Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0310
(673 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0717 + 23834965-23835051,23836760-23836859,23837685-238377... 60 2e-09
09_02_0152 + 5040845-5041001,5042645-5042757,5043556-5043816,504... 58 5e-09
02_04_0469 - 23178589-23178755,23179529-23179697,23179836-231799... 51 1e-06
11_01_0130 - 1079515-1079685,1079847-1079961,1080237-1080328,108... 35 0.068
12_01_0133 - 1011442-1011609,1011792-1011906,1012188-1012279,101... 33 0.16
05_01_0488 - 4070506-4072277,4072455-4072557 31 1.1
01_06_0481 - 29646245-29646371,29646474-29646556,29646672-296467... 30 1.5
10_08_0598 + 19093417-19094220 29 3.4
02_05_0794 + 31789186-31789330,31789613-31789755 29 3.4
01_06_0836 - 32321431-32321556,32321656-32321872,32321975-323235... 29 3.4
10_08_0829 - 20871810-20872011,20873226-20873359,20873480-208773... 29 4.5
07_01_1192 - 11313934-11314221,11314296-11314413,11317220-11317371 28 5.9
>06_03_0717 +
23834965-23835051,23836760-23836859,23837685-23837770,
23837867-23837958,23838659-23838773,23838847-23839029
Length = 220
Score = 59.7 bits (138), Expect = 2e-09
Identities = 29/82 (35%), Positives = 47/82 (57%)
Frame = +3
Query: 261 LKRKKRYEKQLTQIDGTLTQIEAQREALEGANTNAQVLNTMREAANAMKLAHKDIDVDKV 440
LKRK+ YE+Q+ Q+ +I Q LEGA + ++ +R A+AMK HK ++D V
Sbjct: 68 LKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASAMKAMHKATNIDDV 127
Query: 441 HDIMDDIAEQHDISREITEAIS 506
MD+I + + R+I + +S
Sbjct: 128 DKTMDEINDNMENMRQIQDLLS 149
Score = 42.3 bits (95), Expect = 3e-04
Identities = 25/54 (46%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Frame = +1
Query: 118 TTHEAIQKLRETEELLIKKQEFLEKKIDLEVQTARKH-GTKNKRAAMQLSSGRR 276
T +I KL ET E+L KK+ L KK +LEV+ A+ KNKRAA+Q +R
Sbjct: 19 TALASIDKLSETLEMLEKKENLLVKKANLEVEKAKTFTKAKNKRAAIQCLKRKR 72
>09_02_0152 + 5040845-5041001,5042645-5042757,5043556-5043816,
5043954-5044058,5044726-5044791,5044882-5044999,
5045018-5045103,5045900-5046424,5046534-5047115,
5047203-5047385,5049326-5049392,5049685-5049791,
5049977-5050076,5050228-5050313,5050394-5050485,
5050591-5050705,5050792-5050983
Length = 984
Score = 58.4 bits (135), Expect = 5e-09
Identities = 30/83 (36%), Positives = 47/83 (56%)
Frame = +3
Query: 258 ALKRKKRYEKQLTQIDGTLTQIEAQREALEGANTNAQVLNTMREAANAMKLAHKDIDVDK 437
+LKRKK YE+Q+ Q+ +I Q LE A + ++ +R A AMK K ++D
Sbjct: 828 SLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTGAAAMKAMQKATNIDD 887
Query: 438 VHDIMDDIAEQHDISREITEAIS 506
V MD+I EQ + ++I +A+S
Sbjct: 888 VDKTMDEINEQTENMKQIQDALS 910
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/43 (46%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Frame = +1
Query: 133 IQKLRETEELLIKKQEFLEKKIDLEVQTARKHG-TKNKRAAMQ 258
+ KL ET ++L KK++ LEKK E++ A++ KNKRAA+Q
Sbjct: 785 LDKLNETLDMLEKKEKVLEKKAAAELERAKEFSKAKNKRAAIQ 827
>02_04_0469 -
23178589-23178755,23179529-23179697,23179836-23179919,
23180495-23180647,23180798-23180950,23182488-23182589
Length = 275
Score = 50.8 bits (116), Expect = 1e-06
Identities = 27/84 (32%), Positives = 44/84 (52%)
Frame = +3
Query: 258 ALKRKKRYEKQLTQIDGTLTQIEAQREALEGANTNAQVLNTMREAANAMKLAHKDIDVDK 437
ALK+KK E+ L Q+D +E Q +E A+ V ++++ A+K +I++D
Sbjct: 61 ALKKKKAQEELLKQVDTWQMNVEQQLSDIELASKQKAVFDSLKAGNAALKSIQNEINIDD 120
Query: 438 VHDIMDDIAEQHDISREITEAISK 509
V +MDD AE EI A+ +
Sbjct: 121 VQKLMDDTAEAKAYQDEINAALGE 144
>11_01_0130 -
1079515-1079685,1079847-1079961,1080237-1080328,
1080435-1080520,1080957-1081056,1082180-1082210,
1082416-1082471
Length = 216
Score = 34.7 bits (76), Expect = 0.068
Identities = 19/38 (50%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Frame = +1
Query: 148 ETEELLIKKQEFLEKKIDLEVQTARKH-GTKNKRAAMQ 258
ET E+L KK+ FL+KK EV+ A+ + KNK AA+Q
Sbjct: 29 ETLEMLEKKECFLQKKASAEVEKAKDYTKAKNKSAAIQ 66
>12_01_0133 -
1011442-1011609,1011792-1011906,1012188-1012279,
1012384-1012469,1012989-1013088,1014139-1014333
