Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0312
         (580 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g64625.1 68414.m07326 expressed protein similar to cDNA bHLH ...    28   5.2  
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ...    28   5.2  

>At1g64625.1 68414.m07326 expressed protein similar to cDNA bHLH
           transcription factor (bHLH epsilon gene) GI:32563003
          Length = 527

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 286 EGQLWNVYCSKQLPSTTRAPQLSMRAEL*HYHTKGKDL 399
           +GQ+W  +  +  P  TR   L    +L  +HTK  DL
Sbjct: 488 KGQIWAHFIVQAKPQVTRIQVLYSLVQLFQHHTKHDDL 525


>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
           (SR45) similar to arginine/serine-rich protein
           GI:6601502 from [Arabidopsis thaliana]
          Length = 414

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = -1

Query: 79  GLSCPRSPAPAPRQTLRPRRRWP 11
           GLS PR  +P PR+ L PRRR P
Sbjct: 225 GLS-PRRRSPLPRRGLSPRRRSP 246


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,004,882
Number of Sequences: 28952
Number of extensions: 187973
Number of successful extensions: 475
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)