG+ T+ EL+D F YG + V D T RSRGF F++F + E +D++++
Sbjct: 109 KKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLS 168
Query: 239 AG 244
G
Sbjct: 169 KG 170
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/73 (32%), Positives = 39/73 (53%)
Frame = +1
Query: 289 ARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVND 468
A GKIF+GGL + ++ F ++G I + + D+ Q +GF FITF VV+
Sbjct: 16 ASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDK 75
Query: 469 LLKTPKRTIGGKE 507
+++ I GK+
Sbjct: 76 VIE-DTHVINGKQ 87
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 64.1 bits (149), Expect = 8e-11
Identities = 25/58 (43%), Positives = 46/58 (79%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 474
KIFVGG+ S +++DE+++FF+++G ++E ++ D N+ +GF F+ F+SE+VV++LL
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELL 167
Score = 62.9 bits (146), Expect = 2e-10
Identities = 31/77 (40%), Positives = 42/77 (54%)
Frame = +2
Query: 5 GGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSR 184
G S++ N G K+F+GGL +TT+ HFG YGEI + D +TG+ R
Sbjct: 2 GSRSRNDNFQSGDGASPG-KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPR 60
Query: 185 GFAFIVFKAPESIDKVM 235
GF FI F P +DKV+
Sbjct: 61 GFGFITFADPSVVDKVI 77
Score = 60.5 bits (140), Expect = 1e-09
Identities = 25/62 (40%), Positives = 39/62 (62%)
Frame = +2
Query: 59 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 238
+K+FVGG+ T+ EL+D F YG + V D T RSRGF F++F + E +D++++
Sbjct: 109 KKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLS 168
Query: 239 AG 244
G
Sbjct: 169 KG 170
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/73 (32%), Positives = 39/73 (53%)
Frame = +1
Query: 289 ARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVND 468
A GKIF+GGL + ++ F ++G I + + D+ Q +GF FITF VV+
Sbjct: 16 ASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDK 75
Query: 469 LLKTPKRTIGGKE 507
+++ I GK+
Sbjct: 76 VIE-DTHVINGKQ 87
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 63.3 bits (147), Expect = 1e-10
Identities = 32/74 (43%), Positives = 41/74 (55%)
Frame = +2
Query: 14 SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFA 193
SQ H+ G D K+FVGGL+ ETT E HFG YGEI + D TG+ RGF
Sbjct: 30 SQPHSGG---GVDSAGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFG 86
Query: 194 FIVFKAPESIDKVM 235
F+ + +DKV+
Sbjct: 87 FVTYADSSVVDKVI 100
Score = 61.7 bits (143), Expect = 4e-10
Identities = 27/63 (42%), Positives = 41/63 (65%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 480
KIFVGG+ S + DDE + FF +FG + E ++ D + + +GF F+T+ESE +V+ LL
Sbjct: 131 KIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAK 190
Query: 481 PKR 489
R
Sbjct: 191 GNR 193
Score = 58.0 bits (134), Expect = 5e-09
Identities = 22/62 (35%), Positives = 40/62 (64%)
Frame = +2
Query: 59 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 238
+K+FVGG+ D E ++ F +GE++ + D +TGRSRGF F+ +++ + +D ++A
Sbjct: 130 KKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLA 189
Query: 239 AG 244
G
Sbjct: 190 KG 191
Score = 47.6 bits (108), Expect = 8e-06
Identities = 23/67 (34%), Positives = 37/67 (55%)
Frame = +1
Query: 298 GKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 477
GKIFVGGL+ E + E F ++G I + + D+ Q +GF F+T+ VV+ +++
Sbjct: 42 GKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQ 101
Query: 478 TPKRTIG 498
IG
Sbjct: 102 DNHIIIG 108
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 63.3 bits (147), Expect = 1e-10
Identities = 26/59 (44%), Positives = 40/59 (67%)
Frame = +2
Query: 62 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 238
K+FVGGL+WET E+R +F +GEI + TD NTG+S+G+ F+ F+ +S + +A
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVA 76
Score = 58.8 bits (136), Expect = 3e-09
Identities = 27/70 (38%), Positives = 39/70 (55%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 480
K+FVGGL+ E DE+R +F +FG ILE + DK + KG+ F+TF +
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
Query: 481 PKRTIGGKEA 510
P I G++A
Sbjct: 78 PNPVIDGRKA 87
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 63.3 bits (147), Expect = 1e-10
Identities = 26/59 (44%), Positives = 40/59 (67%)
Frame = +2
Query: 62 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 238
K+FVGGL+WET E+R +F +GEI + TD NTG+S+G+ F+ F+ +S + +A
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVA 76
Score = 58.8 bits (136), Expect = 3e-09
Identities = 27/70 (38%), Positives = 39/70 (55%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 480
K+FVGGL+ E DE+R +F +FG ILE + DK + KG+ F+TF +
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
Query: 481 PKRTIGGKEA 510
P I G++A
Sbjct: 78 PNPVIDGRKA 87
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 62.1 bits (144), Expect = 3e-10
Identities = 27/53 (50%), Positives = 36/53 (67%)
Frame = +2
Query: 62 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 220
K+FVGGL+WET +R +F +GEI V TD NTGRS+G+ F+ FK E+
Sbjct: 23 KIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEA 75
Score = 52.8 bits (121), Expect = 2e-07
Identities = 25/70 (35%), Positives = 38/70 (54%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 480
KIFVGGL+ E D +R +F +FG I+E + DK + KG+ F+TF+ + +
Sbjct: 23 KIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQN 82
Query: 481 PKRTIGGKEA 510
I G+ A
Sbjct: 83 MNPVIDGRRA 92
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 61.7 bits (143), Expect = 4e-10
Identities = 27/58 (46%), Positives = 35/58 (60%)
Frame = +2
Query: 62 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 235
KLFVGGLSW T D L+ F ++GE+ V D TGRSRGF F+ F +S + +
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Score = 47.2 bits (107), Expect = 1e-05
Identities = 20/59 (33%), Positives = 33/59 (55%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 477
K+FVGGLS D ++ F+ FG + E + D+ + +GF F++F E N+ +K
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 61.7 bits (143), Expect = 4e-10
Identities = 27/58 (46%), Positives = 35/58 (60%)
Frame = +2
Query: 62 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 235
KLFVGGLSW T D L+ F ++GE+ V D TGRSRGF F+ F +S + +
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Score = 47.2 bits (107), Expect = 1e-05
Identities = 20/59 (33%), Positives = 33/59 (55%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 477
K+FVGGLS D ++ F+ FG + E + D+ + +GF F++F E N+ +K
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 61.3 bits (142), Expect = 6e-10
Identities = 26/83 (31%), Positives = 50/83 (60%)
Frame = +1
Query: 256 NNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCF 435
+N + + KIFVGGL+S +++ E + +F++FG I +V + +D + +GF F
Sbjct: 19 SNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGF 78
Query: 436 ITFESEQVVNDLLKTPKRTIGGK 504
I+++SE+ V+ +L+ + GK
Sbjct: 79 ISYDSEEAVDKVLQKTFHELNGK 101
Score = 60.9 bits (141), Expect = 8e-10
Identities = 27/71 (38%), Positives = 42/71 (59%)
Frame = +2
Query: 38 APGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 217
+PG + +K+FVGGL+ T+ E + +F +G I + V D T R RGF FI + + E
Sbjct: 26 SPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEE 85
Query: 218 SIDKVMAAGEH 250
++DKV+ H
Sbjct: 86 AVDKVLQKTFH 96
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 61.3 bits (142), Expect = 6e-10
Identities = 28/72 (38%), Positives = 40/72 (55%)
Frame = +1
Query: 295 HGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 474
H K+FVGGL+ E DE+R +F +FG ILE + DK + KG+ F+TF +
Sbjct: 16 HTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAV 75
Query: 475 KTPKRTIGGKEA 510
P I G++A
Sbjct: 76 ADPNPVIDGRKA 87
Score = 60.1 bits (139), Expect = 1e-09
Identities = 25/59 (42%), Positives = 39/59 (66%)
Frame = +2
Query: 62 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 238
K+FVGGL+WET E+R +F +GEI + TD TG+S+G+ F+ F+ +S + +A
Sbjct: 18 KVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVA 76
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 60.5 bits (140), Expect = 1e-09
Identities = 29/74 (39%), Positives = 41/74 (55%)
Frame = +2
Query: 14 SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFA 193
S DH + + KLFVGG+SWETT + ++FG +GE+ + TD TG RGF
Sbjct: 52 SVDHRHSSS-SMSSPGKLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFG 110
Query: 194 FIVFKAPESIDKVM 235
F+ F +KV+
Sbjct: 111 FVTFADSAVAEKVL 124
Score = 60.5 bits (140), Expect = 1e-09
Identities = 26/63 (41%), Positives = 42/63 (66%)
Frame = +2
Query: 59 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 238
RK+FVGGL + EL+++F YG+I + D +TGRSRGF F+ F+ +S+D++ +
Sbjct: 157 RKIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFS 216
Query: 239 AGE 247
G+
Sbjct: 217 DGK 219
Score = 59.3 bits (137), Expect = 2e-09
Identities = 28/77 (36%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Frame = +1
Query: 280 KAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQV 459
KA ++ KIFVGGL + +DE++N+F +G I+E ++ +D + +GF F+TF++E
Sbjct: 151 KAVSKTRKIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDS 210
Query: 460 VNDLLKTPK-RTIGGKE 507
V+ L K +G K+
Sbjct: 211 VDRLFSDGKVHELGDKQ 227
Score = 47.6 bits (108), Expect = 8e-06
Identities = 20/60 (33%), Positives = 35/60 (58%)
Frame = +1
Query: 298 GKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 477
GK+FVGG+S E + + N+F +FG +++ + D+ +GF F+TF V +L+
Sbjct: 66 GKLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLE 125
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 60.1 bits (139), Expect = 1e-09
Identities = 26/56 (46%), Positives = 38/56 (67%)
Frame = +2
Query: 62 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 229
K+FVGGL+WET LR++F +G+I V TD ++GRS+G+ F+ F PE+ K
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQK 63
Score = 53.6 bits (123), Expect = 1e-07
Identities = 25/70 (35%), Positives = 38/70 (54%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 480
K+FVGGL+ E +RN+F +FG I+E + DK+ + KG+ F+TF +
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
Query: 481 PKRTIGGKEA 510
P I G+ A
Sbjct: 68 PAPVIDGRRA 77
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 60.1 bits (139), Expect = 1e-09
Identities = 26/56 (46%), Positives = 38/56 (67%)
Frame = +2
Query: 62 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 229
K+FVGGL+WET LR++F +G+I V TD ++GRS+G+ F+ F PE+ K
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQK 63
Score = 53.6 bits (123), Expect = 1e-07
Identities = 25/70 (35%), Positives = 38/70 (54%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 480
K+FVGGL+ E +RN+F +FG I+E + DK+ + KG+ F+TF +
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
Query: 481 PKRTIGGKEA 510
P I G+ A
Sbjct: 68 PAPVIDGRRA 77
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 59.7 bits (138), Expect = 2e-09
Identities = 26/48 (54%), Positives = 31/48 (64%)
Frame = +2
Query: 62 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 205
KLF+GGLSW T D LRD F +G++ V D TGRSRGF F+ F
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNF 83
Score = 44.0 bits (99), Expect = 9e-05
Identities = 17/51 (33%), Positives = 31/51 (60%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESE 453
K+F+GGLS D +R+ F+ FG +++ ++ D+ + +GF F+ F E
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDE 86
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 59.7 bits (138), Expect = 2e-09
Identities = 26/48 (54%), Positives = 31/48 (64%)
Frame = +2
Query: 62 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 205
KLF+GGLSW T D LRD F +G++ V D TGRSRGF F+ F
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNF 83
Score = 44.0 bits (99), Expect = 9e-05
Identities = 17/51 (33%), Positives = 31/51 (60%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESE 453
K+F+GGLS D +R+ F+ FG +++ ++ D+ + +GF F+ F E
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDE 86
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 59.7 bits (138), Expect = 2e-09
Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Frame = +2
Query: 35 EAPGRDDD-RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 208
E+ RD R +FV GL W+TT + L+ F YGEI +V D +TGR++GF F++FK
Sbjct: 154 ESADRDSSQRNIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFK 212
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/62 (30%), Positives = 33/62 (53%)
Frame = +1
Query: 304 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP 483
IFV GL + + + ++ F +G I E + DK + KGF F+ F++ + LK P
Sbjct: 165 IFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALKNP 224
Query: 484 KR 489
++
Sbjct: 225 EK 226
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 59.7 bits (138), Expect = 2e-09
Identities = 26/58 (44%), Positives = 35/58 (60%)
Frame = +2
Query: 62 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 235
K+FVGG+S+ T + LR+ F YGE+ + D TGRSRGFAF+ F + E M
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM 92
Score = 48.0 bits (109), Expect = 6e-06
Identities = 19/68 (27%), Positives = 41/68 (60%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 480
KIFVGG+S + +R FS++G +++ ++ D+ + +GF F+TF S + ++ ++
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQL 94
Query: 481 PKRTIGGK 504
+ + G+
Sbjct: 95 DGQDLHGR 102
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 59.3 bits (137), Expect = 2e-09
Identities = 22/48 (45%), Positives = 33/48 (68%)
Frame = +2
Query: 62 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 205
KLF+GGLSW ++ L+D F ++GE+ + + D +GRSRGF F+ F
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDF 89
Score = 50.0 bits (114), Expect = 1e-06
Identities = 19/51 (37%), Positives = 32/51 (62%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESE 453
K+F+GGLS + + +++ FS FG + EV + +DK + +GF F+ F E
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEE 92
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 59.3 bits (137), Expect = 2e-09
Identities = 30/59 (50%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Frame = +2
Query: 35 EAPGRD-DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 208
EA RD RK+FV GL WETT + L F YGEIE V D TG+++GF F++FK
Sbjct: 95 EAADRDVTHRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFK 153
Score = 48.4 bits (110), Expect = 4e-06
Identities = 25/72 (34%), Positives = 38/72 (52%)
Frame = +1
Query: 295 HGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 474
H KIFV GL E + + + F +G I E + DK + KGF F+ F++ + + L
Sbjct: 103 HRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEAL 162
Query: 475 KTPKRTIGGKEA 510
K PK+ I + A
Sbjct: 163 KEPKKRILNRTA 174
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 59.3 bits (137), Expect = 2e-09
Identities = 30/59 (50%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Frame = +2
Query: 35 EAPGRD-DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 208
EA RD RK+FV GL WETT + L F YGEIE V D TG+++GF F++FK
Sbjct: 95 EAADRDVTHRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFK 153
Score = 48.4 bits (110), Expect = 4e-06
Identities = 25/72 (34%), Positives = 38/72 (52%)
Frame = +1
Query: 295 HGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 474
H KIFV GL E + + + F +G I E + DK + KGF F+ F++ + + L
Sbjct: 103 HRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEAL 162
Query: 475 KTPKRTIGGKEA 510
K PK+ I + A
Sbjct: 163 KEPKKRILNRTA 174
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 59.3 bits (137), Expect = 2e-09
Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Frame = +2
Query: 35 EAPGRD-DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 208
E+ RD R +FV G W+TT + L+ F +YGEIE +V D +TGR +G+ F++FK
Sbjct: 399 ESADRDIAQRNIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFK 457
Score = 40.7 bits (91), Expect = 9e-04
Identities = 17/62 (27%), Positives = 33/62 (53%)
Frame = +1
Query: 304 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP 483
IFV G + + + ++ F +G I E + DK + KG+ F+ F++ + + LK P
Sbjct: 410 IFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALKRP 469
Query: 484 KR 489
++
Sbjct: 470 EK 471
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 57.6 bits (133), Expect = 7e-09
Identities = 24/53 (45%), Positives = 36/53 (67%)
Frame = +2
Query: 62 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 220
K+FVGGL+WET + ++ HF +GEI V TD +GRS+G+ F+ F+ E+
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEA 66
Score = 49.2 bits (112), Expect = 2e-06
Identities = 23/70 (32%), Positives = 35/70 (50%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 480
K+FVGGL+ E + ++ F +FG ILE + DK + KG+ F+TF +
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 481 PKRTIGGKEA 510
I G+ A
Sbjct: 74 ATPVIDGRRA 83
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 57.6 bits (133), Expect = 7e-09
Identities = 24/53 (45%), Positives = 36/53 (67%)
Frame = +2
Query: 62 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 220
K+FVGGL+WET + ++ HF +GEI V TD +GRS+G+ F+ F+ E+
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEA 66
Score = 49.2 bits (112), Expect = 2e-06
Identities = 23/70 (32%), Positives = 35/70 (50%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 480
K+FVGGL+ E + ++ F +FG ILE + DK + KG+ F+TF +
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 481 PKRTIGGKEA 510
I G+ A
Sbjct: 74 ATPVIDGRRA 83
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 57.6 bits (133), Expect = 7e-09
Identities = 24/53 (45%), Positives = 36/53 (67%)
Frame = +2
Query: 62 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 220
K+FVGGL+WET + ++ HF +GEI V TD +GRS+G+ F+ F+ E+
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEA 66
Score = 49.2 bits (112), Expect = 2e-06
Identities = 23/70 (32%), Positives = 35/70 (50%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 480
K+FVGGL+ E + ++ F +FG ILE + DK + KG+ F+TF +
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 481 PKRTIGGKEA 510
I G+ A
Sbjct: 74 ATPVIDGRRA 83
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 57.2 bits (132), Expect = 9e-09
Identities = 24/53 (45%), Positives = 32/53 (60%)
Frame = +2
Query: 50 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 208
D + + FVGGL+W T D+ L F YG++ + D TGRSRGF F+ FK
Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFK 57
Score = 43.2 bits (97), Expect = 2e-04
Identities = 16/59 (27%), Positives = 36/59 (61%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 477
+ FVGGL+ D + F+++G +++ ++ D+ + +GF F+TF+ E+ + D ++
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIE 67
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 57.2 bits (132), Expect = 9e-09
Identities = 24/53 (45%), Positives = 32/53 (60%)
Frame = +2
Query: 50 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 208
D + + FVGGL+W T D+ L F YG++ + D TGRSRGF F+ FK
Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFK 57
Score = 43.2 bits (97), Expect = 2e-04
Identities = 16/59 (27%), Positives = 36/59 (61%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 477
+ FVGGL+ D + F+++G +++ ++ D+ + +GF F+TF+ E+ + D ++
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIE 67
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 56.4 bits (130), Expect = 2e-08
Identities = 24/64 (37%), Positives = 39/64 (60%)
Frame = +2
Query: 59 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 238
+K+FVGGLS TT++E + +F +G + V D T R RGF F+ + + +S++ VM
Sbjct: 120 KKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQ 179
Query: 239 AGEH 250
+ H
Sbjct: 180 SNFH 183
Score = 55.6 bits (128), Expect = 3e-08
Identities = 24/64 (37%), Positives = 42/64 (65%)
Frame = +1
Query: 289 ARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVND 468
+R KIFVGGLSS +++E +++F FG +V + D N+ +GF F+T++SE V
Sbjct: 117 SRTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEV 176
Query: 469 LLKT 480
++++
Sbjct: 177 VMQS 180
Score = 48.0 bits (109), Expect = 6e-06
Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Frame = +2
Query: 50 DDDR-KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 205
D DR KLFVGG++ ET+++ L+ +F YG + V + TG+ RGF F+ F
Sbjct: 2 DYDRYKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRF 54
Score = 48.0 bits (109), Expect = 6e-06
Identities = 21/61 (34%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESE-QVVNDLLK 477
K+FVGG++ E S++ ++ +FS +G +LE + +K + +GF F+ F ++ VV L
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRD 66
Query: 478 T 480
T
Sbjct: 67 T 67
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 56.0 bits (129), Expect = 2e-08
Identities = 22/50 (44%), Positives = 32/50 (64%)
Frame = +2
Query: 56 DRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 205
+ ++FVGGLSW+ T+++L F YG+I + +TGR RGF FI F
Sbjct: 11 ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITF 60
Score = 46.0 bits (104), Expect = 2e-05
Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK- 477
+IFVGGLS ++++ ++ + F +G I E ++ + + +GF FITF + +D +K
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Query: 478 TPKRTIGGK 504
R +G K
Sbjct: 73 MHGRELGNK 81
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 56.0 bits (129), Expect = 2e-08
Identities = 22/50 (44%), Positives = 32/50 (64%)
Frame = +2
Query: 56 DRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 205
+ ++FVGGLSW+ T+++L F YG+I + +TGR RGF FI F
Sbjct: 11 ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITF 60
