Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0312
         (580 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1050 + 23949828-23949981,23950083-23950534,23951599-239516...    29   2.7  
01_01_0861 + 6710815-6713142                                           28   6.2  
09_03_0006 + 11426346-11426420,11426733-11427452                       27   8.2  
02_04_0470 - 23183925-23184743,23184929-23185153                       27   8.2  

>08_02_1050 +
          23949828-23949981,23950083-23950534,23951599-23951631,
          23952069-23952179,23953175-23953348
          Length = 307

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 61 SPAPAPRQTLRPRRRWPP 8
          SP+P+P  +  P RRWPP
Sbjct: 27 SPSPSPLLSRAPSRRWPP 44


>01_01_0861 + 6710815-6713142
          Length = 775

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -2

Query: 267 RECKPTCYRDITCTS*VI-LSCMLESETIEVTI 172
           REC+  CY D +CTS     +C+L    ++ TI
Sbjct: 363 RECEAACYSDCSCTSFAFNKTCLLWYGELQNTI 395


>09_03_0006 + 11426346-11426420,11426733-11427452
          Length = 264

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 17/32 (53%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = -1

Query: 91  RLVKGLSCPRSPAPAPRQ--TLRPRRRWPPGT 2
           RL  G  CP S AP+P Q   LR  RR PP T
Sbjct: 110 RLAVGHRCPDSSAPSPPQPGALRWHRR-PPST 140


>02_04_0470 - 23183925-23184743,23184929-23185153
          Length = 347

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 67  PRSPAPAPRQTLRPRRRWPP 8
           PR P P P+   RP RR PP
Sbjct: 261 PRPPPPPPKARRRPCRRRPP 280


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,184,697
Number of Sequences: 37544
Number of extensions: 230931
Number of successful extensions: 642
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)