Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0312
         (580 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25795| Best HMM Match : RVT_1 (HMM E-Value=0.29)                    30   1.2  
SB_2016| Best HMM Match : HEAT (HMM E-Value=8.6e-07)                   28   4.8  
SB_30049| Best HMM Match : FBA_2 (HMM E-Value=7)                       27   8.4  

>SB_25795| Best HMM Match : RVT_1 (HMM E-Value=0.29)
          Length = 384

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 253 WFTFPVFFLDYEGQLWNVYCSKQLPSTT 336
           W  +P+  +D   Q+W+ YC K+LP  T
Sbjct: 109 WERYPIPVIDESYQIWHRYCWKRLPFGT 136


>SB_2016| Best HMM Match : HEAT (HMM E-Value=8.6e-07)
          Length = 502

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -1

Query: 424 NQVQPYKKKDLFPLCDSVTAPRACSAEGLASLRVAVYCNKHSRAALR 284
           +++Q      L  LC SV+    C+    A L   ++C + S A LR
Sbjct: 136 SRLQQLASLSLTDLCQSVSGDEGCAVAETAELIALMHCLESSAATLR 182


>SB_30049| Best HMM Match : FBA_2 (HMM E-Value=7)
          Length = 282

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/29 (44%), Positives = 23/29 (79%), Gaps = 3/29 (10%)
 Frame = +2

Query: 503 IYSYNF-FFSRSIKVFDYIPSD--NKTTL 580
           I SYN+ FF+R+I++++ +PS+  N+ TL
Sbjct: 231 ILSYNYSFFARAIRIWNLLPSNVVNQVTL 259


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,399,778
Number of Sequences: 59808
Number of extensions: 265955
Number of successful extensions: 697
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)