Score = 46.0 bits (104), Expect = 2e-05
Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK- 477
+IFVGGLS ++++ ++ + F +G I E ++ + + +GF FITF + +D +K
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Query: 478 TPKRTIGGK 504
R +G K
Sbjct: 73 MHGRELGNK 81
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 55.6 bits (128), Expect = 3e-08
Identities = 24/60 (40%), Positives = 35/60 (58%)
Frame = +2
Query: 62 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 241
KLF+GG+++ + LR+ F YGE+ V D TGRSRGF F+ F + E+ + A
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100
Score = 47.6 bits (108), Expect = 8e-06
Identities = 15/59 (25%), Positives = 37/59 (62%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 477
K+F+GG++ + +D +R F+++G +++ + D+ + +GF F+TF S + + ++
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQ 99
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 55.2 bits (127), Expect = 4e-08
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Frame = +2
Query: 8 GDSQDHNSAEAPGRD--DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRS 181
GD + ++A D D +LFV L + T++EL +HF +G+I +++ D T RS
Sbjct: 242 GDGKVAQESKAVSDDVLDTGRLFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRS 301
Query: 182 RGFAFIVFKAPESIDKVM 235
RG A+I++ PE + M
Sbjct: 302 RGIAYILYLIPECAARAM 319
Score = 37.9 bits (84), Expect = 0.006
Identities = 18/48 (37%), Positives = 30/48 (62%)
Frame = +2
Query: 62 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 205
KL V +++E T +ELR F +G+I+S+ + N G+ G+AF+ F
Sbjct: 670 KLHVKNIAFEATKRELRQLFSPFGQIKSMRL-PKKNIGQYAGYAFVEF 716
Score = 28.3 bits (60), Expect = 5.0
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Frame = +2
Query: 41 PGRDDDRKLFVGGLSWETTDKELRDHFG---AYGEIESINVKTDPNTGR--SRGFAFIVF 205
P + L V LS++TTD+ L+ HF G+I S+ + + S G+ F+ F
Sbjct: 563 PDVTESNVLNVKNLSFKTTDEGLKKHFTKLVKQGKILSVTIIKHKKNEKYLSSGYGFVEF 622
Query: 206 KAPESIDKV 232
+ E+ V
Sbjct: 623 DSVETATSV 631
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 54.8 bits (126), Expect = 5e-08
Identities = 24/59 (40%), Positives = 39/59 (66%)
Frame = +2
Query: 62 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 238
+LFV GLS TT+++L+D F ++G++ V TD ++GRS+GF F+ + E +K A
Sbjct: 35 RLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKA 93
Score = 39.1 bits (87), Expect = 0.003
Identities = 14/48 (29%), Positives = 32/48 (66%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 444
++FV GLS +++++++ F+ FG +++ + D+ + KGF F+T+
Sbjct: 35 RLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTY 82
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 54.8 bits (126), Expect = 5e-08
Identities = 22/58 (37%), Positives = 36/58 (62%)
Frame = +2
Query: 50 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI 223
D++ + FVGGL+W T ++ + F +GE+ + D TGRS+GF F+ FK +S+
Sbjct: 41 DNEYRCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSM 98
Score = 44.4 bits (100), Expect = 7e-05
Identities = 22/69 (31%), Positives = 38/69 (55%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 480
+ FVGGL+ + I F+EFG + + ++ D+ + KGF F+TF+ E D ++T
Sbjct: 45 RCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDE----DSMRT 100
Query: 481 PKRTIGGKE 507
+ G+E
Sbjct: 101 AIDRMNGQE 109
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 54.4 bits (125), Expect = 7e-08
Identities = 24/56 (42%), Positives = 36/56 (64%)
Frame = +2
Query: 62 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 229
++FVGGLS E TD++L F +G+I + + +TGRSRGF FI F ++D+
Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDE 63
Score = 53.2 bits (122), Expect = 2e-07
Identities = 23/64 (35%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Frame = +1
Query: 289 ARHG-KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVN 465
A+ G +IFVGGLS E++D ++ FS FG IL+ ++ ++ + +GF FITF + ++
Sbjct: 3 AKEGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMD 62
Query: 466 DLLK 477
+ ++
Sbjct: 63 ESIR 66
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 54.4 bits (125), Expect = 7e-08
Identities = 21/61 (34%), Positives = 37/61 (60%)
Frame = +1
Query: 274 PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESE 453
P + K++V GLS ++D +R+ F +FG ++ + M DK N+ KGF F+ +E+E
Sbjct: 69 PSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETE 128
Query: 454 Q 456
+
Sbjct: 129 E 129
Score = 47.6 bits (108), Expect = 8e-06
Identities = 22/58 (37%), Positives = 34/58 (58%)
Frame = +2
Query: 62 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 235
KL+V GLS+ TT+ LRD F +G + +N+ D R +GFAF+ ++ E K +
Sbjct: 78 KLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAI 135
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 54.0 bits (124), Expect = 9e-08
Identities = 21/49 (42%), Positives = 32/49 (65%)
Frame = +2
Query: 62 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 208
+ FVGGL+W T D++L+ F +G++ + D +GRSRGF F+ FK
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFK 55
Score = 51.2 bits (117), Expect = 6e-07
Identities = 20/67 (29%), Positives = 43/67 (64%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 480
+ FVGGL+ +D++++ FS+FG +++ ++ D+ + +GF F+TF+ E+ + D ++
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 481 PKRTIGG 501
+ GG
Sbjct: 67 MNGSGGG 73
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 54.0 bits (124), Expect = 9e-08
Identities = 21/49 (42%), Positives = 32/49 (65%)
Frame = +2
Query: 62 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 208
+ FVGGL+W T D++L+ F +G++ + D +GRSRGF F+ FK
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFK 55
Score = 49.6 bits (113), Expect = 2e-06
Identities = 18/59 (30%), Positives = 40/59 (67%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 477
+ FVGGL+ +D++++ FS+FG +++ ++ D+ + +GF F+TF+ E+ + D ++
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 54.0 bits (124), Expect = 9e-08
Identities = 21/49 (42%), Positives = 32/49 (65%)
Frame = +2
Query: 62 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 208
+ FVGGL+W T D++L+ F +G++ + D +GRSRGF F+ FK
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFK 55
Score = 49.6 bits (113), Expect = 2e-06
Identities = 18/59 (30%), Positives = 40/59 (67%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 477
+ FVGGL+ +D++++ FS+FG +++ ++ D+ + +GF F+TF+ E+ + D ++
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 54.0 bits (124), Expect = 9e-08
Identities = 21/49 (42%), Positives = 32/49 (65%)
Frame = +2
Query: 62 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 208
+ FVGGL+W T D++L+ F +G++ + D +GRSRGF F+ FK
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFK 55
Score = 49.6 bits (113), Expect = 2e-06
Identities = 18/59 (30%), Positives = 40/59 (67%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 477
+ FVGGL+ +D++++ FS+FG +++ ++ D+ + +GF F+TF+ E+ + D ++
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 54.0 bits (124), Expect = 9e-08
Identities = 24/65 (36%), Positives = 37/65 (56%)
Frame = +2
Query: 56 DRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 235
+RKL V G+ W+ L+D+ +G++E V D +TGRSRGF ++ F + E +
Sbjct: 2 ERKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL 61
Query: 236 AAGEH 250
GEH
Sbjct: 62 -KGEH 65
Score = 50.8 bits (116), Expect = 8e-07
Identities = 27/69 (39%), Positives = 40/69 (57%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 480
KIFVG L E S D++R++F FG I + +P D ++ +GF F+TF +E V D +
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTF-AENGVADRVAR 299
Query: 481 PKRTIGGKE 507
I G+E
Sbjct: 300 RSHEICGQE 308
Score = 50.4 bits (115), Expect = 1e-06
Identities = 22/59 (37%), Positives = 34/59 (57%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 477
+IFV + S +S+ + R+ F +G I ++ MP D Q +G FITF S V DL++
Sbjct: 92 RIFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLME 150
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/70 (34%), Positives = 34/70 (48%)
Frame = +2
Query: 23 HNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIV 202
+ E R K+FVG L E + +LRD+FG +G I+ + DP RGF F+
Sbjct: 228 YGRGEPTTRGIGNKIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVT 287
Query: 203 FKAPESIDKV 232
F D+V
Sbjct: 288 FAENGVADRV 297
Score = 45.2 bits (102), Expect = 4e-05
Identities = 18/58 (31%), Positives = 33/58 (56%)
Frame = +2
Query: 62 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 235
++FV + ++ + R HF YGEI + + D N+ + RG FI F + +S++ +M
Sbjct: 92 RIFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLM 149
Score = 37.5 bits (83), Expect = 0.008
Identities = 16/59 (27%), Positives = 35/59 (59%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 477
K+ V G+ +I D ++++ S+FG + + + D++ + +GF ++TF S + + LK
Sbjct: 4 KLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALK 62
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 54.0 bits (124), Expect = 9e-08
Identities = 24/63 (38%), Positives = 35/63 (55%)
Frame = +2
Query: 50 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 229
D K++ G L W T + L+D FG + V + NTGRSRGF FI F++ E++
Sbjct: 216 DSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQS 275
Query: 230 VMA 238
+A
Sbjct: 276 ALA 278
Score = 50.0 bits (114), Expect = 1e-06
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Frame = +1
Query: 280 KAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES-EQ 456
+A G+++VG L I+ E+ F E GT+++V++ +DK ++ +GF F+T S E+
Sbjct: 110 QASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEE 169
Query: 457 VVNDLLKTPKRTIGGK 504
+ IGG+
Sbjct: 170 AKEAMQMFNSSQIGGR 185
Score = 44.0 bits (99), Expect = 9e-05
Identities = 22/73 (30%), Positives = 37/73 (50%)
Frame = +2
Query: 17 QDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAF 196
++ + +A G ++ +L+VG L + T EL FG G + + + D T RSRGF F
Sbjct: 104 EEKQTTQASG--EEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGF 161
Query: 197 IVFKAPESIDKVM 235
+ + E + M
Sbjct: 162 VTMGSIEEAKEAM 174
Score = 35.9 bits (79), Expect = 0.025
Identities = 15/60 (25%), Positives = 33/60 (55%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 480
K++ G L ++ +++ F + +L ++ +++ + +GF FI+FES + V L T
Sbjct: 220 KVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALAT 279
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 53.6 bits (123), Expect = 1e-07
Identities = 24/51 (47%), Positives = 32/51 (62%)
Frame = +2
Query: 59 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKA 211
RK+FV GL W+T L D F YGEIE D +G+S+G+ FI+FK+
Sbjct: 128 RKIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKS 178
Score = 46.8 bits (106), Expect = 1e-05
Identities = 22/67 (32%), Positives = 34/67 (50%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 480
KI+V +S++I ++ FFS FG I E + DK + KGF + S + L+
Sbjct: 228 KIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEE 287
Query: 481 PKRTIGG 501
P +T G
Sbjct: 288 PHKTFEG 294
Score = 45.2 bits (102), Expect = 4e-05
Identities = 21/59 (35%), Positives = 35/59 (59%)
Frame = +2
Query: 59 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 235
RK++V +S + ++L + F +GEIE + D TGR +GFA V+++ ES K +
Sbjct: 227 RKIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKAL 285
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 53.2 bits (122), Expect = 2e-07
Identities = 24/53 (45%), Positives = 33/53 (62%)
Frame = +2
Query: 62 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 220
K++VGGL W T + L + F +GEI +NV D T RS+G+ F+ FK ES
Sbjct: 14 KIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAES 66
Score = 49.6 bits (113), Expect = 2e-06
Identities = 23/68 (33%), Positives = 37/68 (54%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 480
KI+VGGL + + NFF FG I+ V + D+ ++ +G+ F+TF+ + K
Sbjct: 14 KIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKD 73
Query: 481 PKRTIGGK 504
P TI G+
Sbjct: 74 PNPTIEGR 81
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 53.2 bits (122), Expect = 2e-07
Identities = 21/49 (42%), Positives = 33/49 (67%)
Frame = +2
Query: 62 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 208
K+FVG L+W TT +LR +F +G++ NV ++ GRS+G+ FI F+
Sbjct: 13 KIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFR 61
Score = 44.4 bits (100), Expect = 7e-05
Identities = 21/68 (30%), Positives = 36/68 (52%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 480
KIFVG L+ + D++R +F +FG +++ + + + KG+ FITF L+
Sbjct: 13 KIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVRALQN 72
Query: 481 PKRTIGGK 504
K I G+
Sbjct: 73 SKPIIDGR 80
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 52.8 bits (121), Expect = 2e-07
Identities = 22/50 (44%), Positives = 33/50 (66%)
Frame = +2
Query: 56 DRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 205
DRKL+VG L + ++ +LR F A+G +E + + DP TG+ +GF FI F
Sbjct: 264 DRKLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQF 313
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/48 (39%), Positives = 28/48 (58%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 444
K++VG L +S+ ++R F FG + V++P D Q KGF FI F
Sbjct: 266 KLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQF 313
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 52.8 bits (121), Expect = 2e-07
Identities = 22/49 (44%), Positives = 33/49 (67%)
Frame = +2
Query: 62 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 208
K+FVGGL+W+T + + DHF YG+I + +D T RS+G+ F+ FK
Sbjct: 18 KVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFK 66
Score = 44.0 bits (99), Expect = 9e-05
Identities = 21/70 (30%), Positives = 37/70 (52%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 480
K+FVGGL+ + + + + F ++G ILE + DK + KG+ F+TF+ + +
Sbjct: 18 KVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACED 77
Query: 481 PKRTIGGKEA 510
I G+ A
Sbjct: 78 STPIINGRRA 87
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 52.8 bits (121), Expect = 2e-07
Identities = 25/63 (39%), Positives = 35/63 (55%)
Frame = +2
Query: 50 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 229
+ K++VG L W T LR+HF +G I S V D TGR+R FAF+ F + E D
Sbjct: 209 ESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDA 268
Query: 230 VMA 238
++
Sbjct: 269 ALS 271
Score = 41.5 bits (93), Expect = 5e-04
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Frame = +1
Query: 274 PKKA---KARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 444
PKK +++H K++VG L D +RN FS+FGTI+ + D+ + + F F++F
Sbjct: 202 PKKILMYESQH-KVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSF 260
Query: 445 ES 450
S
Sbjct: 261 TS 262
Score = 31.5 bits (68), Expect = 0.53
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +2
Query: 104 ELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 241
+L D F +G + S+ V +P TG SRG ++ + S +A+
Sbjct: 123 QLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIAS 168
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 52.4 bits (120), Expect = 3e-07
Identities = 25/70 (35%), Positives = 44/70 (62%)
Frame = +2
Query: 11 DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGF 190
DS+D + +E+P +KLF+ GLS+ T++K LR F +GE+ + + D + RS+G+
Sbjct: 267 DSRDQDDSESPPVKT-KKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGY 325
Query: 191 AFIVFKAPES 220
AF+ + E+
Sbjct: 326 AFLEYTTEEA 335
Score = 47.6 bits (108), Expect = 8e-06
Identities = 22/77 (28%), Positives = 40/77 (51%)
Frame = +1
Query: 247 THHNNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKG 426
T + + D + + K+F+ GLS S+ +R F FG ++EV++ DK + KG
Sbjct: 265 TQDSRDQDDSESPPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKG 324
Query: 427 FCFITFESEQVVNDLLK 477
+ F+ + +E+ LK
Sbjct: 325 YAFLEYTTEEAAGTALK 341
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 52.0 bits (119), Expect = 4e-07
Identities = 26/75 (34%), Positives = 42/75 (56%)
Frame = +2
Query: 26 NSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 205
+ AE PG L+V GLS T+++L DHF G++ +++ DP T SRGF FI
Sbjct: 38 SDAENPGNS----LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISM 93
Query: 206 KAPESIDKVMAAGEH 250
K+ ++ + + +H
Sbjct: 94 KSVGDANRCIRSLDH 108
Score = 35.1 bits (77), Expect = 0.043
Identities = 14/59 (23%), Positives = 34/59 (57%)
Frame = +1
Query: 304 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 480
++V GLS +++ ++ + F++ G + +V + D + +GF FI+ +S N +++
Sbjct: 47 LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRS 105
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 52.0 bits (119), Expect = 4e-07
Identities = 26/75 (34%), Positives = 42/75 (56%)
Frame = +2
Query: 26 NSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 205
+ AE PG L+V GLS T+++L DHF G++ +++ DP T SRGF FI
Sbjct: 68 SDAENPGNS----LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISM 123
Query: 206 KAPESIDKVMAAGEH 250
K+ ++ + + +H
Sbjct: 124 KSVGDANRCIRSLDH 138
Score = 35.1 bits (77), Expect = 0.043
Identities = 14/59 (23%), Positives = 34/59 (57%)
Frame = +1
Query: 304 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 480
++V GLS +++ ++ + F++ G + +V + D + +GF FI+ +S N +++
Sbjct: 77 LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRS 135
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 51.6 bits (118), Expect = 5e-07
Identities = 22/51 (43%), Positives = 33/51 (64%)
Frame = +2
Query: 59 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKA 211
RK+FV GL W+T + L + F YGEIE D +G+S+G+ FI++K+
Sbjct: 140 RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKS 190
Score = 50.0 bits (114), Expect = 1e-06
Identities = 23/70 (32%), Positives = 38/70 (54%)
Frame = +1
Query: 295 HGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 474
H KIFV GL + + + F ++G I + + FDK + KG+ FI ++S + L
Sbjct: 139 HRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
Query: 475 KTPKRTIGGK 504
K P++ IG +
Sbjct: 199 KQPQKKIGSR 208
Score = 49.2 bits (112), Expect = 2e-06
Identities = 22/67 (32%), Positives = 36/67 (53%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 480
KI+V + +E+ ++ FFS+FG I E + DK + KGFC ++S + L+
Sbjct: 246 KIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEE 305
Query: 481 PKRTIGG 501
P +T G
Sbjct: 306 PHKTFEG 312
Score = 40.7 bits (91), Expect = 9e-04
Identities = 19/59 (32%), Positives = 32/59 (54%)
Frame = +2
Query: 59 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 235
+K++V + E ++L F +GEIE + D TGR +GF V+K+ ES + +
Sbjct: 245 KKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRAL 303
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 51.6 bits (118), Expect = 5e-07
Identities = 22/51 (43%), Positives = 33/51 (64%)
Frame = +2
Query: 59 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKA 211
RK+FV GL W+T + L + F YGEIE D +G+S+G+ FI++K+
Sbjct: 140 RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKS 190
Score = 50.0 bits (114), Expect = 1e-06
Identities = 23/70 (32%), Positives = 38/70 (54%)
Frame = +1
Query: 295 HGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 474
H KIFV GL + + + F ++G I + + FDK + KG+ FI ++S + L
Sbjct: 139 HRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
Query: 475 KTPKRTIGGK 504
K P++ IG +
Sbjct: 199 KQPQKKIGSR 208
Score = 49.2 bits (112), Expect = 2e-06
Identities = 22/67 (32%), Positives = 36/67 (53%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 480
KI+V + +E+ ++ FFS+FG I E + DK + KGFC ++S + L+
Sbjct: 246 KIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEE 305
Query: 481 PKRTIGG 501
P +T G
Sbjct: 306 PHKTFEG 312
Score = 40.7 bits (91), Expect = 9e-04
Identities = 19/59 (32%), Positives = 32/59 (54%)
Frame = +2
Query: 59 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 235
+K++V + E ++L F +GEIE + D TGR +GF V+K+ ES + +
Sbjct: 245 KKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRAL 303
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 51.6 bits (118), Expect = 5e-07
Identities = 22/51 (43%), Positives = 33/51 (64%)
Frame = +2
Query: 59 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKA 211
RK+FV GL W+T + L + F YGEIE D +G+S+G+ FI++K+
Sbjct: 140 RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKS 190
Score = 50.0 bits (114), Expect = 1e-06
Identities = 23/70 (32%), Positives = 38/70 (54%)
Frame = +1
Query: 295 HGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 474
H KIFV GL + + + F ++G I + + FDK + KG+ FI ++S + L
Sbjct: 139 HRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
Query: 475 KTPKRTIGGK 504
K P++ IG +
Sbjct: 199 KQPQKKIGSR 208
Score = 49.2 bits (112), Expect = 2e-06
Identities = 22/67 (32%), Positives = 36/67 (53%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 480
KI+V + +E+ ++ FFS+FG I E + DK + KGFC ++S + L+
Sbjct: 246 KIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEE 305
Query: 481 PKRTIGG 501
P +T G
Sbjct: 306 PHKTFEG 312
Score = 40.7 bits (91), Expect = 9e-04
Identities = 19/59 (32%), Positives = 32/59 (54%)
Frame = +2
Query: 59 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 235
+K++V + E ++L F +GEIE + D TGR +GF V+K+ ES + +
Sbjct: 245 KKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRAL 303
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 51.2 bits (117), Expect = 6e-07
Identities = 23/72 (31%), Positives = 40/72 (55%)
Frame = +2
Query: 26 NSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 205
