Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0310
         (673 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18027| Best HMM Match : No HMM Matches (HMM E-Value=.)             115   4e-26
SB_55696| Best HMM Match : SNF7 (HMM E-Value=0)                       108   5e-24
SB_55695| Best HMM Match : SNF7 (HMM E-Value=0)                       108   5e-24
SB_40770| Best HMM Match : No HMM Matches (HMM E-Value=.)              49   3e-06
SB_31531| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   1e-04
SB_59712| Best HMM Match : SAP (HMM E-Value=3e-13)                     33   0.21 
SB_35175| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_35902| Best HMM Match : DUF567 (HMM E-Value=9.7)                    30   1.5  
SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075)               29   3.4  
SB_52524| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_48886| Best HMM Match : 4F5 (HMM E-Value=0.037)                     29   4.5  
SB_27687| Best HMM Match : zf-B_box (HMM E-Value=6.7e-10)              28   6.0  
SB_39021| Best HMM Match : M (HMM E-Value=5.3e-06)                     28   6.0  
SB_33651| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_35430| Best HMM Match : Vicilin_N (HMM E-Value=0.43)                28   7.9  

>SB_18027| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 218

 Score =  115 bits (276), Expect = 4e-26
 Identities = 56/84 (66%), Positives = 67/84 (79%)
 Frame = +3

Query: 258 ALKRKKRYEKQLTQIDGTLTQIEAQREALEGANTNAQVLNTMREAANAMKLAHKDIDVDK 437
           ALKRKKR EKQL QIDGTL+ IE QREALEGANTN +VL  M  AA A+K AH+ +DVD 
Sbjct: 64  ALKRKKRLEKQLNQIDGTLSTIEFQREALEGANTNTEVLKNMSYAAKALKAAHQQLDVDD 123

Query: 438 VHDIMDDIAEQHDISREITEAISK 509
           VHD+MDDI EQ +++ EI+ AIS+
Sbjct: 124 VHDMMDDIQEQTELADEISRAISE 147



 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 31/47 (65%), Positives = 39/47 (82%)
 Frame = +1

Query: 115 PTTHEAIQKLRETEELLIKKQEFLEKKIDLEVQTARKHGTKNKRAAM 255
           PTT EAIQKLR TEELL KK +FLEKKI+ E+Q A+++ +KNKR A+
Sbjct: 16  PTTQEAIQKLRSTEELLQKKSDFLEKKIENELQIAKQNASKNKRTAL 62


>SB_55696| Best HMM Match : SNF7 (HMM E-Value=0)
          Length = 225

 Score =  108 bits (259), Expect = 5e-24
 Identities = 50/83 (60%), Positives = 67/83 (80%)
 Frame = +3

Query: 258 ALKRKKRYEKQLTQIDGTLTQIEAQREALEGANTNAQVLNTMREAANAMKLAHKDIDVDK 437
           ALKRKKR EKQL+QIDGTL+ IE QR+ALE ++TN +V+ +M  AANA+K  HK +D+D 
Sbjct: 75  ALKRKKRLEKQLSQIDGTLSTIEFQRDALENSSTNTEVVKSMSFAANALKEVHKTLDIDD 134

Query: 438 VHDIMDDIAEQHDISREITEAIS 506
           VHD+MDD+ EQ  +S EI++AI+
Sbjct: 135 VHDVMDDVQEQAQLSDEISQAIN 157



 Score = 58.0 bits (134), Expect = 6e-09
 Identities = 27/46 (58%), Positives = 37/46 (80%)
 Frame = +1

Query: 121 THEAIQKLRETEELLIKKQEFLEKKIDLEVQTARKHGTKNKRAAMQ 258
           T +AI KLRETE+LL KKQE+LE++I++E  TA+ +  KNKR A+Q
Sbjct: 29  TQQAIWKLRETEKLLEKKQEYLEQRIEIETNTAKANVKKNKRIALQ 74


>SB_55695| Best HMM Match : SNF7 (HMM E-Value=0)
          Length = 225

 Score =  108 bits (259), Expect = 5e-24
 Identities = 50/83 (60%), Positives = 67/83 (80%)
 Frame = +3

Query: 258 ALKRKKRYEKQLTQIDGTLTQIEAQREALEGANTNAQVLNTMREAANAMKLAHKDIDVDK 437
           ALKRKKR EKQL+QIDGTL+ IE QR+ALE ++TN +V+ +M  AANA+K  HK +D+D 
Sbjct: 75  ALKRKKRLEKQLSQIDGTLSTIEFQRDALENSSTNTEVVKSMSFAANALKEVHKTLDIDD 134