Length = 251
Score = 33.5 bits (73), Expect = 0.16
Identities = 18/38 (47%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Frame = +1
Query: 148 ETEELLIKKQEFLEKKIDLEVQTARKH-GTKNKRAAMQ 258
+T E+L KK+ FL+KK EV+ A+ + KNK AA+Q
Sbjct: 65 QTLEMLEKKECFLQKKASAEVERAKDYTKAKNKSAAIQ 102
>05_01_0488 - 4070506-4072277,4072455-4072557
Length = 624
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/74 (27%), Positives = 43/74 (58%), Gaps = 9/74 (12%)
Frame = +3
Query: 288 QLTQIDGTLTQIEAQREALEGAN-TNAQVLNTMREA-ANAMK-----LAHKDIDVDKVHD 446
+ + + L ++++++EALE N ++ ++E+ +A K LAH+D ++DK
Sbjct: 229 ETSSLQKDLDEVKSEKEALEAVVLVNKDEIDRLKESMVSAAKQFEVELAHRDTEIDKCKQ 288
Query: 447 IMDDIAEQ--HDIS 482
++ ++E+ HDIS
Sbjct: 289 ELEVLSEKYLHDIS 302
>01_06_0481 - 29646245-29646371,29646474-29646556,29646672-29646752,
29646843-29646899,29647007-29647094,29647304-29647374,
29647457-29647585,29647662-29648051,29648332-29648517,
29648612-29648692,29648787-29648879,29648966-29649086,
29649200-29649409,29649560-29649727,29649898-29650065,
29650144-29650311,29650453-29650620,29650738-29650905,
29651023-29651190,29651567-29651734,29652391-29652558,
29652645-29652812,29655720-29655887,29656069-29656236,
29656391-29656558,29656670-29656837,29657525-29657664,
29658033-29658221,29658243-29658315,29658379-29658452,
29658535-29658654,29658718-29658738,29658794-29658999,
29659094-29659271,29660066-29660126,29660232-29660341,
29660427-29660558,29661091-29661258,29661339-29661465,
29661794-29661831,29663321-29663422,29663505-29663562,
29663659-29663760,29663844-29663990,29664098-29664234,
29664313-29664462,29664561-29664720,29665820-29665878,
29666025-29666181,29666288-29666433,29666523-29666666,
29667242-29667376
Length = 2344
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 261 LKRKKRYEKQLTQIDGTLTQIEAQREALEGANTNAQVLN-TMREAANA 401
LKR K++ + T+TQ++ + LEG +TN + N +R+ A A
Sbjct: 1817 LKRNDDLIKKIEESSKTITQLQETLQRLEGKSTNLEAENQVLRQQATA 1864
>10_08_0598 + 19093417-19094220
Length = 267
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/57 (31%), Positives = 31/57 (54%)
Frame = +3
Query: 255 AALKRKKRYEKQLTQIDGTLTQIEAQREALEGANTNAQVLNTMREAANAMKLAHKDI 425
AAL+ ++R EK+L ++ G + Q A R A T V + + +AA A+ A + +
Sbjct: 128 AALRARRRTEKELCRLAGAMRQ-AASRTPAADATTGDGVGDAVADAAAAIAAASEAV 183
>02_05_0794 + 31789186-31789330,31789613-31789755
Length = 95
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +3
Query: 321 IEAQREALEGANTNAQVLNTMREAANAMKLAHKDIDVDKVH 443
+ + AL+ + A+ L ++R +NA LA + +D DK+H
Sbjct: 1 MSVETAALQLSGEKARALTSIRRYSNAPILAAQRLDTDKIH 41
>01_06_0836 -
32321431-32321556,32321656-32321872,32321975-32323590,
32323670-32323753,32323834-32324104,32324294-32324547,
32324709-32324918,32325839-32326024
Length = 987
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/46 (36%), Positives = 31/46 (67%)
Frame = +3
Query: 255 AALKRKKRYEKQLTQIDGTLTQIEAQREALEGANTNAQVLNTMREA 392
A L+R++R E++L++I GT+ + QRE L+ ++L++ REA
Sbjct: 676 ATLERERR-EQELSEIKGTIEALNNQREKLQ---EQRKLLHSDREA 717
>10_08_0829 - 20871810-20872011,20873226-20873359,20873480-20877313,
20878057-20878177,20878414-20878451,20879096-20879218,
20879308-20879505,20880270-20880356
Length = 1578
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = +1
Query: 127 EAIQKLRETEELLIKKQEFLEKKIDLEVQTARKHGTKNKRAAMQ 258
+ I L+E E L ++ + +EK++DL+ + T NK+ ++Q
Sbjct: 1282 QKIYSLQEENEDLTRRNQLMEKELDLKTSQNKDENT-NKQVSLQ 1324
>07_01_1192 - 11313934-11314221,11314296-11314413,11317220-11317371
Length = 185
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 425 NVFVCELHGISCLAHSVQY 369
N+ CELH SCL H++Q+
Sbjct: 163 NLPACELHHFSCLLHTMQH 181
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,845,725
Number of Sequences: 37544
Number of extensions: 312632
Number of successful extensions: 970
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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