+S G + ++FVGGL + T+ ++R+ ++G + N+ D TG S+G+AF V+
Sbjct: 364 SSGSTGGLEGPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVY 423
Query: 206 KAPESIDKVMAA 241
+ P D AA
Sbjct: 424 QDPSVTDIACAA 435
Score = 34.7 bits (76), Expect = 0.057
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVN 465
+IFVGGL ++ +IR FG + + D+ KG+ F ++ V +
Sbjct: 376 RIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTD 430
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 50.4 bits (115), Expect = 1e-06
Identities = 22/49 (44%), Positives = 33/49 (67%)
Frame = +2
Query: 59 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 205
RKLF+ GL+ +TT + LR F +YG++E V D TG+S+G+ F+ F
Sbjct: 75 RKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTF 123
Score = 48.0 bits (109), Expect = 6e-06
Identities = 22/60 (36%), Positives = 34/60 (56%)
Frame = +2
Query: 59 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 238
RK++V + ++ L +HF AYG++E + D TG+SRGFA V+K E +A
Sbjct: 167 RKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALA 226
Score = 46.0 bits (104), Expect = 2e-05
Identities = 21/68 (30%), Positives = 38/68 (55%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 480
K+F+ GL+++ + + +R+ FS +G + E + DK + KG+ F+TF LK
Sbjct: 76 KLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKE 135
Query: 481 PKRTIGGK 504
P + I G+
Sbjct: 136 PSKKIDGR 143
Score = 40.7 bits (91), Expect = 9e-04
Identities = 18/68 (26%), Positives = 33/68 (48%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 480
KI+V + ++ D + N F +G + E + FDK + +GF +++ + L
Sbjct: 168 KIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALAD 227
Query: 481 PKRTIGGK 504
P + I GK
Sbjct: 228 PVKVIDGK 235
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 50.4 bits (115), Expect = 1e-06
Identities = 22/49 (44%), Positives = 33/49 (67%)
Frame = +2
Query: 59 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 205
RKLF+ GL+ +TT + LR F +YG++E V D TG+S+G+ F+ F
Sbjct: 75 RKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTF 123
Score = 48.0 bits (109), Expect = 6e-06
Identities = 22/60 (36%), Positives = 34/60 (56%)
Frame = +2
Query: 59 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 238
RK++V + ++ L +HF AYG++E + D TG+SRGFA V+K E +A
Sbjct: 167 RKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALA 226
Score = 46.0 bits (104), Expect = 2e-05
Identities = 21/68 (30%), Positives = 38/68 (55%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 480
K+F+ GL+++ + + +R+ FS +G + E + DK + KG+ F+TF LK
Sbjct: 76 KLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKE 135
Query: 481 PKRTIGGK 504
P + I G+
Sbjct: 136 PSKKIDGR 143
Score = 40.7 bits (91), Expect = 9e-04
Identities = 18/68 (26%), Positives = 33/68 (48%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 480
KI+V + ++ D + N F +G + E + FDK + +GF +++ + L
Sbjct: 168 KIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALAD 227
Query: 481 PKRTIGGK 504
P + I GK
Sbjct: 228 PVKVIDGK 235
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 50.4 bits (115), Expect = 1e-06
Identities = 20/60 (33%), Positives = 38/60 (63%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 480
+++VG LS + D + + FSE G ++E + +D+ + KGF F+T++S Q V + +K+
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264
Score = 46.8 bits (106), Expect = 1e-05
Identities = 19/77 (24%), Positives = 34/77 (44%)
Frame = +2
Query: 5 GGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSR 184
G + G +++VG LSW D L F G++ V D ++GRS+
Sbjct: 186 GSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSK 245
Query: 185 GFAFIVFKAPESIDKVM 235
GF F+ + + + + +
Sbjct: 246 GFGFVTYDSSQEVQNAI 262
Score = 46.0 bits (104), Expect = 2e-05
Identities = 25/64 (39%), Positives = 34/64 (53%)
Frame = +2
Query: 56 DRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 235
D KLFVG L + +L F + G +E + V D TGRSRGF F+ S+ +V
Sbjct: 90 DLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTM---SSVSEVE 146
Query: 236 AAGE 247
AA +
Sbjct: 147 AAAQ 150
Score = 37.9 bits (84), Expect = 0.006
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 450
K+FVG L + ++ F G + VE+ +DK + +GF F+T S
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSS 141
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 50.4 bits (115), Expect = 1e-06
Identities = 25/67 (37%), Positives = 34/67 (50%)
Frame = +2
Query: 35 EAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 214
EA + L+V L TD +LR+HF +G I S V DP +G SRG F+ F P
Sbjct: 319 EAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDP-SGVSRGSGFVAFSTP 377
Query: 215 ESIDKVM 235
E + +
Sbjct: 378 EEATRAI 384
Score = 41.5 bits (93), Expect = 5e-04
Identities = 20/60 (33%), Positives = 31/60 (51%)
Frame = +1
Query: 271 DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 450
DP K + ++V LS +SD+E+ F EFG + D + + KGF F+ FE+
Sbjct: 215 DPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRD-GEGKSKGFGFVNFEN 273
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +1
Query: 271 DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 450
DP K+ G IF+ L I + FS FG IL ++ D + Q KG+ F+ +++
Sbjct: 124 DPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPS-GQSKGYGFVQYDT 182
Query: 451 EQ 456
++
Sbjct: 183 DE 184
Score = 35.9 bits (79), Expect = 0.025
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = +2
Query: 65 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 220
+F+ L K L + F A+G I S V DP +G+S+G+ F+ + E+
Sbjct: 135 IFIKNLDKSIDHKALHETFSAFGPILSCKVAVDP-SGQSKGYGFVQYDTDEA 185
Score = 33.9 bits (74), Expect = 0.100
Identities = 16/57 (28%), Positives = 31/57 (54%)
Frame = +1
Query: 286 KARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 456
K++ ++V L ++DD++R F+ FGTI ++ D + R G F+ F + +
Sbjct: 323 KSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSR-GSGFVAFSTPE 378
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 50.0 bits (114), Expect = 1e-06
Identities = 21/62 (33%), Positives = 34/62 (54%)
Frame = +2
Query: 50 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 229
+ + KLFVG LSW T + L F G++ V D +TGRSRG+ F+ + + ++
Sbjct: 174 ETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMET 233
Query: 230 VM 235
+
Sbjct: 234 AL 235
Score = 31.9 bits (69), Expect = 0.40
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = +2
Query: 62 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 235
KL+ G L + L + E + V + +TG+SRGFAF+ E + ++
Sbjct: 86 KLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIII 143
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/58 (20%), Positives = 27/58 (46%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 474
K++ G L + + +F VE+ +++ Q +GF F+T + + N ++
Sbjct: 86 KLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIII 143
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 50.0 bits (114), Expect = 1e-06
Identities = 29/71 (40%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Frame = +2
Query: 8 GDSQDHNSAEAPGRDDDRK----LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTG 175
G N A A G+ +D +FVG LS E TD L D F A+ V D TG
Sbjct: 127 GQPMKVNWAYATGQREDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTG 186
Query: 176 RSRGFAFIVFK 208
RSRGF F+ F+
Sbjct: 187 RSRGFGFVSFR 197
Score = 42.7 bits (96), Expect = 2e-04
Identities = 18/54 (33%), Positives = 33/54 (61%)
Frame = +1
Query: 295 HGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 456
H IFVG LS E++D + + FS F + + + +D+ + +GF F++F ++Q
Sbjct: 147 HFNIFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQ 200
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/60 (36%), Positives = 37/60 (61%)
Frame = +2
Query: 62 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 241
KL++GGLS T + L+D F ++ + V T+ TGRSRG+ F+ F + +S + ++A
Sbjct: 32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISA 91
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/58 (27%), Positives = 31/58 (53%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 474
K+++GGLS + +++ FS F + E + +K + +G+ F+ F SE N +
Sbjct: 32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAI 89
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 49.6 bits (113), Expect = 2e-06
Identities = 25/72 (34%), Positives = 33/72 (45%)
Frame = +2
Query: 11 DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGF 190
D D E D KLFVG LS+ +L F + G +E + V D TGRSRGF
Sbjct: 83 DGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGF 142
Query: 191 AFIVFKAPESID 226
F+ ++
Sbjct: 143 GFVTMSTAAEVE 154
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/74 (29%), Positives = 35/74 (47%)
Frame = +2
Query: 14 SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFA 193
S S G +L+VG LSW D L + F G++ V D ++GRS+GF
Sbjct: 234 SYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFG 293
Query: 194 FIVFKAPESIDKVM 235
F+ + + + K +
Sbjct: 294 FVTLSSSQEVQKAI 307
Score = 46.0 bits (104), Expect = 2e-05
Identities = 19/60 (31%), Positives = 34/60 (56%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 480
+++VG LS + D + N F+E G ++E + +D+ + KGF F+T S Q V + +
Sbjct: 250 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 309
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 450
K+FVG LS + ++ F G + VE+ +DK + +GF F+T +
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMST 149
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 49.6 bits (113), Expect = 2e-06
Identities = 25/72 (34%), Positives = 33/72 (45%)
Frame = +2
Query: 11 DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGF 190
D D E D KLFVG LS+ +L F + G +E + V D TGRSRGF
Sbjct: 83 DGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGF 142
Query: 191 AFIVFKAPESID 226
F+ ++
Sbjct: 143 GFVTMSTAAEVE 154
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/74 (29%), Positives = 35/74 (47%)
Frame = +2
Query: 14 SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFA 193
S S G +L+VG LSW D L + F G++ V D ++GRS+GF
Sbjct: 242 SYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFG 301
Query: 194 FIVFKAPESIDKVM 235
F+ + + + K +
Sbjct: 302 FVTLSSSQEVQKAI 315
Score = 46.0 bits (104), Expect = 2e-05
Identities = 19/60 (31%), Positives = 34/60 (56%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 480
+++VG LS + D + N F+E G ++E + +D+ + KGF F+T S Q V + +
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 450
K+FVG LS + ++ F G + VE+ +DK + +GF F+T +
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMST 149
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 49.2 bits (112), Expect = 2e-06
Identities = 26/66 (39%), Positives = 35/66 (53%)
Frame = +1
Query: 283 AKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVV 462
AK ++FV LS+ +D +R FS FG I E + D + KGF FITF+SE
Sbjct: 2 AKRISAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDA 61
Query: 463 NDLLKT 480
LK+
Sbjct: 62 RKALKS 67
Score = 45.6 bits (103), Expect = 3e-05
Identities = 22/58 (37%), Positives = 32/58 (55%)
Frame = +2
Query: 62 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 235
+LFV LS TTD+ LR F +G+I+ + D T R +GF FI F + + K +
Sbjct: 8 QLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKAL 65
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 48.8 bits (111), Expect = 3e-06
Identities = 24/67 (35%), Positives = 34/67 (50%)
Frame = +2
Query: 50 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 229
D + K++V GL W T + L +F +GEI V D T RS+GF F+ F+ ES +
Sbjct: 6 DRETKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATR 65
Query: 230 VMAAGEH 250
H
Sbjct: 66 ACENPNH 72
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/71 (29%), Positives = 34/71 (47%)
Frame = +1
Query: 292 RHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDL 471
R KI+V GL + + ++F FG I+ ++ D + KGF F+TF +
Sbjct: 7 RETKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRA 66
Query: 472 LKTPKRTIGGK 504
+ P TI G+
Sbjct: 67 CENPNHTIDGR 77
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 48.8 bits (111), Expect = 3e-06
Identities = 20/52 (38%), Positives = 34/52 (65%)
Frame = +2
Query: 65 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 220
++VGG+ ++ T+ +L F YGEI +N+ D TG+S+GFAF+ ++ S
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRS 89
Score = 43.2 bits (97), Expect = 2e-04
Identities = 15/51 (29%), Positives = 34/51 (66%)
Frame = +1
Query: 304 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 456
++VGG+ ++++ ++ FS++G I++V + DK + KGF F+ +E ++
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQR 88
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 48.4 bits (110), Expect = 4e-06
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = +2
Query: 56 DRKLFVGGLSWETTDKELRDHFGA-YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 232
D +FVG L+ + TD L++ F Y + V TDP+TGRS+G+ F+ F ++
Sbjct: 115 DHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRA 174
Query: 233 MA 238
MA
Sbjct: 175 MA 176
Score = 33.5 bits (73), Expect = 0.13
Identities = 16/62 (25%), Positives = 32/62 (51%)
Frame = +2
Query: 50 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 229
++ R L++G L + + L F GE+ S+ V + TG+ G+ FI F + + ++
Sbjct: 21 EEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAER 80
Query: 230 VM 235
+
Sbjct: 81 TL 82
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 48.4 bits (110), Expect = 4e-06
Identities = 18/62 (29%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Frame = +1
Query: 295 HG-KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDL 471
HG ++F+GGL ++ ++++R+ E G I EV + D+ KG+ F+ F+++ V
Sbjct: 114 HGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKA 173
Query: 472 LK 477
++
Sbjct: 174 IE 175
Score = 44.8 bits (101), Expect = 5e-05
Identities = 19/58 (32%), Positives = 35/58 (60%)
Frame = +2
Query: 62 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 235
++F+GGL + +++LRD GEI + + D ++G S+G+AF+ FK + K +
Sbjct: 117 EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAI 174
Score = 35.9 bits (79), Expect = 0.025
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Frame = +2
Query: 62 KLFVGGLSWETTDKELRDHFGAYGE-IESINVKTDP-NTGRSRGFAFIVF 205
+LF+G + T+ E R G +E+I + DP NT R+RGFAF+++
Sbjct: 197 RLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLY 246
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILE-VEMPFDKTKNQR-KGFCFITF 444
++F+G + ++DE R + G +E +E+ D T R +GF F+ +
Sbjct: 197 RLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLY 246
Score = 29.9 bits (64), Expect = 1.6
Identities = 20/74 (27%), Positives = 36/74 (48%)
Frame = +2
Query: 14 SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFA 193
S +H++A A + L+V + T+ ++L++ F +GE+ I T P G R F
Sbjct: 281 SPEHSAAAA----QVKALYVKNIPENTSTEQLKELFQRHGEVTKI--VTPPGKGGKRDFG 334
Query: 194 FIVFKAPESIDKVM 235
F+ + S K +
Sbjct: 335 FVHYAERSSALKAV 348
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 48.4 bits (110), Expect = 4e-06
Identities = 24/60 (40%), Positives = 36/60 (60%)
Frame = +2
Query: 62 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 241
K+FVGGLS T + L++ FG++G+I V D +G SRGF F+ + + E + M A
Sbjct: 37 KIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQA 96
Score = 46.8 bits (106), Expect = 1e-05
Identities = 20/59 (33%), Positives = 35/59 (59%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 477
KIFVGGLS + ++ F FG I++ + D+ +GF F+T++S +V N+ ++
Sbjct: 37 KIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQ 95
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 47.6 bits (108), Expect = 8e-06
Identities = 25/66 (37%), Positives = 34/66 (51%)
Frame = +2
Query: 41 PGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 220
P + LFV GLS TT + LR F +GE+ V TD +G S+GF F+ + E
Sbjct: 50 PQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLED 109
Query: 221 IDKVMA 238
K +A
Sbjct: 110 SAKGIA 115
Score = 37.9 bits (84), Expect = 0.006
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +1
Query: 304 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 444
+FV GLS + + +R F++FG + + ++ D+ KGF F+ +
Sbjct: 58 LFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRY 104
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 47.2 bits (107), Expect = 1e-05
Identities = 23/74 (31%), Positives = 38/74 (51%)
Frame = +2
Query: 8 GDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRG 187
G S+ + + + L+V GLS TDK+L HF G++ S + +P T SRG
Sbjct: 55 GRSRSRSRGRSEVENPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRG 114
Query: 188 FAFIVFKAPESIDK 229
FAF+ + + ++
Sbjct: 115 FAFVTMSSLKDAER 128
Score = 31.5 bits (68), Expect = 0.53
Identities = 12/49 (24%), Positives = 26/49 (53%)
Frame = +1
Query: 304 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 450
++V GLS+ ++D ++ F++ G + + + +GF F+T S
Sbjct: 74 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSS 122
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 47.2 bits (107), Expect = 1e-05
Identities = 20/59 (33%), Positives = 34/59 (57%)
Frame = +2
Query: 62 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 238
KL+VGG+ +++T+ E+R +F + G I ++ K P G G AFI F + + +A
Sbjct: 162 KLYVGGIPYQSTEDEIRSYFRSCGVIIKVDCKMRPEDGAFSGIAFITFDTEDGAKRALA 220
Score = 44.8 bits (101), Expect = 5e-05
Identities = 20/68 (29%), Positives = 36/68 (52%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 480
K++VGG+ + ++DEIR++F G I++V+ G FITF++E L
Sbjct: 162 KLYVGGIPYQSTEDEIRSYFRSCGVIIKVDCKMRPEDGAFSGIAFITFDTEDGAKRALAF 221
Query: 481 PKRTIGGK 504
+ +G +
Sbjct: 222 DRAAMGDR 229
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/58 (29%), Positives = 34/58 (58%)
Frame = +2
Query: 50 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI 223
D ++++G L+W+TT++++R F I S+ + + TG +G+A + FK S+
Sbjct: 259 DGYNRVYIGNLAWDTTERDIRKLFSDC-VINSVRLGKNKETGEFKGYAHVDFKDSVSV 315
Score = 33.1 bits (72), Expect = 0.17
Identities = 17/70 (24%), Positives = 37/70 (52%)
Frame = +1
Query: 295 HGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 474
+ ++++G L+ + ++ +IR FS+ I V + +K + KG+ + F+ V L
Sbjct: 261 YNRVYIGNLAWDTTERDIRKLFSDC-VINSVRLGKNKETGEFKGYAHVDFKDSVSVAIAL 319
Query: 475 KTPKRTIGGK 504
K ++ I G+
Sbjct: 320 KLDQQVICGR 329
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 46.8 bits (106), Expect = 1e-05
Identities = 20/58 (34%), Positives = 34/58 (58%)
Frame = +2
Query: 62 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 235
KLF+GGLS+ TT++ L + F G++ + D + RS+GF F+ F + + K +
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKAL 92
Score = 44.0 bits (99), Expect = 9e-05
Identities = 18/50 (36%), Positives = 32/50 (64%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 450
K+F+GGLS ++ + FS+ G ++E ++ D+ ++ KGF F+TF S
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFAS 84
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 46.8 bits (106), Expect = 1e-05
Identities = 21/68 (30%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Frame = +1
Query: 304 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES-EQVVNDLLKT 480
+FV G+S +++ + FS++G +L+V++ DK + + KGF ++TF S E+ LL+
Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLEL 82
Query: 481 PKRTIGGK 504
+ + G+
Sbjct: 83 NAQLVDGR 90
Score = 45.6 bits (103), Expect = 3e-05
Identities = 19/57 (33%), Positives = 34/57 (59%)
Frame = +2
Query: 65 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 235
LFV G+S+ +T++ L F YG++ ++V D R +GFA++ F + E +K +
Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKAL 79
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 46.8 bits (106), Expect = 1e-05
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +2
Query: 29 SAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESI-NVKTDPNTGRSRGFAFIVF 205
S + D LF+G L + +K L D F A+G I S + DP+TG SRGF FI +
Sbjct: 102 SQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISY 161
Query: 206 KAPESID 226
+ E+ D
Sbjct: 162 DSFEASD 168
Score = 33.1 bits (72), Expect = 0.17
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +1
Query: 259 NKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTIL-EVEMPFDKTKNQRKGFCF 435
NK KK+ +F+G L ++ + + + FS FG I ++ D +GF F
Sbjct: 99 NKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGF 158
Query: 436 ITFES 450
I+++S
Sbjct: 159 ISYDS 163
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 46.8 bits (106), Expect = 1e-05
Identities = 26/68 (38%), Positives = 36/68 (52%)
Frame = +2
Query: 17 QDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAF 196
QD +E+ ++V L E TD EL+ FG YG+I S V D +G SR F F
Sbjct: 211 QDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKD-QSGNSRSFGF 269
Query: 197 IVFKAPES 220
+ F +PE+
Sbjct: 270 VNFVSPEA 277
Score = 41.9 bits (94), Expect = 4e-04
Identities = 20/62 (32%), Positives = 32/62 (51%)
Frame = +1
Query: 271 DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 450
DP + G +F+ L + I + + FS FGTIL ++ D + KG+ F+ FE
Sbjct: 123 DPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMD-VVGRSKGYGFVQFEK 181
Query: 451 EQ 456
E+
Sbjct: 182 EE 183
Score = 37.1 bits (82), Expect = 0.011
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +2
Query: 65 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 217
L++ L D++L++ F YG + S V + + G SRGF F+ + PE
Sbjct: 330 LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMN-SQGLSRGFGFVAYSNPE 379