Query: 438 VHDIMDDIAEQHDISREITEAIS 506
           VHD+MDD+ EQ  +S EI++AI+
Sbjct: 135 VHDVMDDVQEQAQLSDEISQAIN 157



 Score = 58.0 bits (134), Expect = 6e-09
 Identities = 27/46 (58%), Positives = 37/46 (80%)
 Frame = +1

Query: 121 THEAIQKLRETEELLIKKQEFLEKKIDLEVQTARKHGTKNKRAAMQ 258
           T +AI KLRETE+LL KKQE+LE++I++E  TA+ +  KNKR A+Q
Sbjct: 29  TQQAIWKLRETEKLLEKKQEYLEQRIEIETNTAKANVKKNKRIALQ 74


>SB_40770| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 381

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 28/113 (24%), Positives = 60/113 (53%), Gaps = 4/113 (3%)
 Frame = +3

Query: 180 VFGKEDRFRSTDSQETWH*EQKSCHAALKRKKRYEKQLTQIDGTLTQIEAQREALEGANT 359
           ++G  +  R  D+Q     ++    A LK+K+ Y+K L +  G+L  +E     ++ + T
Sbjct: 164 LWGGNESDRILDNQNFVLTQELQALAILKKKESYQKSLDRTTGSLLTLEELLHRIQESET 223

Query: 360 NAQVLNTMREAANAMKLAHKDI---DVDKV-HDIMDDIAEQHDISREITEAIS 506
           +  ++ T++  ++A++   + +   DVDKV  D+   + +  DI + +T+ IS
Sbjct: 224 DKMIVETLKSGSSALRAIQEGMNASDVDKVLMDVEGTLEDAEDIQQSLTQVIS 276


>SB_31531| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 287

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
 Frame = +3

Query: 261 LKRKKRYEKQLTQ-IDGTLTQIEAQREALEGANTNAQVLNTMREAANAMKLAHKDIDVDK 437
           L +KKRY++QL Q  D  L  +E   + +E A    +V+  ++     +   H+ + ++ 
Sbjct: 140 LLKKKRYQEQLLQRTDNQLDNLEKLVQEIEFAQVQIKVVEGLKTGNECLNQLHEMMSIED 199

Query: 438 VHDIMDDIAEQHDISREITEAIS 506
           V  IMD+  E  +  +EI + +S
Sbjct: 200 VERIMDETKEAVEYQKEIDDLLS 222


>SB_59712| Best HMM Match : SAP (HMM E-Value=3e-13)
          Length = 1072

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
 Frame = +1

Query: 118  TTHEAIQKLRETEELLIKKQEFLEKKIDLEVQTARKHGTKNKRAAMQLSSGRRDTRSNLL 297
            TT +A  + RE E+  I++Q  L K+ + + +  ++   + +R   Q    R +TR    
Sbjct: 972  TTEQAEARFREKEDRRIQRQAELAKEEEEKKEKEQEREKERERLREQREKEREETRMRAR 1031

Query: 298  K*MGPSLRLRPKGK-R*KVPI 357
               G   R  P+G+ R K P+
Sbjct: 1032 DRSGDRARSPPRGRARSKSPV 1052


>SB_35175| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 371

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/46 (34%), Positives = 28/46 (60%)
 Frame = +1

Query: 163 LIKKQEFLEKKIDLEVQTARKHGTKNKRAAMQLSSGRRDTRSNLLK 300
           L+K+Q++LE+K D +++  +K   K K+   QL SG  D +  + K
Sbjct: 65  LLKRQKYLEEKKDRKLK--KKEKQKEKKLKRQLESGDTDPQGPIKK 108


>SB_35902| Best HMM Match : DUF567 (HMM E-Value=9.7)
          Length = 205

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -3

Query: 248 ALLFLV-PCFLAVCTSKSIFFSKNSCFLISNSSVSRSFWIASC 123
           +L+F V PCF     S S+ F   SCF  +  S S  F + SC
Sbjct: 99  SLVFQVRPCFRFARVSGSLVFQVRSCFRFARVSGSLVFQVRSC 141



 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -3

Query: 230 PCFLAVCTSKSIFFSKNSCFLISNSSVSRSFWIASC 123
           PCF     S S+ F   SCF  +  S S  F + SC
Sbjct: 157 PCFRFARVSGSLVFQVRSCFRFARVSGSLVFQVRSC 192


>SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075)
          Length = 762

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 25/126 (19%), Positives = 52/126 (41%), Gaps = 4/126 (3%)
 Frame = +3

Query: 165 DQEARVFGKEDRFRSTDSQETWH*EQKSCHAALKRKKRYEKQLTQIDGTLTQ--IEAQRE 338
           + +  + GKE         +T   E      ALK K++ EK LT++   L +  +  + E
Sbjct: 146 EAQGLLLGKEALIADLSEVQTRQAEVNQLKDALKEKRKIEKDLTEMSQELGREVVRLKDE 205