Score = 35.1 bits (77), Expect = 0.043
Identities = 21/69 (30%), Positives = 32/69 (46%)
Frame = +2
Query: 29 SAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 208
+AEA + L+VG L + L D F + ++ V D T RS G+A++ F
Sbjct: 35 AAEALQTHPNSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFA 93
Query: 209 APESIDKVM 235
PE + M
Sbjct: 94 NPEDASRAM 102
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 46.4 bits (105), Expect = 2e-05
Identities = 23/73 (31%), Positives = 37/73 (50%)
Frame = +2
Query: 20 DHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFI 199
+ N EA + L+V L +D++L++ F +G + S V DPN G S+G F+
Sbjct: 119 EQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPN-GTSKGSGFV 177
Query: 200 VFKAPESIDKVMA 238
F PE + M+
Sbjct: 178 AFATPEEATEAMS 190
Score = 41.5 bits (93), Expect = 5e-04
Identities = 20/48 (41%), Positives = 31/48 (64%)
Frame = +2
Query: 65 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 208
++V L+ TTD +L++ FG YG+I S V D G+S+GF F+ F+
Sbjct: 31 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKD-GEGKSKGFGFVNFE 77
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/60 (30%), Positives = 32/60 (53%)
Frame = +1
Query: 271 DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 450
D K + ++V L+ +DD+++N F E+G I + D + + KGF F+ FE+
Sbjct: 20 DSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKD-GEGKSKGFGFVNFEN 78
Score = 33.1 bits (72), Expect = 0.17
Identities = 16/63 (25%), Positives = 31/63 (49%)
Frame = +1
Query: 286 KARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVN 465
K + ++V L ISD++++ FS FGT+ ++ D KG F+ F + +
Sbjct: 128 KFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRD-PNGTSKGSGFVAFATPEEAT 186
Query: 466 DLL 474
+ +
Sbjct: 187 EAM 189
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 46.4 bits (105), Expect = 2e-05
Identities = 18/52 (34%), Positives = 33/52 (63%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 456
K+FVG + +++EIR +F + G +LEV + DK Q++G CF+ + + +
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSK 172
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Frame = +2
Query: 20 DHNS---AEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGF 190
DH S + R KLFVG + T++E+R +F +G + + + D TG+ +G
Sbjct: 104 DHGSFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGC 163
Query: 191 AFIVFKAPESIDKVMAA 241
F+ + + D+ + A
Sbjct: 164 CFVKYATSKDADRAIRA 180
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/53 (33%), Positives = 32/53 (60%)
Frame = +2
Query: 62 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 220
KLFVG L+ + T+KE+ + F +G +E + + D +SRG F+ + + E+
Sbjct: 212 KLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRD-EYRQSRGCGFVKYSSKET 263
Score = 35.1 bits (77), Expect = 0.043
Identities = 15/52 (28%), Positives = 32/52 (61%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 456
K+FVG L+ + ++ E+ F +FG + +V + D+ + Q +G F+ + S++
Sbjct: 212 KLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYR-QSRGCGFVKYSSKE 262
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 46.4 bits (105), Expect = 2e-05
Identities = 18/52 (34%), Positives = 33/52 (63%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 456
K+FVG + +++EIR +F + G +LEV + DK Q++G CF+ + + +
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSK 172
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Frame = +2
Query: 20 DHNS---AEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGF 190
DH S + R KLFVG + T++E+R +F +G + + + D TG+ +G
Sbjct: 104 DHGSFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGC 163
Query: 191 AFIVFKAPESIDKVMAA 241
F+ + + D+ + A
Sbjct: 164 CFVKYATSKDADRAIRA 180
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/53 (33%), Positives = 32/53 (60%)
Frame = +2
Query: 62 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 220
KLFVG L+ + T+KE+ + F +G +E + + D +SRG F+ + + E+
Sbjct: 212 KLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRD-EYRQSRGCGFVKYSSKET 263
Score = 35.1 bits (77), Expect = 0.043
Identities = 15/52 (28%), Positives = 32/52 (61%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 456
K+FVG L+ + ++ E+ F +FG + +V + D+ + Q +G F+ + S++
Sbjct: 212 KLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYR-QSRGCGFVKYSSKE 262
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 46.4 bits (105), Expect = 2e-05
Identities = 28/74 (37%), Positives = 37/74 (50%)
Frame = +2
Query: 14 SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFA 193
++D +A A G D ++V L TD L F YG + S+ V D GRSRGF
Sbjct: 188 NKDERAAMA-GNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRD-GMGRSRGFG 245
Query: 194 FIVFKAPESIDKVM 235
F+ F PE+ K M
Sbjct: 246 FVNFCNPENAKKAM 259
Score = 41.1 bits (92), Expect = 7e-04
Identities = 21/47 (44%), Positives = 27/47 (57%)
Frame = +2
Query: 65 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 205
L+V LS + LR+ FG YG+I S V N GRS+GF F+ F
Sbjct: 306 LYVKNLSESMNETRLREIFGCYGQIVSAKVMCHEN-GRSKGFGFVCF 351
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/62 (33%), Positives = 34/62 (54%)
Frame = +2
Query: 65 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 244
L+VG LS + T+K+L D F + S+++ + TG+S +A+I F +P S M
Sbjct: 23 LYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTRL 82
Query: 245 EH 250
H
Sbjct: 83 NH 84
Score = 31.1 bits (67), Expect = 0.70
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +1
Query: 304 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 444
++V L ++DD + FS++GT+ V + D R GF F+ F
Sbjct: 204 VYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSR-GFGFVNF 249
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 46.4 bits (105), Expect = 2e-05
Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 4/55 (7%)
Frame = +2
Query: 53 DDRKLFVGG----LSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 205
D++K+FV G LS + LR+HF + GEI++++V D +TG S+G A++ F
Sbjct: 399 DEKKIFVKGFDASLSEDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEF 453
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRN----FFSEFGTILEVEMPFDKTKNQRKGFCFITF 444
KIFV G + +S+D+I+N FS G I V +P D+ KG ++ F
Sbjct: 402 KIFVKGFDASLSEDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEF 453
Score = 37.5 bits (83), Expect = 0.008
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = +1
Query: 304 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP 483
+F LS I ++ NFF E G +++V ++ +GF + F S + L+
Sbjct: 299 LFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKALEFH 358
Query: 484 KRTIGGKE 507
R + G+E
Sbjct: 359 GRPLLGRE 366
Score = 35.1 bits (77), Expect = 0.043
Identities = 16/65 (24%), Positives = 28/65 (43%)
Frame = +2
Query: 41 PGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 220
P + LF LS+ ++ + F GE+ + T+ + G RGF + F + E
Sbjct: 291 PAAGGSKTLFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEE 350
Query: 221 IDKVM 235
K +
Sbjct: 351 AQKAL 355
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 46.0 bits (104), Expect = 2e-05
Identities = 21/55 (38%), Positives = 32/55 (58%)
Frame = +2
Query: 65 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 229
L+V GLS TDK+L HF G++ S + +P T SRGFAF+ + + ++
Sbjct: 73 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAER 127
Score = 31.5 bits (68), Expect = 0.53
Identities = 12/49 (24%), Positives = 26/49 (53%)
Frame = +1
Query: 304 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 450
++V GLS+ ++D ++ F++ G + + + +GF F+T S
Sbjct: 73 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSS 121
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 46.0 bits (104), Expect = 2e-05
Identities = 21/50 (42%), Positives = 29/50 (58%)
Frame = +2
Query: 62 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKA 211
+++VG LS TTD LR+ F YG + V D T RSRGF F+ + +
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSS 53
Score = 41.5 bits (93), Expect = 5e-04
Identities = 16/50 (32%), Positives = 32/50 (64%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 450
+++VG LS +DD +R FS +G +++ + D+ ++ +GF F+T+ S
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSS 53
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 46.0 bits (104), Expect = 2e-05
Identities = 21/44 (47%), Positives = 26/44 (59%)
Frame = +2
Query: 68 FVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFI 199
F L + KELR HF GE+ ++V TD TG SRGFA+I
Sbjct: 486 FSSSLGEDEIKKELRSHFSKCGEVTRVHVPTDRETGASRGFAYI 529
Score = 37.9 bits (84), Expect = 0.006
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = +1
Query: 304 IFVGGLSSEISDDEI----RNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDL 471
I+V G SS + +DEI R+ FS+ G + V +P D+ +GF +I S ++
Sbjct: 481 IYVRGFSSSLGEDEIKKELRSHFSKCGEVTRVHVPTDRETGASRGFAYIDLTSG--FDEA 538
Query: 472 LKTPKRTIGG 501
L+ IGG
Sbjct: 539 LQLSGSEIGG 548
Score = 36.3 bits (80), Expect = 0.019
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +1
Query: 304 IFVGGLSSEISDDEIRNFFSEFGTILEVEM-PFDKTKNQRKGFCFITFESEQVVNDLLKT 480
+F G LS +I+ +I NFF E G +++V + FD KG+ I F S + L+
Sbjct: 386 LFAGNLSYQIARSDIENFFKEAGEVVDVRLSSFD--DGSFKGYGHIEFASPEEAQKALEM 443
Query: 481 PKRTIGGKE 507
+ + G++
Sbjct: 444 NGKLLLGRD 452
Score = 33.5 bits (73), Expect = 0.13
Identities = 15/59 (25%), Positives = 30/59 (50%)
Frame = +2
Query: 59 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 235
+ LF G LS++ ++ + F GE+ + + + + G +G+ I F +PE K +
Sbjct: 384 KTLFAGNLSYQIARSDIENFFKEAGEVVDVRLSSF-DDGSFKGYGHIEFASPEEAQKAL 441
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 46.0 bits (104), Expect = 2e-05
Identities = 26/65 (40%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Frame = +2
Query: 26 NSAEAPGRDDDRK----LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFA 193
N A A G+ +D +FVG LS E TD L F + V D TGRSRGF
Sbjct: 129 NWAYATGQREDTSSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFG 188
Query: 194 FIVFK 208
F+ F+
Sbjct: 189 FVSFR 193
Score = 42.3 bits (95), Expect = 3e-04
Identities = 18/54 (33%), Positives = 32/54 (59%)
Frame = +1
Query: 295 HGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 456
H IFVG LS E++D + FS F + + + +D+ + +GF F++F ++Q
Sbjct: 143 HFNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQ 196
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 46.0 bits (104), Expect = 2e-05
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Frame = +2
Query: 35 EAPGRDD-DRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK- 208
E DD +R LF+ L ++ T +E++ F +GE+ES+++ T R G AF+ FK
Sbjct: 552 ETQDNDDFERTLFIRNLPFDVTKEEVKQRFTVFGEVESLSLVLHKVTKRPEGTAFVKFKT 611
Query: 209 APESIDKVMAA 241
A S+ + AA
Sbjct: 612 ADASVAAISAA 622
Score = 38.3 bits (85), Expect = 0.005
Identities = 20/82 (24%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Frame = +1
Query: 262 KKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFIT 441
+K +K+ + V GL I++ ++ FSE G + + +K ++ +GF F+
Sbjct: 8 RKDGEEKSPHAAATVCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVK 67
Query: 442 FESEQVVNDLLKTPK-RTIGGK 504
F ++ VN ++ T+GG+
Sbjct: 68 FALQEDVNRAIELKNGSTVGGR 89
Score = 35.9 bits (79), Expect = 0.025
Identities = 17/77 (22%), Positives = 34/77 (44%)
Frame = +2
Query: 5 GGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSR 184
G + ++ E + V GL + T+ +L + F G + + T+ + R
Sbjct: 2 GKNKRERKDGEEKSPHAAATVCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHR 61
Query: 185 GFAFIVFKAPESIDKVM 235
GFAF+ F E +++ +
Sbjct: 62 GFAFVKFALQEDVNRAI 78
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +2
Query: 62 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 205
KL + L ++ +++ F A G + + + + TG +GFAF+ F
Sbjct: 332 KLIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKF 379
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 45.6 bits (103), Expect = 3e-05
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Frame = +2
Query: 8 GDSQDHN---SAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGR 178
G SQD + SA D R ++VG + + T +E++ HF + G + + + TD G+
Sbjct: 83 GASQDPSGGVSAAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQ 141
Query: 179 SRGFAFIVFKAPESIDKVMAAGE 247
+GFA++ F E++ + E
Sbjct: 142 PKGFAYVEFVEVEAVQNSLILNE 164
Score = 36.3 bits (80), Expect = 0.019
Identities = 21/86 (24%), Positives = 40/86 (46%)
Frame = +1
Query: 277 KKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 456
+K + I+VG + + +E++ F GT+ V + DK Q KGF ++ F +
Sbjct: 96 EKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEVE 154
Query: 457 VVNDLLKTPKRTIGGKEAM*SVQHQN 534
V + L + + G++ S + N
Sbjct: 155 AVQNSLILNESELHGRQIKVSAKRTN 180
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 45.6 bits (103), Expect = 3e-05
Identities = 18/60 (30%), Positives = 33/60 (55%)
Frame = +2
Query: 62 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 241
+++VG L W+ + L F +G++ V D TGRSRGF F+ + +++ ++A
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304
Score = 41.1 bits (92), Expect = 7e-04
Identities = 14/58 (24%), Positives = 32/58 (55%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 474
+++VG L ++ + + FSE G ++E + +D+ + +GF F+T +N+ +
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAI 302
Score = 40.7 bits (91), Expect = 9e-04
Identities = 24/72 (33%), Positives = 36/72 (50%)
Frame = +2
Query: 32 AEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKA 211
AE P ++ KLFVG L+++ + L F G +E V + T +SRGF F+
Sbjct: 141 AEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTM-- 198
Query: 212 PESIDKVMAAGE 247
S+D+ A E
Sbjct: 199 -SSVDEAETAVE 209
Score = 38.7 bits (86), Expect = 0.004
Identities = 15/54 (27%), Positives = 31/54 (57%)
Frame = +1
Query: 289 ARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 450
+ K+FVG L+ +++ + F + GT+ E+ +++ +Q +GF F+T S
Sbjct: 147 SEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSS 200
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 45.6 bits (103), Expect = 3e-05
Identities = 25/59 (42%), Positives = 33/59 (55%)
Frame = +2
Query: 65 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 241
++V LS TTD EL+ FG YG I S V D G+SR F F+ F+ PE + + A
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRD-GDGKSRCFGFVNFENPEDAARAVEA 284
Score = 45.2 bits (102), Expect = 4e-05
Identities = 23/72 (31%), Positives = 37/72 (51%)
Frame = +2
Query: 20 DHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFI 199
+ S++ + D L+V L TD++LR+ F +G I S V DP +G S+G F+
Sbjct: 315 EQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDP-SGTSKGSGFV 373
Query: 200 VFKAPESIDKVM 235
F A +V+
Sbjct: 374 AFSAASEASRVL 385
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/78 (28%), Positives = 37/78 (47%)
Frame = +2
Query: 2 GGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRS 181
GGGD H + + L+VG L + TD +L D+F ++ S+ V D T S
Sbjct: 35 GGGDGVTHGALCS--------LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTS 86
Query: 182 RGFAFIVFKAPESIDKVM 235
G+ ++ + + +K M
Sbjct: 87 LGYGYVNYSNTDDAEKAM 104
Score = 36.7 bits (81), Expect = 0.014
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +1
Query: 304 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP 483
++V L ++D+++R F+EFGTI ++ D + KG F+ F + + +L
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPS-GTSKGSGFVAFSAASEASRVLNEM 388
Query: 484 K-RTIGGK 504
+ +GGK
Sbjct: 389 NGKMVGGK 396
Score = 32.7 bits (71), Expect = 0.23
Identities = 16/69 (23%), Positives = 33/69 (47%)
Frame = +1
Query: 271 DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 450
D ++ G +FV L + + + FS GTI+ ++ D Q +G+ F+ F++
Sbjct: 125 DSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDH-MGQSRGYGFVQFDT 183
Query: 451 EQVVNDLLK 477
E + ++
Sbjct: 184 EDSAKNAIE 192
Score = 29.9 bits (64), Expect = 1.6
Identities = 10/49 (20%), Positives = 27/49 (55%)
Frame = +1
Query: 304 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 450
++VG L ++D ++ ++F+E ++ V + D N G+ ++ + +
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSN 96
>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}, RNA Binding Protein 47
[Nicotiana plumbaginifolia] GI:9663769; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 481
Score = 45.6 bits (103), Expect = 3e-05
Identities = 23/74 (31%), Positives = 42/74 (56%)
Frame = +2
Query: 8 GDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRG 187
G + + + E+P + + L+VGGL+ ++++RD F A+GEIESI + D +
Sbjct: 211 GKAGEMGTLESPDDESIKTLYVGGLNSRILEQDIRDQFYAHGEIESIRILAD------KA 264
Query: 188 FAFIVFKAPESIDK 229
AF+ + + E +K
Sbjct: 265 CAFVTYTSREGAEK 278
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 45.2 bits (102), Expect = 4e-05
Identities = 19/65 (29%), Positives = 36/65 (55%)
Frame = +2
Query: 53 DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 232
D R +FVG + + T +E++ HF G + + + TD G+ +GFA++ F E++ +
Sbjct: 90 DARSVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTD-KFGQPKGFAYVEFVEVEAVQEA 148
Query: 233 MAAGE 247
+ E
Sbjct: 149 LQLNE 153
Score = 37.1 bits (82), Expect = 0.011
Identities = 18/68 (26%), Positives = 35/68 (51%)
Frame = +1
Query: 304 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP 483
+FVG + + +E++ F GT+ V + DK Q KGF ++ F + V + L+
Sbjct: 94 VFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKF-GQPKGFAYVEFVEVEAVQEALQLN 152
Query: 484 KRTIGGKE 507
+ + G++
Sbjct: 153 ESELHGRQ 160
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 45.2 bits (102), Expect = 4e-05
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = +2
Query: 62 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 241
+++VG L W+ L F +G++ V +D TGRSRGF F+ ++ +AA
Sbjct: 208 RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAA 267
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/65 (30%), Positives = 32/65 (49%)
Frame = +2
Query: 41 PGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 220
P ++ KLFVG L ++ + L F G +E V + +T +SRGF F+ E
Sbjct: 107 PEPPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEE 166
Query: 221 IDKVM 235
+K +
Sbjct: 167 AEKAV 171
Score = 38.7 bits (86), Expect = 0.004
Identities = 15/55 (27%), Positives = 29/55 (52%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVN 465
+I+VG L ++ + FSE G +++ + D+ + +GF F+ +E VN
Sbjct: 208 RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVN 262
Score = 35.1 bits (77), Expect = 0.043
Identities = 14/50 (28%), Positives = 28/50 (56%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 450
K+FVG L ++ + F + GT+ E+ +++ +Q +GF F+T +
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMST 163
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 45.2 bits (102), Expect = 4e-05
Identities = 24/70 (34%), Positives = 40/70 (57%)
Frame = +1
Query: 304 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP 483
IFVGGL S ++D++++ FSEFG I+ V++P KG F+ F + + L+
Sbjct: 308 IFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVG------KGCGFVQFVNRPNAEEALEKL 361
Query: 484 KRTIGGKEAM 513
T+ GK+ +
Sbjct: 362 NGTVIGKQTV 371
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +2
Query: 56 DRKLFVGGLSWETTDKELRDHFGA-YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 232
D +FVG L+ + +D L + F Y +++ V D NTGRS+G+ F+ F K
Sbjct: 198 DLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKA 257
Query: 233 M 235
M
Sbjct: 258 M 258
Score = 35.9 bits (79), Expect = 0.025
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Frame = +2
Query: 65 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK--APESIDKV 232
+FVGGL TD++L+ F +GEI S+ + G+ GF V + A E+++K+
Sbjct: 308 IFVGGLDSSVTDEDLKQPFSEFGEIVSVKIP----VGKGCGFVQFVNRPNAEEALEKL 361
Score = 32.7 bits (71), Expect = 0.23
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +1
Query: 304 IFVGGLSSEISDDEIRNFFSE-FGTILEVEMPFDKTKNQRKGFCFITFESE 453
IFVG L+ ++SD + FSE + ++ ++ D + KG+ F+ F E
Sbjct: 201 IFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDE 251
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 44.8 bits (101), Expect = 5e-05
Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +2
Query: 56 DRKLFVGGLSWETTDKELRDHF-GAYGEIESINVKTDPNTGRSRGFAFIVF 205
D +FVG L+ E TD L D F YG ++ V D TGRS+G+ F+ F
Sbjct: 153 DHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRF 203
Score = 42.3 bits (95), Expect = 3e-04
Identities = 15/31 (48%), Positives = 25/31 (80%)
Frame = +1
Query: 304 IFVGGLSSEISDDEIRNFFSEFGTILEVEMP 396
IFVGGL + ++DDE+++ F +FG +L V++P
Sbjct: 262 IFVGGLDANVTDDELKSIFGQFGELLHVKIP 292
Score = 37.5 bits (83), Expect = 0.008
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +2
Query: 17 QDHNSAEAPGRD-DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFA 193
Q+ A A D ++ +FVGGL TD EL+ FG +GE+ ++VK P G+ GF
Sbjct: 245 QNTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGEL--LHVKIPP--GKRCGFV 300
Query: 194 FIVFKA 211
KA
Sbjct: 301 QYANKA 306
Score = 35.5 bits (78), Expect = 0.033
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +1
Query: 304 IFVGGLSSEISDDEIRNFFSE-FGTILEVEMPFDKTKNQRKGFCFITFESE 453
IFVG L+ E++D + + F +G++ ++ D+T + KG+ F+ F E
Sbjct: 156 IFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADE 206
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 44.8 bits (101), Expect = 5e-05
Identities = 17/67 (25%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Frame = +1
Query: 295 HG-KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDL 471
HG ++++GG+ ++ ++ +++ F G + EV + +K KG+ F+TF S+ + +
Sbjct: 90 HGSEVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEA 149
Query: 472 LKTPKRT 492
+ T T
Sbjct: 150 IDTLNNT 156
Score = 41.1 bits (92), Expect = 7e-04
Identities = 12/52 (23%), Positives = 34/52 (65%)
Frame = +2
Query: 62 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 217
++++GG+ + T+ +L+ G+ GE+ + + + ++G +G+AF+ F++ +
Sbjct: 93 EVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKD 144
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +2
Query: 62 KLFVGGLSWETTDKELRDHFGAYGE-IESINVKTDP-NTGRSRGFAFIVF 205
+LF+G + + +++ G ++ + + +P N GR+RGFAFI +
Sbjct: 173 RLFLGNVPRNWMESDIKKAANRIGPGVQIVELPKEPQNMGRNRGFAFIEY 222
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 44.8 bits (101), Expect = 5e-05
Identities = 20/61 (32%), Positives = 39/61 (63%)
Frame = +2
Query: 23 HNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIV 202
+N A G D + LFV L++E+++ +++ F +YG I+ +++ TD T + +G+AFI
Sbjct: 127 NNDPNATG-DPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIE 185
Query: 203 F 205
+
Sbjct: 186 Y 186
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = +1
Query: 271 DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 444
DP + +FV L+ E S+ +I+ F +G I V + D+ N+ KG+ FI +
Sbjct: 129 DPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEY 186
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 44.8 bits (101), Expect = 5e-05
Identities = 22/73 (30%), Positives = 43/73 (58%)
Frame = +1
Query: 262 KKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFIT 441
+K + +K A+ I+V ++ ++++E+R FS+ GTI ++ D+ K + KGF F+
Sbjct: 292 EKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDE-KGKSKGFGFVC 350
Query: 442 FESEQVVNDLLKT 480
F + + D +KT
Sbjct: 351 FSTPEEAIDAVKT 363
Score = 43.6 bits (98), Expect = 1e-04
Identities = 21/84 (25%), Positives = 46/84 (54%)
Frame = +1
Query: 262 KKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFIT 441
KK D K + ++ +++ L +++S+D +R F+EFG I+ + + D+ + R G+ F+
Sbjct: 189 KKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCR-GYAFVN 247
Query: 442 FESEQVVNDLLKTPKRTIGGKEAM 513
F++ + +T T G + +
Sbjct: 248 FDNPEDARRAAETVNGTKFGSKCL 271
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +2
Query: 65 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP-ESIDKV 232
++V ++ T++ELR HF G I S + D G+S+GF F+ F P E+ID V
Sbjct: 306 IYVKNVNVAVTEEELRKHFSQCGTITSTKLMCD-EKGKSKGFGFVCFSTPEEAIDAV 361
Score = 34.7 bits (76), Expect = 0.057
Identities = 16/66 (24%), Positives = 34/66 (51%)
Frame = +1
Query: 298 GKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 477
G +FV L +++ +++ F +FG I+ ++ + +G+ F+ FE E + ++
Sbjct: 112 GNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVA-TLEDGKSRGYGFVQFEQEDAAHAAIQ 170
Query: 478 TPKRTI 495
T TI
Sbjct: 171 TLNSTI 176
Score = 33.5 bits (73), Expect = 0.13
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Frame = +2
Query: 29 SAEAPG--RDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIV 202
S AP R+ +FV L T+ L+D F +G I S V T + G+SRG+ F+
Sbjct: 100 SVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLED-GKSRGYGFVQ 158
Query: 203 FKAPES 220
F+ ++
Sbjct: 159 FEQEDA 164
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +2
Query: 65 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 205
L+VG L T+ L D F + + S+ + D ++GRS + + F
Sbjct: 26 LYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANF 72
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 44.8 bits (101), Expect = 5e-05
Identities = 30/75 (40%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Frame = +2
Query: 8 GDSQDHNSAEAPGRDDDRK----LFVGGLSWETTDKELRDHFGAYGEIESI----NVKTD 163
G N A A G+ +D +FVG LS E TD L D F A+ S V D
Sbjct: 127 GQPMKVNWAYATGQREDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWD 186
Query: 164 PNTGRSRGFAFIVFK 208
TGRSRGF F+ F+
Sbjct: 187 QKTGRSRGFGFVSFR 201
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 44.4 bits (100), Expect = 7e-05
Identities = 20/66 (30%), Positives = 38/66 (57%)
Frame = +2
Query: 44 GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI 223
G + ++FVGGL + T+ ++R+ ++G ++ ++ D TG S+G+AF V++
Sbjct: 354 GLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVT 413
Query: 224 DKVMAA 241
D AA
Sbjct: 414 DIACAA 419
Score = 35.1 bits (77), Expect = 0.043
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVN 465
+IFVGGL ++ ++R FG + ++ D+ KG+ F ++ V +
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTD 414
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 44.4 bits (100), Expect = 7e-05
Identities = 20/66 (30%), Positives = 38/66 (57%)
Frame = +2
Query: 44 GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI 223
G + ++FVGGL + T+ ++R+ ++G ++ ++ D TG S+G+AF V++
Sbjct: 354 GLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVT 413
Query: 224 DKVMAA 241
D AA
Sbjct: 414 DIACAA 419
Score = 35.1 bits (77), Expect = 0.043
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVN 465
+IFVGGL ++ ++R FG + ++ D+ KG+ F ++ V +
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTD 414
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 44.4 bits (100), Expect = 7e-05
Identities = 20/66 (30%), Positives = 38/66 (57%)
Frame = +2
Query: 44 GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI 223
G + ++FVGGL + T+ ++R+ ++G ++ ++ D TG S+G+AF V++
Sbjct: 354 GLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVT 413
Query: 224 DKVMAA 241
D AA
Sbjct: 414 DIACAA 419
Score = 35.1 bits (77), Expect = 0.043
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVN 465
+IFVGGL ++ ++R FG + ++ D+ KG+ F ++ V +
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTD 414
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 44.4 bits (100), Expect = 7e-05
Identities = 20/64 (31%), Positives = 33/64 (51%)
Frame = +2
Query: 50 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 229
D K++VG L+ T + L + F G++ S V P T +S GF F+ F + E ++
Sbjct: 174 DSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEA 233
Query: 230 VMAA 241
+ A
Sbjct: 234 AIVA 237
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/75 (25%), Positives = 40/75 (53%)
Frame = +2
Query: 11 DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGF 190
++++ +A P + R++++G + T+++L +G +E + V D +GRSR F
Sbjct: 60 ETEEKPAALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRF 119
Query: 191 AFIVFKAPESIDKVM 235
F K+ E + V+
Sbjct: 120 GFATMKSVEDANAVV 134
Score = 40.7 bits (91), Expect = 9e-04
Identities = 20/88 (22%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Frame = +1
Query: 247 THHNNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKG 426
T +DP AR ++++G + ++++++ E G + +V++ +DK + +
Sbjct: 61 TEEKPAALDPSSEAAR--RVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRR 118
Query: 427 FCFITFESEQVVNDLL-KTPKRTIGGKE 507
F F T +S + N ++ K T+ G+E
Sbjct: 119 FGFATMKSVEDANAVVEKLNGNTVEGRE 146
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/54 (31%), Positives = 32/54 (59%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVV 462
K++VG L+ ++ + + N FSE G ++ ++ ++ GF F+TF SE+ V
Sbjct: 178 KVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDV 231
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 44.4 bits (100), Expect = 7e-05
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Frame = +2
Query: 68 FVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI-DKVM 235
FV GL +T +K+L D F +G + + D +TG+SR F F+ F+ +S+ D +M
Sbjct: 10 FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAIM 66
Score = 44.4 bits (100), Expect = 7e-05
Identities = 16/56 (28%), Positives = 35/56 (62%)
Frame = +1
Query: 307 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 474
FV GL + + ++ + FS+FG +++ ++ +D+ + + F F+TFE E+ + D +
Sbjct: 10 FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAI 65
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 44.4 bits (100), Expect = 7e-05
Identities = 27/65 (41%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Frame = +2
Query: 26 NSAEAPGRDDDRK----LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFA 193
N A A G+ +D +FVG LS E TD L F Y V D TGRSRGF
Sbjct: 124 NWAYASGQREDTSSHFNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFG 183
Query: 194 FIVFK 208
F+ F+
Sbjct: 184 FVSFR 188
Score = 41.1 bits (92), Expect = 7e-04
Identities = 18/54 (33%), Positives = 32/54 (59%)
Frame = +1
Query: 295 HGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 456
H IFVG LS E++D + FS + T + + +D+ + +GF F++F ++Q
Sbjct: 138 HFNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQ 191
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +2
Query: 11 DSQDHNSAEAPGRDDD-RKLFVGGLSWETTDKELRDHFGAYGE--IESINVKTDPNTG 175
D +D + EAP + ++VG L+ E + +L HF + G IE + V+ D G
Sbjct: 243 DGKDTTNGEAPENNAQYTTVYVGNLAPEVSQVDLHRHFHSLGAGVIEEVRVQRDKGFG 300
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 44.0 bits (99), Expect = 9e-05
Identities = 21/76 (27%), Positives = 42/76 (55%)
Frame = +1
Query: 286 KARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVN 465
++ + IFVGG+ ++ D+++R FS+FG ++ V++P KG F+ F +
Sbjct: 317 ESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVG------KGCGFVQFADRKSAE 370
Query: 466 DLLKTPKRTIGGKEAM 513
D +++ T+ GK +
Sbjct: 371 DAIESLNGTVIGKNTV 386
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +2
Query: 56 DRKLFVGGLSWETTDKELRDHFG-AYGEIESINVKTDPNTGRSRGFAFIVF 205
D +FVG LS + TD L + F Y ++S V D NTGRS+G+ F+ F
Sbjct: 201 DLSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRF 251
Score = 38.7 bits (86), Expect = 0.004
Identities = 20/73 (27%), Positives = 36/73 (49%)
Frame = +2
Query: 17 QDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAF 196
Q H + + DD + L+VG L + L F GE+ S+ V + T +S G+ F
Sbjct: 94 QQHKAIDRGSGDDVKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGF 153
Query: 197 IVFKAPESIDKVM 235
+ F + + ++V+
Sbjct: 154 VEFLSRAAAEEVL 166
Score = 36.3 bits (80), Expect = 0.019
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +2
Query: 2 GGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTG 175
G S + S ++ G + +FVGG+ + D++LR F +GE+ S+ + G
Sbjct: 303 GSNGSMGYGS-QSDGESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGCG 359
Score = 31.5 bits (68), Expect = 0.53
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +1
Query: 304 IFVGGLSSEISDDEIRNFFSE-FGTILEVEMPFDKTKNQRKGFCFITFESE 453
+FVG LS +++D + FS+ + ++ ++ D + KG+ F+ F E
Sbjct: 204 VFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDE 254
>At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}; contains Pfam profile:
PF00076 RNA recognition motif (aka RRM, RBD, or RNP
domain)
Length = 483
Score = 44.0 bits (99), Expect = 9e-05
Identities = 23/74 (31%), Positives = 40/74 (54%)
Frame = +2
Query: 8 GDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRG 187
G + + + E+P R L+VGGL+ ++++RD F A+GEIESI + + +
Sbjct: 211 GKAGEMGTLESPEDQSIRTLYVGGLNSRVLEQDIRDQFYAHGEIESIRILAE------KA 264
Query: 188 FAFIVFKAPESIDK 229
AF+ + E +K
Sbjct: 265 CAFVTYTTREGAEK 278
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 44.0 bits (99), Expect = 9e-05
Identities = 18/54 (33%), Positives = 33/54 (61%)
Frame = +2
Query: 59 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 220
R +FVG + ++ T+++LR+ G G + S + TD TG+ +G+ F +K E+
Sbjct: 9 RCVFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEET 62
Score = 33.1 bits (72), Expect = 0.17
Identities = 11/51 (21%), Positives = 28/51 (54%)
Frame = +1
Query: 304 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 456
+FVG + + +++++R E G ++ + D+ + KG+ F ++ E+
Sbjct: 11 VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEE 61
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 44.0 bits (99), Expect = 9e-05
Identities = 23/70 (32%), Positives = 40/70 (57%)
Frame = +1
Query: 304 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP 483
IFVGGL S ++D++++ F+EFG I+ V++P KG F+ F + + L+
Sbjct: 306 IFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVG------KGCGFVQFVNRPNAEEALEKL 359
Query: 484 KRTIGGKEAM 513
T+ GK+ +
Sbjct: 360 NGTVIGKQTV 369
Score = 41.9 bits (94), Expect = 4e-04
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +2
Query: 56 DRKLFVGGLSWETTDKELRDHFGA-YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 232
D +FVG LS + +D L + F Y +++ V D NTGRS+G+ F+ F K
Sbjct: 196 DLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKA 255
Query: 233 M 235
M
Sbjct: 256 M 256
Score = 35.9 bits (79), Expect = 0.025
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Frame = +2
Query: 65 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK--APESIDKV 232
+FVGGL TD++L+ F +GEI S+ + G+ GF V + A E+++K+
Sbjct: 306 IFVGGLDSSVTDEDLKQPFNEFGEIVSVKIP----VGKGCGFVQFVNRPNAEEALEKL 359
Score = 35.1 bits (77), Expect = 0.043
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +1
Query: 304 IFVGGLSSEISDDEIRNFFSE-FGTILEVEMPFDKTKNQRKGFCFITFESE 453
IFVG LS ++SD+ + FSE + ++ ++ D + KG+ F+ F E
Sbjct: 199 IFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDE 249
Score = 33.9 bits (74), Expect = 0.100
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +2
Query: 53 DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKT--DPNTGRSRGFAFIVFKAPESID 226
+++ ++VG L + L F + E E ++VK + N G S G+ F+ F++ + D
Sbjct: 99 ENKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVAD 158
Query: 227 KVM 235
KV+
Sbjct: 159 KVL 161
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 44.0 bits (99), Expect = 9e-05
Identities = 22/62 (35%), Positives = 33/62 (53%)
Frame = +1
Query: 271 DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 450
DP + G IF+ L + I + + FS FGTIL ++ D T + KG+ F+ FE
Sbjct: 127 DPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVT-GRSKGYGFVQFEK 185
Query: 451 EQ 456
E+
Sbjct: 186 EE 187
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = +2
Query: 65 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 217
L++ L D++L++ F YG + S V +P G SRGF F+ + PE
Sbjct: 334 LYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPE 383
Score = 37.1 bits (82), Expect = 0.011
Identities = 20/59 (33%), Positives = 29/59 (49%)
Frame = +1
Query: 271 DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFE 447
D R ++V L EI +DE+R F +FG I + D++ N R F F+ FE
Sbjct: 220 DENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSR-CFGFVNFE 277
Score = 36.3 bits (80), Expect = 0.019
Identities = 19/52 (36%), Positives = 29/52 (55%)
Frame = +2
Query: 65 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 220
+F+ L +K L + F ++G I S V D TGRS+G+ F+ F+ ES
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEES 188
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 43.6 bits (98), Expect = 1e-04
Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Frame = +2
Query: 14 SQDHNSAEAPGRDDDRK------LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTG 175
S+D S + GR ++ + V G+ ET ++++ + FG +GEI+++N+ D +G
Sbjct: 74 SRDFESLGSDGRPGPQRSVEGWIILVSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSG 133
Query: 176 RSRGFAFIVFKAPESIDKVMAA 241
+G+A I ++ E ++A
Sbjct: 134 YVKGYALIEYEKKEEAQSAISA 155
Score = 37.9 bits (84), Expect = 0.006
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +1
Query: 304 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 456
I V G+ E +++I N F +FG I + + D+ KG+ I +E ++
Sbjct: 97 ILVSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKE 147
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/65 (32%), Positives = 33/65 (50%)
Frame = +2
Query: 41 PGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 220
P D L V +++ TT +L F YG++ + + D TG SRGFAF+ +K +
Sbjct: 10 PDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDE 69
Query: 221 IDKVM 235
K +
Sbjct: 70 AHKAV 74
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/65 (32%), Positives = 33/65 (50%)
Frame = +2
Query: 41 PGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 220
P D L V +++ TT +L F YG++ + + D TG SRGFAF+ +K +
Sbjct: 10 PDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDE 69
Query: 221 IDKVM 235
K +
Sbjct: 70 AHKAV 74
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 42.3 bits (95), Expect = 3e-04
Identities = 26/79 (32%), Positives = 41/79 (51%)
Frame = +2
Query: 14 SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFA 193
+QDH SA + V GLS ++T+++L +G + + V + N+G SRGFA
Sbjct: 288 NQDHFSATPSAT-----VVVKGLSMKSTEEDLYQILAEWGPLHHVRVIREQNSGISRGFA 342
Query: 194 FIVFKAPESIDKVMAAGEH 250
FI F ++ +M EH
Sbjct: 343 FIDFPTVDAARTMMDRIEH 361
Score = 36.3 bits (80), Expect = 0.019
Identities = 20/59 (33%), Positives = 30/59 (50%)
Frame = +2
Query: 65 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 241
L V GL + ++ LR F + I+ + + D T SRGFAF+ F + E K + A
Sbjct: 460 LVVRGLDEDADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEA 518
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/57 (21%), Positives = 29/57 (50%)
Frame = +1
Query: 304 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 474
+ V GLS + +++++ +E+G + V + ++ +GF FI F + ++
Sbjct: 300 VVVKGLSMKSTEEDLYQILAEWGPLHHVRVIREQNSGISRGFAFIDFPTVDAARTMM 356
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = +2
Query: 59 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 238
R +FV + + T L HF +GE+ + TDP TG+ G A+I F E+ + ++
Sbjct: 516 RTIFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFTRKEAAENALS 575
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/57 (24%), Positives = 26/57 (45%)
Frame = +1
Query: 304 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 474
IFV + + D + F++FG +L+ + D Q G +I F ++ + L
Sbjct: 518 IFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFTRKEAAENAL 574
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/63 (31%), Positives = 34/63 (53%)
Frame = +2
Query: 47 RDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 226
R+D+ + V LS +T + +L + F +G + + V D TG SRGF F+ F + E
Sbjct: 209 RNDENSVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQ 268
Query: 227 KVM 235
+ +
Sbjct: 269 RAI 271
Score = 30.7 bits (66), Expect = 0.93
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = +1
Query: 310 VGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 456
V LS + + ++ F FG + V + D+ +GF F+ F S +
Sbjct: 217 VTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSRE 265
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 42.3 bits (95), Expect = 3e-04
Identities = 25/61 (40%), Positives = 39/61 (63%)
Frame = +2
Query: 65 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 244
L+VG L+ ETT+ +L + FG YG+I+ I V + SRGFAFI ++ +++ +AA
Sbjct: 20 LWVGSLTPETTESDLTELFGRYGDIDRITVYS------SRGFAFIYYR---HVEEAVAAK 70
Query: 245 E 247
E
Sbjct: 71 E 71
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 304 IFVGGLSSEISDDEIRNFFSEFGTI 378
++VGG+ +S D++ FS+FG I
Sbjct: 252 LWVGGIGPNVSKDDLEEEFSKFGKI 276
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/62 (32%), Positives = 33/62 (53%)
Frame = +2
Query: 65 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 244
LFVG LS TT+ LR+ YG I+++ + TG SRG+ F+ ++ + + +
Sbjct: 66 LFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDA 125
Query: 245 EH 250
H
Sbjct: 126 HH 127
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/68 (29%), Positives = 36/68 (52%)
Frame = +2
Query: 14 SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFA 193
SQ+ + E + RKLFV L W + ++ + FG G + ++ + + G++RGFA
Sbjct: 80 SQEEKTEETQNSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKD-GKNRGFA 138
Query: 194 FIVFKAPE 217
F+ + E
Sbjct: 139 FVTMASGE 146
Score = 38.7 bits (86), Expect = 0.004
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = +2
Query: 38 APGRDDDRKLFVGGLSWETTDKELRDHFGA--YGEIESINVKTDPNTGRSRGFAFIVFKA 211
APG D KL+V L+W+ LR+ F A + + + V DP GRS G+ F+ F
Sbjct: 188 APG-DTRHKLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPE-GRSSGYGFVSFAT 245
Query: 212 PESIDKVM 235
E + +
Sbjct: 246 REEAENAI 253
Score = 31.5 bits (68), Expect = 0.53
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 450
K+FV L +S ++I F + GT+ VE+ K + +GF F+T S
Sbjct: 96 KLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQK-DGKNRGFAFVTMAS 144
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 42.3 bits (95), Expect = 3e-04
Identities = 15/34 (44%), Positives = 26/34 (76%)
Frame = +1
Query: 304 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDK 405
+FVGGL + ++DD ++N FS++G I+ V++P K
Sbjct: 263 VFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGK 296
Score = 34.7 bits (76), Expect = 0.057
Identities = 19/69 (27%), Positives = 34/69 (49%)
Frame = +2
Query: 29 SAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 208
S + D+ R L++G L + + L F GE+ S V + TG+ G+ FI F
Sbjct: 52 SVQPTTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFA 111
Query: 209 APESIDKVM 235
+ + ++V+
Sbjct: 112 SHAAAERVL 120
Score = 33.1 bits (72), Expect = 0.17
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +2
Query: 2 GGGDSQDHNSAEAPGRDDDRK--LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTG 175
G DS ++A +D +FVGGL TD L++ F YGEI + + G
Sbjct: 240 GQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCG 299
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 42.3 bits (95), Expect = 3e-04