Query: 339 ALEGANTNAQVLNTMREAANAMKLAHKDID--VDKVHDIMDDIAEQHDISREITEAISKM 512
             + A+     +    E  + + L  ++++  V  + ++   +AE    +    E IS +
Sbjct: 206 LGKQASNELSFIAKTTELEDQLVLLKEELNSRVSSLENVSKQLAELQSSALTKDEEISSL 265

Query: 513 WPSLMI 530
              L +
Sbjct: 266 TKRLQV 271


>SB_52524| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 481

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +3

Query: 372 LNTMREAANAMKLAHKDIDVDKVHDIMDDIAE-QHDISREITEAISKMWPSL 524
           ++ M   AN   L H D+DV K   I   I + +HD S+    AI + WPS+
Sbjct: 153 VDMMDRCANTDFLLHYDVDVIKSDAIPSSIEKAEHDTSQFFGSAIVE-WPSV 203


>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6406

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/72 (23%), Positives = 33/72 (45%)
 Frame = +3

Query: 297  QIDGTLTQIEAQREALEGANTNAQVLNTMREAANAMKLAHKDIDVDKVHDIMDDIAEQHD 476
            Q+ G    +E   +  E      + ++T+ + A+  KL+    DV+ +   MDD+ E   
Sbjct: 4053 QVQGLEAAVEQMGKLQESLKNTDEAISTVEKKAD--KLSPVGTDVETIEQQMDDLKELQK 4110

Query: 477  ISREITEAISKM 512
               +I E I+ +
Sbjct: 4111 EVEDIDELIADL 4122


>SB_48886| Best HMM Match : 4F5 (HMM E-Value=0.037)
          Length = 476

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 381 MREAANAMKLAHKDIDVDKVHDIMDDIAE-QHDISREITEAISKMWPSL 524
           M   AN   L H D+DV K   I   I + +HD S+    AI + WPS+
Sbjct: 2   MDRCANTDFLLHYDVDVIKSDAIPSSIEKAEHDTSQFFGSAIVE-WPSV 49


>SB_27687| Best HMM Match : zf-B_box (HMM E-Value=6.7e-10)
          Length = 237

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
 Frame = +1

Query: 145 RETEELLIKKQEFLEKKIDLE-----VQTARKHGTKNKRAAMQLSSGRRDTRSNLLK*MG 309
           RE EE+L + ++   K  D+E     V+ A++H  +NKRAA +      D +   L+ M 
Sbjct: 49  REKEEILERAKKVTSKLTDIEQAMALVEKAQQHLDENKRAARRDLDQLIDKQIGALEKMR 108

Query: 310 PSLR 321
             LR
Sbjct: 109 SDLR 112


>SB_39021| Best HMM Match : M (HMM E-Value=5.3e-06)
          Length = 1691

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 22/71 (30%), Positives = 36/71 (50%)
 Frame = +1

Query: 127 EAIQKLRETEELLIKKQEFLEKKIDLEVQTARKHGTKNKRAAMQLSSGRRDTRSNLLK*M 306
           E + +L  + +    K + LEKK     Q +RK  TKNK    +L+S ++   S   K +
Sbjct: 418 ELMSELENSNKEHRDKNKRLEKKNQELTQNSRKLETKNKLLLEELNSLKK-KNSVSSKDV 476

Query: 307 GPSLRLRPKGK 339
           G    +RP+G+
Sbjct: 477 GMRKGVRPRGQ 487


>SB_33651| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +3

Query: 312 LTQIEAQREALEGANTNAQVLNTMREAANAMKLAHKDI-DVDKVHDIMDDIAEQHDISRE 488
           LT+I    + L   + N+Q L  + +++  +   HK+  ++ ++H    ++   H  S+E
Sbjct: 117 LTRIHKNSQELTRIHKNSQELTRIHKSSQELTRIHKNSQELTRIHKNSQELTRIHKNSQE 176

Query: 489 IT 494
           +T
Sbjct: 177 LT 178


>SB_35430| Best HMM Match : Vicilin_N (HMM E-Value=0.43)
          Length = 238

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = +1

Query: 124 HEAIQKLRETEELLIKKQEFLEK--KIDLEVQTARKHGTKNKRAAMQ 258
           HEA QKLR+    +  K+EF+++  K D E +  +K  T+  ++  Q
Sbjct: 37  HEAQQKLRDLTINIKLKEEFIKELVKSDKEAKEMKKRYTEKTKSMRQ 83


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,220,564
Number of Sequences: 59808
Number of extensions: 353790
Number of successful extensions: 1057
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)