Identities = 15/34 (44%), Positives = 26/34 (76%)
Frame = +1
Query: 304 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDK 405
+FVGGL + ++DD ++N FS++G I+ V++P K
Sbjct: 263 VFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGK 296
Score = 34.7 bits (76), Expect = 0.057
Identities = 19/69 (27%), Positives = 34/69 (49%)
Frame = +2
Query: 29 SAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 208
S + D+ R L++G L + + L F GE+ S V + TG+ G+ FI F
Sbjct: 52 SVQPTTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFA 111
Query: 209 APESIDKVM 235
+ + ++V+
Sbjct: 112 SHAAAERVL 120
Score = 33.1 bits (72), Expect = 0.17
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +2
Query: 2 GGGDSQDHNSAEAPGRDDDRK--LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTG 175
G DS ++A +D +FVGGL TD L++ F YGEI + + G
Sbjct: 240 GQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCG 299
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/64 (29%), Positives = 33/64 (51%)
Frame = +1
Query: 304 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP 483
+++G +S +++++ FS G I ++ M DK GFCF+ F S + D +K
Sbjct: 36 VYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDAVKYI 95
Query: 484 KRTI 495
TI
Sbjct: 96 SGTI 99
Score = 40.7 bits (91), Expect = 9e-04
Identities = 18/54 (33%), Positives = 33/54 (61%)
Frame = +2
Query: 65 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 226
+++G +S+ TT+++L + F GEI+ I + D NT GF F++F + E +
Sbjct: 36 VYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTE 89
>At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 363
Score = 41.9 bits (94), Expect = 4e-04
Identities = 18/43 (41%), Positives = 28/43 (65%)
Frame = +2
Query: 35 EAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTD 163
E P + + L+VGGL+ ++++ DHF AYGE+ESI V +
Sbjct: 217 EPPEDESIKTLYVGGLNSRIFEQDIHDHFYAYGEMESIRVMAE 259
>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 173
Score = 41.9 bits (94), Expect = 4e-04
Identities = 14/58 (24%), Positives = 35/58 (60%)
Frame = +1
Query: 304 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 477
+++G + +SD + + + G ++++ +P DK ++ KGF F +E+E++ + +K
Sbjct: 9 VYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEEIADYAVK 66
Score = 31.5 bits (68), Expect = 0.53
Identities = 13/54 (24%), Positives = 27/54 (50%)
Frame = +2
Query: 65 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 226
+++G + +D+ L D G + +++ D T + +GFAF ++ E D
Sbjct: 9 VYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEEIAD 62
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 41.9 bits (94), Expect = 4e-04
Identities = 18/75 (24%), Positives = 39/75 (52%)
Frame = +2
Query: 11 DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGF 190
+ + H+ + + ++FVG L ++++L+ FG GE+ + + +P T +S+G
Sbjct: 198 EEEHHDVLHERRKRKEFEIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGS 257
Query: 191 AFIVFKAPESIDKVM 235
AF+ F E + +
Sbjct: 258 AFLRFATVEQAKRAV 272
Score = 33.1 bits (72), Expect = 0.17
Identities = 13/54 (24%), Positives = 28/54 (51%)
Frame = +2
Query: 59 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 220
+ +F+ GL ++ +RD YG++E + + + + R + F F+ F E+
Sbjct: 391 KTIFIDGLLPSWNEERVRDLLKPYGKLEKVELARNMPSARRKDFGFVTFDTHEA 444
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = +2
Query: 53 DDRKLFVGGLSWETTDKELRDHFGAYG--EIESINVKTDPNT-GRSRGFAFIVFKA 211
D+ LFVG + T + LR+ YG ++ I + D N +RG+AF+ F +
Sbjct: 292 DNDTLFVGNICKIWTPEALREKLKHYGVENMDDITLVEDSNNVNMNRGYAFLEFSS 347
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 41.9 bits (94), Expect = 4e-04
Identities = 20/76 (26%), Positives = 42/76 (55%)
Frame = +1
Query: 286 KARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVN 465
++ + IFVGGL ++++++++ FS+FG ++ V++P KG F+ F + Q
Sbjct: 323 ESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVG------KGCGFVQFANRQSAE 376
Query: 466 DLLKTPKRTIGGKEAM 513
+ + T+ GK +
Sbjct: 377 EAIGNLNGTVIGKNTV 392
Score = 41.5 bits (93), Expect = 5e-04
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +2
Query: 56 DRKLFVGGLSWETTDKELRDHF-GAYGEIESINVKTDPNTGRSRGFAFIVF 205
D +FVG L+ + +D L + F G Y ++ V D NTGRS+G+ F+ F
Sbjct: 212 DLSIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRF 262
Score = 36.3 bits (80), Expect = 0.019
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = +2
Query: 26 NSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTG 175
N + + G ++ +FVGGL + T+++L F +GE+ S+ + G
Sbjct: 316 NGSMSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVGKGCG 365
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 41.9 bits (94), Expect = 4e-04
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +2
Query: 56 DRKLFVGGLSWETTDKELRDHFGA-YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 232
D +FVG LS + +D L + F Y +++ V D NTGRS+G+ F+ F K
Sbjct: 196 DLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKA 255
Query: 233 M 235
M
Sbjct: 256 M 256
Score = 35.1 bits (77), Expect = 0.043
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +1
Query: 304 IFVGGLSSEISDDEIRNFFSE-FGTILEVEMPFDKTKNQRKGFCFITFESE 453
IFVG LS ++SD+ + FSE + ++ ++ D + KG+ F+ F E
Sbjct: 199 IFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDE 249
Score = 33.9 bits (74), Expect = 0.100
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +2
Query: 53 DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKT--DPNTGRSRGFAFIVFKAPESID 226
+++ ++VG L + L F + E E ++VK + N G S G+ F+ F++ + D
Sbjct: 99 ENKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVAD 158
Query: 227 KVM 235
KV+
Sbjct: 159 KVL 161
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 41.9 bits (94), Expect = 4e-04
Identities = 16/47 (34%), Positives = 29/47 (61%)
Frame = +1
Query: 304 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 444
++VGGL+ E+++ + F FG I +V+ P D+ + + F F+TF
Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTF 61
Score = 35.1 bits (77), Expect = 0.043
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +2
Query: 65 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 235
L+VGGL+ E + L F +G+I+ + D + R F F+ F E M
Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAM 71
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 41.5 bits (93), Expect = 5e-04
Identities = 21/65 (32%), Positives = 39/65 (60%)
Frame = +1
Query: 262 KKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFIT 441
K D + + H K+FVG L +S+ E+++ FSE+GTI ++++ + KG F+
Sbjct: 89 KYADGELERLEH-KLFVGMLPKNVSETEVQSLFSEYGTIKDLQI-LRGSLQTSKGCLFLK 146
Query: 442 FESEQ 456
+ES++
Sbjct: 147 YESKE 151
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/78 (24%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 480
K+FVG + +++ ++ F EF + EV + +KT +G CF+T + + + ++ +
Sbjct: 13 KLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVINS 72
Query: 481 --PKRTIGGKEAM*SVQH 528
K+T+ G + V++
Sbjct: 73 FHNKKTLPGASSPLQVKY 90
Score = 33.9 bits (74), Expect = 0.100
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +2
Query: 32 AEAPGRDDDR-KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 208
AE +++R KLFVG + T+ +L F + + +N+ + T RG F+
Sbjct: 2 AEETMENEERVKLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCP 61
Query: 209 APESIDKVM 235
E DKV+
Sbjct: 62 TREDADKVI 70
Score = 32.3 bits (70), Expect = 0.30
Identities = 21/80 (26%), Positives = 33/80 (41%)
Frame = +2
Query: 65 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 244
LF+ + E D+EL F +G++ S V D TG S+ F FI + + + +
Sbjct: 332 LFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTM 391
Query: 245 EHXXXXXXXXXXXLKHDMGR 304
LK D G+
Sbjct: 392 NGCQLSGKKLKVQLKRDNGQ 411
Score = 31.1 bits (67), Expect = 0.70
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = +2
Query: 56 DRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 235
+ KLFVG L ++ E++ F YG I+ + + + S+G F+ +++ E M
Sbjct: 99 EHKLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRG-SLQTSKGCLFLKYESKEQAVAAM 157
Query: 236 AA--GEH 250
A G H
Sbjct: 158 EALNGRH 164
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 41.1 bits (92), Expect = 7e-04
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +2
Query: 65 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 214
LFVG L W TTD EL YG ++ + + +G+S+G+ + F P
Sbjct: 236 LFVGDLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEFYDP 285
Score = 31.5 bits (68), Expect = 0.53
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +1
Query: 304 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 444
+FVG L +D E+ ++G + EV+ +K + KG+C + F
Sbjct: 236 LFVGDLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEF 282
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 40.7 bits (91), Expect = 9e-04
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Frame = +2
Query: 8 GDSQDHNS--AEAPGRD--DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTG 175
G +QD S A G++ D R ++VG + + T +E++ HF G + + + D G
Sbjct: 68 GATQDPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMD-KFG 126
Query: 176 RSRGFAFIVFKAPESIDKVMAAGE 247
+ +GFA++ F E++ + + E
Sbjct: 127 QPKGFAYVEFVEVEAVQEALQLNE 150
Score = 36.3 bits (80), Expect = 0.019
Identities = 19/77 (24%), Positives = 38/77 (49%)
Frame = +1
Query: 304 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP 483
++VG + + +E++ F GT+ V + DK Q KGF ++ F + V + L+
Sbjct: 91 VYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKF-GQPKGFAYVEFVEVEAVQEALQLN 149
Query: 484 KRTIGGKEAM*SVQHQN 534
+ + G++ S + N
Sbjct: 150 ESELHGRQLKVSPKRTN 166
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 40.7 bits (91), Expect = 9e-04
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Frame = +2
Query: 8 GDSQDHNS--AEAPGRD--DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTG 175
G +QD S A G++ D R ++VG + + T +E++ HF G + + + D G
Sbjct: 68 GATQDPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMD-KFG 126
Query: 176 RSRGFAFIVFKAPESIDKVMAAGE 247
+ +GFA++ F E++ + + E
Sbjct: 127 QPKGFAYVEFVEVEAVQEALQLNE 150
Score = 36.3 bits (80), Expect = 0.019
Identities = 19/77 (24%), Positives = 38/77 (49%)
Frame = +1
Query: 304 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP 483
++VG + + +E++ F GT+ V + DK Q KGF ++ F + V + L+
Sbjct: 91 VYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKF-GQPKGFAYVEFVEVEAVQEALQLN 149
Query: 484 KRTIGGKEAM*SVQHQN 534
+ + G++ S + N
Sbjct: 150 ESELHGRQLKVSPKRTN 166
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/51 (39%), Positives = 29/51 (56%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESE 453
KI V L S+D ++ FS FG I EV++ D+ + KG+ FI F S+
Sbjct: 41 KIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQ 91
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/52 (34%), Positives = 30/52 (57%)
Frame = +2
Query: 62 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 217
K+ V L + T++ L+ F A+GEI + + D RS+G+AFI F + +
Sbjct: 41 KIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQD 92
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 40.3 bits (90), Expect = 0.001
Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Frame = +1
Query: 262 KKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFIT 441
K D + + H K+FVG L +S+ E+++ FS++GTI ++++ + KG F+
Sbjct: 95 KYADGELERLEH-KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQI-LRGAQQTSKGCAFLK 152
Query: 442 FES-EQVVNDLLKTPKRTIGGKEAM 513
+E+ EQ V+ + +I GK M
Sbjct: 153 YETKEQAVSAM-----ESINGKHKM 172
Score = 37.1 bits (82), Expect = 0.011
Identities = 18/64 (28%), Positives = 34/64 (53%)
Frame = +2
Query: 50 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 229
++ KLFVG + ++ +L F + ++ +N+ D T SRG F++ + E DK
Sbjct: 15 EESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADK 74
Query: 230 VMAA 241
++ A
Sbjct: 75 LVNA 78
Score = 32.3 bits (70), Expect = 0.30
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = +2
Query: 56 DRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 235
+ KLFVG L ++ E++ F YG I+ + + S+G AF+ ++ E M
Sbjct: 105 EHKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQ-TSKGCAFLKYETKEQAVSAM 163
Query: 236 AA--GEH 250
+ G+H
Sbjct: 164 ESINGKH 170
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +2
Query: 65 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 205
LF+ + E D+EL F ++G + S V D TG S+ F + F
Sbjct: 350 LFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGKLSF 396
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 40.3 bits (90), Expect = 0.001
Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Frame = +1
Query: 262 KKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFIT 441
K D + + H K+FVG L +S+ E+++ FS++GTI ++++ + KG F+
Sbjct: 95 KYADGELERLEH-KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQI-LRGAQQTSKGCAFLK 152
Query: 442 FES-EQVVNDLLKTPKRTIGGKEAM 513
+E+ EQ V+ + +I GK M
Sbjct: 153 YETKEQAVSAM-----ESINGKHKM 172
Score = 37.1 bits (82), Expect = 0.011
Identities = 18/64 (28%), Positives = 34/64 (53%)
Frame = +2
Query: 50 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 229
++ KLFVG + ++ +L F + ++ +N+ D T SRG F++ + E DK
Sbjct: 15 EESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADK 74
Query: 230 VMAA 241
++ A
Sbjct: 75 LVNA 78
Score = 32.3 bits (70), Expect = 0.30
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = +2
Query: 56 DRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 235
+ KLFVG L ++ E++ F YG I+ + + S+G AF+ ++ E M
Sbjct: 105 EHKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQ-TSKGCAFLKYETKEQAVSAM 163
Query: 236 AA--GEH 250
+ G+H
Sbjct: 164 ESINGKH 170
Score = 30.7 bits (66), Expect = 0.93
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +2
Query: 65 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV--MA 238
LF+ + E D+EL F ++G + S V D TG S+ F F+ + + + M
Sbjct: 351 LFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAIDMM 410
Query: 239 AGEH 250
G H
Sbjct: 411 NGRH 414
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/48 (37%), Positives = 31/48 (64%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 444
+++VG L +S+D++R F FG++ V++P D+T KGF F+ F
Sbjct: 286 RLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDET-GLCKGFGFVQF 332
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/52 (34%), Positives = 34/52 (65%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 456
K+FVG L +S+ E+++ FSE+GTI ++++ + KG F+ +ES++
Sbjct: 110 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQI-LRGSLQTSKGCLFLKYESKE 160
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/78 (24%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 480
K+FVG + +++ ++ F EF + EV + +KT +G CF+T + + + ++ +
Sbjct: 13 KLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVINS 72
Query: 481 --PKRTIGGKEAM*SVQH 528
K+T+ G + V++
Sbjct: 73 FHNKKTLPGASSPLQVKY 90
Score = 33.9 bits (74), Expect = 0.100
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +2
Query: 32 AEAPGRDDDR-KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 208
AE +++R KLFVG + T+ +L F + + +N+ + T RG F+
Sbjct: 2 AEETMENEERVKLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCP 61
Query: 209 APESIDKVM 235
E DKV+
Sbjct: 62 TREDADKVI 70
Score = 32.3 bits (70), Expect = 0.30
Identities = 21/80 (26%), Positives = 33/80 (41%)
Frame = +2
Query: 65 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 244
LF+ + E D+EL F +G++ S V D TG S+ F FI + + + +
Sbjct: 341 LFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTM 400
Query: 245 EHXXXXXXXXXXXLKHDMGR 304
LK D G+
Sbjct: 401 NGCQLSGKKLKVQLKRDNGQ 420
Score = 31.1 bits (67), Expect = 0.70
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = +2
Query: 56 DRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 235
+ KLFVG L ++ E++ F YG I+ + + + S+G F+ +++ E M
Sbjct: 108 EHKLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRG-SLQTSKGCLFLKYESKEQAVAAM 166
Query: 236 AA--GEH 250
A G H
Sbjct: 167 EALNGRH 173
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/59 (28%), Positives = 32/59 (54%)
Frame = +2
Query: 50 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 226
DD ++VGGL ++ T++ +R F YG + ++ + D + R + + F+ F S D
Sbjct: 4 DDGNSVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSV-RGKCYGFVTFSNRRSAD 61
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 39.9 bits (89), Expect = 0.002
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +2
Query: 20 DHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGA-YGEIESINVKTDPNTGRSRGFAF 196
+ AE P + +FVG L+ + TD L + F A Y ++ V D TGRS+G+ F
Sbjct: 164 ERRQAEGP----EHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGF 219
Query: 197 IVFKAPES 220
+ F A ES
Sbjct: 220 VRF-ADES 226
Score = 37.1 bits (82), Expect = 0.011
Identities = 15/66 (22%), Positives = 36/66 (54%)
Frame = +1
Query: 208 GPRVNRQGHGCW*THHNNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEV 387
GP N++ + N + + ++ + IFVG + +++D++++ F +FG ++ V
Sbjct: 248 GPAANKKPLTMQPASYQNTQGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHV 307
Query: 388 EMPFDK 405
++P K
Sbjct: 308 KIPAGK 313
Score = 33.5 bits (73), Expect = 0.13
Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Frame = +1
Query: 277 KKAKARHGKIFVGGLSSEISDDEIRNFFSE-FGTILEVEMPFDKTKNQRKGFCFITF--E 447
++A+ +FVG L+ +++D + F + ++ ++ D+T + KG+ F+ F E
Sbjct: 166 RQAEGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADE 225
Query: 448 SEQV 459
SEQ+
Sbjct: 226 SEQI 229
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = +2
Query: 65 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTG 175
+FVG + T+ +L+ FG +GE+ + + G
Sbjct: 280 IFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKRCG 316
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +1
Query: 295 HGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 474
HG + V + + +E+R F FG + +V +P D Q +GF F+ F +
Sbjct: 46 HGSLLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQ 105
Query: 475 KT-PKRTIGGKE 507
++ +R+ G+E
Sbjct: 106 RSMNRRSFAGRE 117
Score = 35.1 bits (77), Expect = 0.043
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +2
Query: 65 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 205
L V + + +ELR+ F +G + + + D +G+ RGFAF+ F
Sbjct: 49 LLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEF 95
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/76 (26%), Positives = 35/76 (46%)
Frame = +2
Query: 8 GDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRG 187
G + ++ R D+ + V LS +T +L + F +G + +V D T SRG
Sbjct: 157 GADRKAGGSDMRSRHDENSVRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRG 216
Query: 188 FAFIVFKAPESIDKVM 235
F F+ F + E + +
Sbjct: 217 FGFVSFVSREDAQRAI 232
Score = 32.3 bits (70), Expect = 0.30
Identities = 15/68 (22%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +1
Query: 259 NKKVDPKKAKARHGK--IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFC 432
++K ++RH + + V LS + ++ F FG + + D+ + +GF
Sbjct: 159 DRKAGGSDMRSRHDENSVRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFG 218
Query: 433 FITFESEQ 456
F++F S +
Sbjct: 219 FVSFVSRE 226
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/52 (34%), Positives = 29/52 (55%)
Frame = +1
Query: 304 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQV 459
+++G + + EI FFS+FGT+ V + +K + K F FI FE +V
Sbjct: 62 LYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEV 113
Score = 38.3 bits (85), Expect = 0.005
Identities = 21/80 (26%), Positives = 40/80 (50%)
Frame = +2
Query: 5 GGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSR 184
GG ++ P ++ L++G + + E+ F +G ++ + V + TG+S+
Sbjct: 42 GGPARKAPVTTPPLQNKATVLYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSK 101
Query: 185 GFAFIVFKAPESIDKVMAAG 244
F FI F+ PE + +AAG
Sbjct: 102 HFGFIQFEDPEVAE--IAAG 119
>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
protein
Length = 573
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +2
Query: 65 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 205
LFVG L W TTD E+ YG ++ I + +G+S+G+ + F
Sbjct: 204 LFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEF 250
Score = 34.3 bits (75), Expect = 0.075
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +1
Query: 304 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 444
+FVG L +D EI + S++G + E++ ++ + KG+C + F
Sbjct: 204 LFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEF 250
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 39.1 bits (87), Expect = 0.003
Identities = 27/120 (22%), Positives = 50/120 (41%)
Frame = +2
Query: 65 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 244
L+V L + T+ ++ F +G++ + V D +T +SRG AF+++ + E K +
Sbjct: 59 LYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSM 118
Query: 245 EHXXXXXXXXXXXLKHDMGRFLSEDSAVKSQMMKSETSSVNLELS*KWRCPLTKQRTKEK 424
+ + D GR SE + KS E + CP + +E+
Sbjct: 119 DAKILNGRKLTVSIAADNGR-ASEFIKKRVYKDKSRCYECGDEGHLSYECPKNQLGPRER 177
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 39.1 bits (87), Expect = 0.003
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Frame = +2
Query: 2 GGGDSQDHNSAEAPGRDDDR--KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTG 175
GG + S A D KL+V +S T+ ++R F YG + I + D TG
Sbjct: 89 GGSSLRKRRSQSATDNADGSIAKLYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKMTG 148
Query: 176 RSRGFAFIVFKAPESIDKVMAA 241
+ FI +K E + +AA
Sbjct: 149 ERAAYCFIKYKKVEEGNAAIAA 170
Score = 37.1 bits (82), Expect = 0.011
Identities = 21/55 (38%), Positives = 31/55 (56%)
Frame = +2
Query: 53 DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 217
D+ KL+V L+ +TT E+ + F YG IE I + D + RG+AF+ F E
Sbjct: 205 DNPKLYVRCLNKQTTKMEVNEVFSRYGIIEDIYMALD-DMKICRGYAFVQFSCKE 258
>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 501
Score = 38.7 bits (86), Expect = 0.004
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Frame = +2
Query: 50 DDDRKLFVGGLSWETTDKELRDHF----GAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 217
D R +F+G L ++ D+E+ F IE++ V DP+ +G A+++FK E
Sbjct: 280 DPKRTVFMGNLPFDVKDEEVYQLFTGKSNLENSIEAVRVIRDPHLNIGKGIAYVLFKTRE 339
Query: 218 SIDKVMAAG 244
+ + V+ G
Sbjct: 340 AANLVLKKG 348
Score = 33.9 bits (74), Expect = 0.100
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Frame = +2
Query: 44 GRDDDRKL----FVGGLSWETTDKELRDHFGAYGEIESINVKTDP--NTGRSRGFAFIVF 205
G DD+ KL FVG L + K + F +GE+ES+ +++ P ++ R+R A ++
Sbjct: 162 GFDDESKLLRTVFVGNLPLKVKKKVILKEFSKFGEVESVRIRSVPIVDSKRTRKGAIMLK 221
Query: 206 KAPESIDKVMA 238
+ E V A
Sbjct: 222 QINEKASSVHA 232
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Frame = +1
Query: 250 HHNNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFF---SEFGTILE-VEMPFDKTKNQ 417
H + DPK+ +F+G L ++ D+E+ F S +E V + D N
Sbjct: 273 HDDTHLYDPKRT------VFMGNLPFDVKDEEVYQLFTGKSNLENSIEAVRVIRDPHLNI 326
Query: 418 RKGFCFITFESEQVVNDLLK 477
KG ++ F++ + N +LK
Sbjct: 327 GKGIAYVLFKTREAANLVLK 346
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 38.3 bits (85), Expect = 0.005
Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = +2
Query: 14 SQDHNSAEAP-GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGF 190
S+DH S + G + KL++ L + ++++++ F GE++ V D +GRS+G
Sbjct: 70 SEDHRSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFD-RSGRSKGT 128
Query: 191 AFIVF 205
A +V+
Sbjct: 129 AEVVY 133
>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
putative
Length = 178
Score = 38.3 bits (85), Expect = 0.005
Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = +2
Query: 14 SQDHNSAEAP-GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGF 190
S+DH S + G + KL++ L + ++++++ F GE++ V D +GRS+G
Sbjct: 6 SEDHRSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFD-RSGRSKGT 64
Query: 191 AFIVF 205
A +V+
Sbjct: 65 AEVVY 69
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 38.3 bits (85), Expect = 0.005
Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = +2
Query: 14 SQDHNSAEAP-GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGF 190
S+DH S + G + KL++ L + ++++++ F GE++ V D +GRS+G
Sbjct: 72 SEDHRSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFD-RSGRSKGT 130
Query: 191 AFIVF 205
A +V+
Sbjct: 131 AEVVY 135
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 38.3 bits (85), Expect = 0.005
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Frame = +1
Query: 211 PRVNRQGHGCW*THHNNKKVDPKKAKARH---GKIFVGGLSSEISDDEIRNFFSEFGTIL 381
P N G+G + H P K ++ +++G L + DD + N FS FG I+
Sbjct: 450 PWANNAGNGA--SAHPGLGSTPTKPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIV 507
Query: 382 EVEMPFDKTKNQRKGFCFITFESEQVVN 465
++ D+ KG+ F+ + Q+ N
Sbjct: 508 MAKVIKDRVTGLSKGYGFVKYADVQMAN 535
Score = 33.5 bits (73), Expect = 0.13
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +2
Query: 53 DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 205
D+ L++G L D L + F ++GEI V D TG S+G+ F+ +
Sbjct: 478 DETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKY 528
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 38.3 bits (85), Expect = 0.005
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Frame = +1
Query: 211 PRVNRQGHGCW*THHNNKKVDPKKAKARH---GKIFVGGLSSEISDDEIRNFFSEFGTIL 381
P N G+G + H P K ++ +++G L + DD + N FS FG I+
Sbjct: 450 PWANNAGNGA--SAHPGLGSTPTKPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIV 507
Query: 382 EVEMPFDKTKNQRKGFCFITFESEQVVN 465
++ D+ KG+ F+ + Q+ N
Sbjct: 508 MAKVIKDRVTGLSKGYGFVKYADVQMAN 535
Score = 33.5 bits (73), Expect = 0.13
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +2
Query: 53 DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 205
D+ L++G L D L + F ++GEI V D TG S+G+ F+ +
Sbjct: 478 DETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKY 528
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 38.3 bits (85), Expect = 0.005
Identities = 15/51 (29%), Positives = 30/51 (58%)
Frame = +1
Query: 304 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 456
+FV G S +S+ ++ FSEFG + V++ ++ Q G+ ++ F S++
Sbjct: 60 LFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKE 110
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 38.3 bits (85), Expect = 0.005
Identities = 15/51 (29%), Positives = 30/51 (58%)
Frame = +1
Query: 304 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 456
+FV G S +S+ ++ FSEFG + V++ ++ Q G+ ++ F S++
Sbjct: 79 LFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKE 129
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 38.3 bits (85), Expect = 0.005
Identities = 22/79 (27%), Positives = 36/79 (45%)
Frame = +2
Query: 14 SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFA 193
S+DH S+ G L + L + +LRD F +G ++ I + + TG RGF
Sbjct: 38 SRDHESSGPSG------LLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFG 91
Query: 194 FIVFKAPESIDKVMAAGEH 250
F+ ++ E + M H
Sbjct: 92 FVKYRYAEDAAEAMKRMNH 110
Score = 33.1 bits (72), Expect = 0.17
Identities = 14/69 (20%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = +1
Query: 304 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFE-SEQVVNDLLKT 480
+ + L + +++R+ F FG + ++ +P + + +GF F+ + +E + +
Sbjct: 49 LLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRM 108
Query: 481 PKRTIGGKE 507
+ IGG+E
Sbjct: 109 NHKVIGGRE 117
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 37.9 bits (84), Expect = 0.006
Identities = 24/88 (27%), Positives = 39/88 (44%)
Frame = +2
Query: 59 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 238
R ++VG L + ++E+ D F YG + I++K P R G+AF+ F+ D +
Sbjct: 7 RTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPP---RPPGYAFVEFEDARDADDAIY 63
Query: 239 AGEHXXXXXXXXXXXLKHDMGRFLSEDS 322
+ L H GR S D+
Sbjct: 64 GRDGYDFDGHHLRVELAHG-GRRSSHDA 90
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +2
Query: 2 GGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEI 139
GGGD P R + ++ V GL + ++L+DH GE+
Sbjct: 103 GGGDGGGRE--RGPSRRSEYRVVVSGLPSSASWQDLKDHMRKGGEV 146
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 37.9 bits (84), Expect = 0.006
Identities = 24/88 (27%), Positives = 39/88 (44%)
Frame = +2
Query: 59 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 238
R ++VG L + ++E+ D F YG + I++K P R G+AF+ F+ D +
Sbjct: 7 RTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPP---RPPGYAFVEFEDARDADDAIY 63
Query: 239 AGEHXXXXXXXXXXXLKHDMGRFLSEDS 322
+ L H GR S D+
Sbjct: 64 GRDGYDFDGHHLRVELAHG-GRRSSHDA 90
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +2
Query: 2 GGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEI 139
GGGD P R + ++ V GL + ++L+DH GE+
Sbjct: 103 GGGDGGGRE--RGPSRRSEYRVVVSGLPSSASWQDLKDHMRKGGEV 146
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 37.5 bits (83), Expect = 0.008
Identities = 21/73 (28%), Positives = 33/73 (45%)
Frame = +2
Query: 5 GGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSR 184
G +D +E P ++D +LF G L E D L F + V D TG+++
Sbjct: 121 GQSWEDPTLSEWP--ENDYRLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTK 178
Query: 185 GFAFIVFKAPESI 223
G+ F+ F P +
Sbjct: 179 GYGFVSFLNPADL 191
Score = 36.3 bits (80), Expect = 0.019
Identities = 15/48 (31%), Positives = 28/48 (58%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 444
++F G L +E++DD + F+ F T ++ DK + KG+ F++F
Sbjct: 138 RLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSF 185
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 37.1 bits (82), Expect = 0.011
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = +1
Query: 271 DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 450
DP + G +FV L I + ++ + FS FG +L ++ D KG+ F+ F S
Sbjct: 22 DPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARD-ASGVSKGYGFVQFYS 80
Query: 451 E 453
+
Sbjct: 81 D 81
Score = 35.1 bits (77), Expect = 0.043
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Frame = +1
Query: 286 KARHG-KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFE-SEQV 459
K R G ++V L + + ++ FSEFGTI ++ + KG F+ F SE+
Sbjct: 218 KTRKGMNLYVKNLDDSVDNTKLEELFSEFGTITSCKV-MVHSNGISKGVGFVEFSTSEEA 276
Query: 460 VNDLLKTPKRTIGGK 504
+LK + +G K
Sbjct: 277 SKAMLKMNGKMVGNK 291
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 37.1 bits (82), Expect = 0.011
Identities = 20/57 (35%), Positives = 30/57 (52%)
Frame = +2
Query: 56 DRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 226
+R ++VG L + E+ D F YG I I++K P R G+AF+ F+ P D
Sbjct: 6 NRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPP---RPPGYAFVEFEDPRDAD 59
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +2
Query: 14 SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEI 139
S ++++ AP R D ++ V GL + ++L+DH G++
Sbjct: 94 SSSYSASRAPSRRSDYRVLVTGLPPSASWQDLKDHMRKAGDV 135
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 36.7 bits (81), Expect = 0.014
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +1
Query: 271 DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRK-GFCFITFE 447
+P++ + GKIFVG L + I E FF +FG I V + + ++ GF FI +
Sbjct: 156 NPQQEFRQEGKIFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHHEVEKNAGFGFIIYA 215
Query: 448 SEQ 456
+E+
Sbjct: 216 AEK 218
Score = 33.9 bits (74), Expect = 0.100
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +2
Query: 62 KLFVGGLSWETTDKELRDHFGAYGEIES-INVKTDPNTGRSRGFAFIVFKAPESIDKVM 235
K+FVG L E + F +G IE+ I +K ++ GF FI++ A +S K +
Sbjct: 166 KIFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHHEVEKNAGFGFIIYAAEKSAMKAV 224
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 36.3 bits (80), Expect = 0.019
Identities = 20/54 (37%), Positives = 29/54 (53%)
Frame = +1
Query: 316 GLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 477
GLS+ +D +R F+ F +++ D+ + KGF FITFESE LK
Sbjct: 77 GLSAYTTDQSLRQLFAPFARLIK-----DQQTQRPKGFGFITFESEDDAQKALK 125
Score = 34.7 bits (76), Expect = 0.057
Identities = 20/55 (36%), Positives = 29/55 (52%)
Frame = +2
Query: 77 GLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 241
GLS TTD+ LR F + + +K D T R +GF FI F++ + K + A
Sbjct: 77 GLSAYTTDQSLRQLFAPFARL----IK-DQQTQRPKGFGFITFESEDDAQKALKA 126
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 36.3 bits (80), Expect = 0.019
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = +2
Query: 35 EAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 214
E P + LFV LS +T ++ D F GE+ SI + + + G+ G+ F+ F +
Sbjct: 236 ERPPNSVEEVLFVANLSPQTKISDIFDFFNCVGEVVSIRLMVN-HEGKHVGYGFVEFASA 294
Query: 215 ESIDKVM 235
+ K +
Sbjct: 295 DETKKAL 301
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/70 (25%), Positives = 31/70 (44%)
Frame = +1
Query: 268 VDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFE 447
+ K+A R +FV L E I +FF + G ++ V++ K + G F+ F
Sbjct: 117 ISVKEAAVREKTLFVANLPYETKIPNIIDFFKKVGEVVRVQL-IVNLKGKLVGCGFVEFA 175
Query: 448 SEQVVNDLLK 477
S + L+
Sbjct: 176 SVNEAEEALQ 185
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +1
Query: 292 RHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 450
R +FV LS + I NFF + G ++ V + + T + G F+ F S
Sbjct: 357 RKKTLFVAHLSRKTEITHIINFFKDVGEVVHVRLILNHT-GKHVGCAFVEFGS 408
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 36.3 bits (80), Expect = 0.019
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Frame = +1
Query: 304 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES-EQVVNDLLKT 480
+++ L +++S++ + FS+FG ++ + D + + +GF FI FES + +L
Sbjct: 19 LYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKD-FRGESRGFAFIEFESADSAGRAMLHM 77
Query: 481 PKRTIGGK 504
R IG K
Sbjct: 78 DGRLIGQK 85
Score = 32.7 bits (71), Expect = 0.23
Identities = 20/75 (26%), Positives = 38/75 (50%)
Frame = +2
Query: 11 DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGF 190
+ +H S+ P + L++ L + +++ L F +G++ +V G SRGF
Sbjct: 3 NDDNHGSSSCPRKFTS--LYIANLDAQVSEEMLFLMFSDFGKVIR-SVLAKDFRGESRGF 59
Query: 191 AFIVFKAPESIDKVM 235
AFI F++ +S + M
Sbjct: 60 AFIEFESADSAGRAM 74
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 36.3 bits (80), Expect = 0.019
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +2
Query: 59 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 205
R ++VG L + ++E+ D F YG + I++K P R G+AF+ F
Sbjct: 7 RTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPP---RPPGYAFVEF 52
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = +2
Query: 2 GGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEI 139
GGG + + P R + ++ V GL + ++L+DH G++
Sbjct: 100 GGGRGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDHMRKGGDV 145
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 36.3 bits (80), Expect = 0.019
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +2
Query: 59 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 205
R ++VG L + ++E+ D F YG + I++K P R G+AF+ F
Sbjct: 7 RTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPP---RPPGYAFVEF 52
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = +2
Query: 2 GGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEI 139
GGG + + P R + ++ V GL + ++L+DH G++
Sbjct: 100 GGGRGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDHMRKGGDV 145
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 36.3 bits (80), Expect = 0.019
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +2
Query: 59 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 205
R ++VG L + ++E+ D F YG + I++K P R G+AF+ F
Sbjct: 7 RTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPP---RPPGYAFVEF 52
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = +2
Query: 2 GGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEI 139
GGG + + P R + ++ V GL + ++L+DH G++
Sbjct: 100 GGGRGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDHMRKGGDV 145
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 35.9 bits (79), Expect = 0.025
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = +2
Query: 35 EAPGRDDDRKLFVGGLSWETTDKELRDHFGA-YGEIESINVKTDPNTGRSRGFAFIVFKA 211
E P LFV L++E K L++ F A G + S V N RS G+ F+ FK
Sbjct: 181 ETPSPVPTFNLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKT 240
Query: 212 PESIDKVM 235
+ + +
Sbjct: 241 KKQAEAAL 248
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 35.9 bits (79), Expect = 0.025
Identities = 15/58 (25%), Positives = 30/58 (51%)
Frame = +1
Query: 277 KKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 450
KKA + V LS +++ ++ F FG ++ VE+ D+ N +G ++ F++
Sbjct: 91 KKAVQESLVLHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKA 148
Score = 34.3 bits (75), Expect = 0.075
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +2
Query: 65 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 229
L V LS + L++ FG +GE+ + + D RG ++ FKA +K
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEK 154
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 35.9 bits (79), Expect = 0.025
Identities = 15/58 (25%), Positives = 30/58 (51%)
Frame = +1
Query: 277 KKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 450
KKA + V LS +++ ++ F FG ++ VE+ D+ N +G ++ F++
Sbjct: 91 KKAVQESLVLHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKA 148
Score = 34.3 bits (75), Expect = 0.075
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +2
Query: 65 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 229
L V LS + L++ FG +GE+ + + D RG ++ FKA +K
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEK 154
>At3g21100.1 68416.m02667 RNA recognition motif (RRM)-containing
protein contains Pfam profile:PF00076 RNA recognition
motif
Length = 602
Score = 35.5 bits (78), Expect = 0.033
Identities = 15/50 (30%), Positives = 29/50 (58%)
Frame = +1
Query: 325 SEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 474
S +D+++ N+F FG + +V +P+ Q++ F F+TF + V +L
Sbjct: 328 SSFTDEDVSNYFGNFGPVQDVRIPY----QQKRMFGFVTFLHSETVRIIL 373
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/50 (24%), Positives = 28/50 (56%)
Frame = +2
Query: 95 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 244
TD+++ ++FG +G ++ + + + R F F+ F E++ ++A G
Sbjct: 331 TDEDVSNYFGNFGPVQDVRIPYQ----QKRMFGFVTFLHSETVRIILARG 376
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 35.1 bits (77), Expect = 0.043
Identities = 18/51 (35%), Positives = 29/51 (56%)
Frame = +2
Query: 62 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 214
+++VG L T++EL D F A+G + S+ V P G+AF+ F+ P
Sbjct: 3 RVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRP-----PGYAFLDFEDP 48
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/59 (22%), Positives = 29/59 (49%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 477
+++VG L +++ E+ + F FG + V + + G+ F+ FE + D ++
Sbjct: 3 RVYVGNLDPRVTERELEDEFRAFGVVRSVWV-----ARRPPGYAFLDFEDPRDARDAIR 56
>At5g19030.3 68418.m02263 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 130
Score = 33.9 bits (74), Expect = 0.100
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +1
Query: 304 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRK 423
+FV G S +S+ ++ FSEFG + E F +KN RK
Sbjct: 60 LFVKGFSDSVSEGRLKKVFSEFGQVTN-EHYFSGSKNHRK 98
>At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing
protein low similarity to poly(A) binding protein II
from [Xenopus laevis] GI:11527140, [Mus musculus]
GI:2351846, [Bos taurus] GI:1051125; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) domain
Length = 537
Score = 33.9 bits (74), Expect = 0.100
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +2
Query: 131 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 238
G ++++ V TDP T +G AF+ F ES+ K +A
Sbjct: 469 GAVQNVIVVTDPVTRHPKGTAFVTFATKESVGKAVA 504
>At5g12440.1 68418.m01462 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 552
Score = 33.5 bits (73), Expect = 0.13
Identities = 15/50 (30%), Positives = 29/50 (58%)
Frame = +1
Query: 325 SEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 474
S D+++ +FS FGT+ +V +P+ Q++ F F++F + V +L
Sbjct: 269 STFKDEDVATYFSLFGTVQDVRIPY----QQKRMFGFVSFAHPETVKVVL 314
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/49 (24%), Positives = 26/49 (53%)
Frame = +2
Query: 98 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 244
D+++ +F +G ++ + + + R F F+ F PE++ V+A G
Sbjct: 273 DEDVATYFSLFGTVQDVRIPYQ----QKRMFGFVSFAHPETVKVVLARG 317
>At1g72800.1 68414.m08416 nuM1-related contains similarity with nuM1
GI:1279563 from [Medicago sativa]
Length = 335
Score = 33.5 bits (73), Expect = 0.13
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = +2
Query: 68 FVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE 247
F L + L +F ++GEI + V TG S G+A+I K E +K + G
Sbjct: 241 FDASLPVDDIKSALSKYFSSFGEITRVFVPPSHGTGGSLGYAYIDLK--EGAEKALELGR 298
Query: 248 H 250
H
Sbjct: 299 H 299
>At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing
protein
Length = 748
Score = 33.1 bits (72), Expect = 0.17
Identities = 21/59 (35%), Positives = 30/59 (50%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 477
++ VGGL + D++ FS GT+ VE F +TK + F +I F S N L K
Sbjct: 11 RLHVGGLGESVGRDDLLKIFSPMGTVDAVE--FVRTKG--RSFAYIDF-SPSSTNSLTK 64
>At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 451
Score = 33.1 bits (72), Expect = 0.17
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +2
Query: 83 SWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 217
S T++ LRD F GEI + +K + G+SR FA+I F+ +
Sbjct: 11 SKHVTEERLRDVFSRKGEIADVKLKR-KSDGKSRQFAYIGFRTEQ 54
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 32.7 bits (71), Expect = 0.23
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Frame = +2
Query: 47 RDDDR----KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 214
R DDR +L+VG LS T ++L F YG + +++K D +AF+ F P
Sbjct: 3 RYDDRYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD--------YAFVEFSDP 54
Query: 215 ESID 226
D
Sbjct: 55 RDAD 58
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFD 402
+++VG LSS ++ FS +G + +V+M D
Sbjct: 12 RLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD 45
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 32.7 bits (71), Expect = 0.23
Identities = 16/66 (24%), Positives = 30/66 (45%)
Frame = +1
Query: 304 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP 483
++VG + ++ FS+FG + V+M + G+ F+ FE E+ D ++
Sbjct: 4 VYVGNFDYDTRHSDLERLFSKFGRVKRVDM--------KSGYAFVYFEDERDAEDAIRRT 55
Query: 484 KRTIGG 501
T G
Sbjct: 56 DNTTFG 61
>At1g69250.1 68414.m07936 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 427
Score = 32.7 bits (71), Expect = 0.23
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Frame = +1
Query: 262 KKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFC--F 435
KK D K + IFV L ++ F +FG I E + ++ C F
Sbjct: 268 KKNDQKVIEVPGTSIFVANLPLNAMPPQLFELFKDFGPIKENGIQVRSSRGNANPVCFGF 327
Query: 436 ITFESEQVVNDLLKTPKRT 492
I+FE+ V +L+ K T
Sbjct: 328 ISFETVASVQSVLQAAKNT 346
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 32.3 bits (70), Expect = 0.30
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +2
Query: 62 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 208
+++VG L T++EL D F ++G I S+ V P G+AF+ F+
Sbjct: 3 RVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRP-----PGYAFLDFE 46
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/59 (23%), Positives = 29/59 (49%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 477
+++VG L +++ E+ + F FG I V + + G+ F+ FE + D ++
Sbjct: 3 RVYVGNLDPRVTERELEDEFRSFGVIRSVWV-----ARRPPGYAFLDFEDSRDARDAIR 56
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 32.3 bits (70), Expect = 0.30
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = +1
Query: 304 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 456
+FV L+ D+++ FS FGT++ ++ D + FI FE+++
Sbjct: 245 LFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKE 295
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 31.9 bits (69), Expect = 0.40
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Frame = +2
Query: 47 RDDDR----KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 214
R DDR +L+VG LS T ++L F YG + +++K D +AF+ F P
Sbjct: 3 RYDDRYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD--------YAFVEFGDP 54
Query: 215 ESID 226
D
Sbjct: 55 RDAD 58
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFD 402
+++VG LSS ++ FS +G + +V+M D
Sbjct: 12 RLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD 45
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 31.9 bits (69), Expect = 0.40
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +2
Query: 62 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF-KAPESIDKVMA 238
+++VG L T++EL D F A+G + ++ V P G+AF+ F +++D + A
Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRP-----PGYAFLEFDDERDALDAISA 57
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/66 (22%), Positives = 31/66 (46%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 480
+++VG L +++ E+ + F FG + V + + G+ F+ F+ E+ D +
Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWV-----ARRPPGYAFLEFDDERDALDAISA 57
Query: 481 PKRTIG 498
R G
Sbjct: 58 LDRKNG 63
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 31.9 bits (69), Expect = 0.40
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +2
Query: 62 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF-KAPESIDKVMA 238
+++VG L T++EL D F A+G + ++ V P G+AF+ F +++D + A
Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRP-----PGYAFLEFDDERDALDAISA 57
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/66 (22%), Positives = 31/66 (46%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 480
+++VG L +++ E+ + F FG + V + + G+ F+ F+ E+ D +
Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWV-----ARRPPGYAFLEFDDERDALDAISA 57
Query: 481 PKRTIG 498
R G
Sbjct: 58 LDRKNG 63
>At3g63450.1 68416.m07144 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 399
Score = 31.5 bits (68), Expect = 0.53
Identities = 11/49 (22%), Positives = 27/49 (55%)
Frame = +2
Query: 98 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 244
++++ D+F +G ++ + + + R F F+ F PE++ ++A G
Sbjct: 169 EEDVSDYFSTFGPVQDVRIPYQ----QKRMFGFVTFMYPETVKSILAKG 213
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 31.5 bits (68), Expect = 0.53
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +2
Query: 59 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 208
R +FVG +ET +L F YG ++ +++K+ G+AF+ F+
Sbjct: 2 RPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKS--------GYAFVYFE 43
Score = 27.5 bits (58), Expect = 8.7
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Frame = +2
Query: 5 GGDSQDHNSAEAPGRDDDRK-LFVGGLS-WETTDKELRDHFGAYGEIESINVKTDPNTGR 178
G + A+AP K LFV T + ++ HF YG++ ++ ++
Sbjct: 74 GERGRPRGDAKAPSNLKPTKTLFVINFDPIRTKEHDIEKHFEPYGKVTNVRIR------- 126
Query: 179 SRGFAFIVFKAPESIDKVMAA 241
R F+F+ F+ E K + A
Sbjct: 127 -RNFSFVQFETQEDATKALEA 146
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 31.5 bits (68), Expect = 0.53
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = +1
Query: 304 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 444
+ V L + +++R F +FG + ++ +P D +GF F+ F
Sbjct: 38 LLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQF 84
>At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
G3BP ras-GTPase-activating protein SH3-domain binding
protein, Mus musculus, EMBL:MMU65313
Length = 460
Score = 31.1 bits (67), Expect = 0.70
Identities = 18/70 (25%), Positives = 30/70 (42%)
Frame = +1
Query: 304 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP 483
I+V L + + ++ F FG I + K Q F F+ FE+ L+
Sbjct: 295 IYVRNLPFDSTPTQLEEVFKNFGAIKHEGIQVRSNKQQGFCFGFVEFETSSGKQSALEAS 354
Query: 484 KRTIGGKEAM 513
TIG ++A+
Sbjct: 355 PVTIGDRQAV 364
>At5g16840.1 68418.m01973 RNA recognition motif (RRM)-containing
protein predicted proteins - Arabidopsis thaliana
Length = 259
Score = 31.1 bits (67), Expect = 0.70
Identities = 15/56 (26%), Positives = 33/56 (58%)
Frame = +2
Query: 59 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 226
R + VG LS T+ ++++ F GE+ESI+++++ ++ A++ FK + +
Sbjct: 6 RSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQSNEHS------AYVTFKETQGAE 55
>At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 309
Score = 31.1 bits (67), Expect = 0.70
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Frame = +2
Query: 5 GGDSQDHNSAEAPGRDDDRKLFVGGLSWETT-DKELRDHFGAYGEIESINVKTDPNTGRS 181
GG S+ +S+ P + LFV + T ++L HF YG+I ++ ++
Sbjct: 42 GGGSRRSSSSMRPSKT----LFVINFDADNTRTRDLEKHFEPYGKIVNVRIR-------- 89
Query: 182 RGFAFIVFKAPESIDKVMAAGEH 250
R FAFI ++A E + + A +
Sbjct: 90 RNFAFIQYEAQEDATRALDASNN 112
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 31.1 bits (67), Expect = 0.70
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Frame = +2
Query: 5 GGDSQDHNSAEAPGRDDDRKLFVGGLSWETT-DKELRDHFGAYGEIESINVKTDPNTGRS 181
GG S+ +S+ P + LFV + T ++L HF YG+I ++ ++
Sbjct: 83 GGGSRRSSSSMRPSKT----LFVINFDADNTRTRDLEKHFEPYGKIVNVRIR-------- 130
Query: 182 RGFAFIVFKAPESIDKVMAAGEH 250
R FAFI ++A E + + A +
Sbjct: 131 RNFAFIQYEAQEDATRALDASNN 153
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 31.1 bits (67), Expect = 0.70
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +1
Query: 304 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 444
+ V L + +++R F +FG + ++ +P D +GF FI F
Sbjct: 39 LLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQF 85
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 30.7 bits (66), Expect = 0.93
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Frame = +2
Query: 2 GGGDSQDHNSAEAPGRDDDRKLFVGGLSWETT-DKELRDHFGAYGEIESINVKTDPNTGR 178
GG + + G + LFV + T ++L HF YG+I ++ ++
Sbjct: 77 GGAGRSGGSRRSSSGLRPSKTLFVINFDAQNTRTRDLERHFEPYGKIVNVRIR------- 129
Query: 179 SRGFAFIVFKAPESIDKVMAA 241
R FAFI ++A E + + A
Sbjct: 130 -RNFAFIQYEAQEDATRALDA 149
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 30.7 bits (66), Expect = 0.93
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Frame = +2
Query: 2 GGGDSQDHNSAEAPGRDDDRKLFVGGLSWETT-DKELRDHFGAYGEIESINVKTDPNTGR 178
GG + + G + LFV + T ++L HF YG+I ++ ++
Sbjct: 77 GGAGRSGGSRRSSSGLRPSKTLFVINFDAQNTRTRDLERHFEPYGKIVNVRIR------- 129
Query: 179 SRGFAFIVFKAPESIDKVMAA 241
R FAFI ++A E + + A
Sbjct: 130 -RNFAFIQYEAQEDATRALDA 149
>At5g02530.1 68418.m00187 RNA and export factor-binding protein,
putative BcDNA.LD24793, Drosophila melanogaster,
EMBL:AF172637
Length = 292
Score = 30.7 bits (66), Expect = 0.93
Identities = 15/65 (23%), Positives = 31/65 (47%)
Frame = +1
Query: 250 HHNNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGF 429
HH V + K+++ L +S+++I+ FSE G + + +D++ + KG
Sbjct: 92 HHQTAVVGGGSSIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYGIHYDRS-GRSKGT 150
Query: 430 CFITF 444
+ F
Sbjct: 151 AEVVF 155
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 30.7 bits (66), Expect = 0.93
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +2
Query: 59 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 208
R ++VG L + + E+ D F YG I I +K P R + F+ F+
Sbjct: 7 RSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPP---RPPCYCFVEFE 53
>At2g42240.1 68415.m05228 RNA recognition motif (RRM)-containing
protein similar to RNA-binding protein (Hermes) from
{Gallus gallus} SP|Q9W6I1, {Xenopus laevis} SP|Q9YGP5,
{Mus musculus} SP|Q9WVB0; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 124
Score = 30.7 bits (66), Expect = 0.93
Identities = 20/65 (30%), Positives = 34/65 (52%)
Frame = +2
Query: 47 RDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 226
RD+ R LFV GL + +E+ + F + E+ ++++ ++ FAF VF +S
Sbjct: 31 RDEVRTLFVAGLPEDVKPREIYNLFREFPGYETSHLRSSDG---AKPFAFAVFSDLQSAV 87
Query: 227 KVMAA 241
VM A
Sbjct: 88 AVMHA 92
>At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing
protein
Length = 90
Score = 30.7 bits (66), Expect = 0.93
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = +1
Query: 307 FVGGLSSEISDDEIRNFFSEFGTILEVEMPF 399
+VG L S+ +++++N FS+FG ++ + F
Sbjct: 11 YVGNLESDTEENDLKNAFSQFGDVIHSNVRF 41
>At5g04210.1 68418.m00409 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 193
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/46 (36%), Positives = 27/46 (58%)
Frame = +2
Query: 98 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 235
++++RDHF YGEIESI + P+ G AF+ + + +K M
Sbjct: 91 EQDIRDHFCPYGEIESIVI--FPHRGGGT-CAFLTYTTRLAAEKAM 133
>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 823
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/53 (37%), Positives = 29/53 (54%)
Frame = +2
Query: 59 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 217
R L+VG L ++EL D F +GE+ES+ + GRS +AF+ F E
Sbjct: 23 RHLWVGNLPHGILERELADRFLRFGELESLAFQ----PGRS--YAFVNFNHDE 69
>At2g33440.1 68415.m04099 splicing factor family protein similar to
Splicing factor U2AF 65 kDa subunit (U2 snRNP auxiliary
factor large subunit) {Homo sapiens} SP|P26368, {Mus
musculus} SP|P26369; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 247
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +1
Query: 301 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGF 429
KIF+GG S IS + + S FG + + NQR F
Sbjct: 41 KIFIGGFSKAISSEMLMEIVSVFGPLKAYRFVSNNDLNQRCAF 83
>At1g60200.1 68414.m06781 splicing factor PWI domain-containing
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF01480: PWI domain, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 899
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Frame = +1
Query: 304 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES-EQVVNDLLKT 480
I++G +++ + +D + + G + D T + KGF F FES E ++ +
Sbjct: 206 IYIGKIAT-VENDFMMSILEFCGHVKSCLRAEDPTTKKPKGFGFYEFESAEGILRAIRLL 264
Query: 481 PKRTIGGKEAM*SV 522
+RTI G+E + +V
Sbjct: 265 TQRTIDGQELLVNV 278
>At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing
protein RNA-binding protein LAH1, Saccharomyces
cerevisiae, PIR2:B48600; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 433
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/53 (22%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +1
Query: 322 SSEISDDEIRNFFSEFGTILEVEMPFDKTKNQ-RKGFCFITFESEQVVNDLLK 477
S ++ +++ +FFS++G + V MP +++ G + F +E+ +++K
Sbjct: 124 SYDVKREDVESFFSQYGKVNSVRMPRHVAESRIFSGVALVEFPTEEDAQNVMK 176
>At3g50670.2 68416.m05543 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 204
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +2
Query: 23 HNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSR 184
+N A G D + LFV L++E+++ +++ F +YG I+ + G R
Sbjct: 127 NNDPNATG-DPYKTLFVSRLNYESSESKIKREFESYGPIKRVGYSEHSLAGSVR 179
>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
protein
Length = 830
Score = 29.5 bits (63), Expect = 2.1
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +2
Query: 29 SAEAP-GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 205
S E P G R LFV ++ D EL F +GEI S+ +SRGF I +
Sbjct: 174 SVEHPNGEHPSRTLFVRNINSSVEDSELSALFEPFGEIRSLYTAC-----KSRGFVMISY 228
>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
protein
Length = 843
Score = 29.5 bits (63), Expect = 2.1
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +2
Query: 29 SAEAP-GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 205
S E P G R LFV ++ D EL F +GEI S+ +SRGF I +
Sbjct: 187 SVEHPNGEHPSRTLFVRNINSSVEDSELSALFEPFGEIRSLYTAC-----KSRGFVMISY 241
>At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM), PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 540
Score = 29.1 bits (62), Expect = 2.8
Identities = 10/49 (20%), Positives = 27/49 (55%)
Frame = +2
Query: 98 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 244
++++ ++F +G ++ + + + R F F+ F PE++ ++A G
Sbjct: 272 EEDVSNYFSTFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKSILAKG 316
>At2g03640.1 68415.m00324 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 422
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/80 (21%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Frame = +1
Query: 280 KAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQV 459
K +A+ IFV L + + +++ F FG I + + ++ F+ FE+ +
Sbjct: 269 KPQAQGSSIFVANLPMDATIEQLYETFKSFGAIRKDGIQVRSYPEKKNCIGFVAFENGEA 328
Query: 460 VNDLLKTPKRT---IGGKEA 510
V ++ + + + IG + A
Sbjct: 329 VKNVFQAHRESPIRIGNRRA 348
>At1g73490.1 68414.m08508 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 259
Score = 29.1 bits (62), Expect = 2.8
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Frame = +2
Query: 56 DRKLFVGGLSWETTDKELR----DHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 208
D LFV G E++ +HF + G++ I V +TG S G+AFI K
Sbjct: 116 DSALFVQGFDTSHPRHEIKTALWNHFSSCGKVYLIYVPIACSTGASVGYAFIDMK 170
>At1g45100.1 68414.m05170 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Nicotiana tabacum] GI:7673355, [Cucumis
sativus] GI:7528270; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 497
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +1
Query: 304 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 450
+FV L I +I NFF + G ++ V + ++ + G+ F+ F S
Sbjct: 249 LFVANLRDSIQISDIINFFKDVGEVVHVRL-IVNSQGKHAGWGFVEFAS 296
>At1g13730.1 68414.m01612 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 428
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/63 (25%), Positives = 30/63 (47%)
Frame = +1
Query: 304 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP 483
IFV L + + +++ F FG I + + + + F F+TF S + V +L+
Sbjct: 279 IFVANLLMDATPEQLNETFKGFGAITKDGIQVRSYRLKGNCFGFVTFASAEAVKLVLQAH 338
Query: 484 KRT 492
K +
Sbjct: 339 KES 341
>At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +2
Query: 32 AEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVK 157
A+ D+ ++++ L + T EL+D FG G++ I K
Sbjct: 271 ADCDDNCDNARIYISNLPPDVTTDELKDLFGGIGQVGRIKQK 312
>At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +2
Query: 32 AEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVK 157
A+ D+ ++++ L + T EL+D FG G++ I K
Sbjct: 271 ADCDDNCDNARIYISNLPPDVTTDELKDLFGGIGQVGRIKQK 312
>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
EMBL:D86122
Length = 915
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/63 (23%), Positives = 30/63 (47%)
Frame = +1
Query: 256 NNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCF 435
NN + + + + VG +SS + D E++ F +FG I + T + +GF
Sbjct: 203 NNSVGELNRGEIPSRTLLVGNISSNVEDYELKVLFEQFGDIQALH-----TACKNRGFIM 257
Query: 436 ITF 444
+++
Sbjct: 258 VSY 260
>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
protein KIAA0332 - Homo sapiens, EMBL:AB002330
Length = 946
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/40 (25%), Positives = 24/40 (60%)
Frame = +1
Query: 304 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRK 423
++VG LS ++ ++ + F FG I V++ + +T +++
Sbjct: 181 LYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTDEEKR 220
>At5g03480.1 68418.m00304 expressed protein ; expression supported
by MPSS
Length = 321
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +2
Query: 107 LRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 235
L HF + GEI + V TD G + AF+ + + DK +
Sbjct: 133 LEKHFDSCGEIRHVYVPTDYERGVLKSVAFLRIEGEGAEDKAL 175
>At4g08750.1 68417.m01443 RNA recognition motif (RRM)-containing
protein contains Pfam domain PF00076: RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 461
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 107 LRDHFGAYGEIESINVKTDPNTGRSRGF 190
L HF GEI + V +P+TG +GF
Sbjct: 364 LSKHFSVCGEITRVFVPRNPSTGAIKGF 391
>At1g67950.3 68414.m07762 RNA recognition motif (RRM)-containing
protein
Length = 279
Score = 28.3 bits (60), Expect = 5.0
Identities = 18/70 (25%), Positives = 34/70 (48%)
Frame = +1
Query: 247 THHNNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKG 426
T HN +D + + + + +S +S +++ FFS G I VEM +++ Q
Sbjct: 13 TQHNIL-MDSQSTVSGVKTVKISNVSLIVSKKDVKEFFSFSGDIQYVEM---RSETQESQ 68
Query: 427 FCFITFESEQ 456
++TF+ Q
Sbjct: 69 VAYVTFKDSQ 78
>At1g67950.2 68414.m07760 RNA recognition motif (RRM)-containing
protein
Length = 279
Score = 28.3 bits (60), Expect = 5.0
Identities = 18/70 (25%), Positives = 34/70 (48%)
Frame = +1
Query: 247 THHNNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKG 426
T HN +D + + + + +S +S +++ FFS G I VEM +++ Q
Sbjct: 14 TQHNIL-MDSQSTVSGVKTVKISNVSLIVSKKDVKEFFSFSGDIQYVEM---RSETQESQ 69
Query: 427 FCFITFESEQ 456
++TF+ Q
Sbjct: 70 VAYVTFKDSQ 79
>At1g67950.1 68414.m07761 RNA recognition motif (RRM)-containing
protein
Length = 278
Score = 28.3 bits (60), Expect = 5.0
Identities = 18/70 (25%), Positives = 34/70 (48%)
Frame = +1
Query: 247 THHNNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKG 426
T HN +D + + + + +S +S +++ FFS G I VEM +++ Q
Sbjct: 13 TQHNIL-MDSQSTVSGVKTVKISNVSLIVSKKDVKEFFSFSGDIQYVEM---RSETQESQ 68
Query: 427 FCFITFESEQ 456
++TF+ Q
Sbjct: 69 VAYVTFKDSQ 78
>At1g15890.1 68414.m01906 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 851
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/60 (28%), Positives = 31/60 (51%)
Frame = -2
Query: 522 HASHRLLSTNCSFGSLKQIIYNLLRFKCDETEAFSLVLCFVKGHLHF*DSSKFTEEVSDF 343
H H L S++ F S+++ I +L+F D+ + + LCF+ L D EE+ ++
Sbjct: 370 HVIHVLNSSSHEFPSMEEKILPVLKFSYDDLKDEKVKLCFLYCSLFPEDYEVRKEELIEY 429
>At4g16810.1 68417.m02538 expressed protein similar to vernalization
2 protein [Arabidopsis thaliana] GI:16945788, embryonic
flower 2 [Arabidopsis thaliana] GI:14276050,
fertilization-independent seed 2 protein [Arabidopsis
thaliana] GI:4185499
Length = 623
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 341 MKSETSSVNLELS*KWRCPLTKQR 412
M ++ SSV E++ KWRCP +R
Sbjct: 582 MSNQLSSVAKEIAGKWRCPQKNKR 605
>At2g01740.1 68415.m00103 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 559
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -2
Query: 513 HRLLSTNCSFGSLKQIIYNLLRFKCDETEAFSLVLCFV 400
H+L+++NC SLK + Y + R +F+ V+ FV
Sbjct: 29 HQLINSNCGILSLKFLAYLVSRGYTPHRSSFNSVVSFV 66
>At5g49760.1 68418.m06163 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 953
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -2
Query: 285 SLLWVYFLVVVVCSPAAMTLSIDSGALNTMKA 190
SLL + F + CS +A+T +D+ ALN +K+
Sbjct: 8 SLLLILFFFQI-CSVSALTNGLDASALNALKS 38
>At5g27640.1 68418.m03311 eukaryotic translation initiation factor 3
subunit 9 / eIF-3 eta / eIF3b (TIF3B1) nearly identical
to SP|Q9C5Z1 Eukaryotic translation initiation factor 3
subunit 9 (eIF-3 eta) (eIF3 p110) (eIF3b) {Arabidopsis
thaliana}
Length = 712
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +1
Query: 346 IRNFFSEFGTILE--VEMPFDKTKNQRKGFCFITFESEQ 456
++ +++ G I E + MP D G+CFI F + Q
Sbjct: 78 VKKIYNQLGVIKENGLWMPVDPDTKMTLGYCFIEFNTPQ 116
>At5g25780.1 68418.m03060 eukaryotic translation initiation factor 3
subunit 9, putative / eIF-3 eta, putative / eIF3b,
putative nearly identical to SP|Q9C5Z1 Eukaryotic
translation initiation factor 3 subunit 9 (eIF-3 eta)
(eIF3 p110) (eIF3b) {Arabidopsis thaliana}
Length = 714
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +1
Query: 346 IRNFFSEFGTILE--VEMPFDKTKNQRKGFCFITFESEQ 456
++ +++ G I E + MP D G+CFI F + Q
Sbjct: 79 VKKIYNQLGVIKENGLLMPVDPDTKMTLGYCFIEFNTPQ 117
>At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing
protein KIAA0332 gene, Homo sapiens, EMBL:HSAB2330
Length = 947
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/40 (25%), Positives = 25/40 (62%)
Frame = +1
Query: 304 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRK 423
++V LSS++ ++ + F FG I V++ + +T+ +++
Sbjct: 189 LYVVNLSSKVDENFLLRTFGRFGPIASVKIMWPRTEEEKR 228
>At3g21215.1 68416.m02681 RNA-binding protein, putative contains RNA
recognition motif, Pfam:PF00076; contains AT-AC splice
sites at intron 8
Length = 339
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = +1
Query: 304 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFE 447
+F+G L I+++E+R+ S ++++ + +R CFI FE
Sbjct: 235 LFIGNLGENINEEELRSLLSAQPGFKQMKI----LRQERHTVCFIEFE 278
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,632,011
Number of Sequences: 28952
Number of extensions: 275418
Number of successful extensions: 1336
Number of sequences better than 10.0: 241
Number of HSP's better than 10.0 without gapping: 972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1327
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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