Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0310
(673 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U29488-7|AAA68771.1| 221|Caenorhabditis elegans Hypothetical pr... 105 3e-23
U64857-10|AAC25860.1| 265|Caenorhabditis elegans Hypothetical p... 94 7e-20
U23510-6|AAC46784.2| 236|Caenorhabditis elegans Hypothetical pr... 89 2e-18
AF016448-6|AAB65951.1| 217|Caenorhabditis elegans Hypothetical ... 56 3e-08
Z68338-2|CAA92759.1| 411|Caenorhabditis elegans Hypothetical pr... 50 2e-06
AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein. 29 3.0
AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor o... 29 3.0
Z48809-1|CAA88745.1| 1299|Caenorhabditis elegans Hypothetical pr... 28 5.3
AF016414-5|AAG24020.1| 585|Caenorhabditis elegans Hypothetical ... 28 5.3
AC006605-6|AAK85446.2| 495|Caenorhabditis elegans Clk-2 upstrea... 28 5.3
U61953-10|AAK82911.1| 613|Caenorhabditis elegans Hypothetical p... 28 6.9
U61953-9|AAK82910.1| 748|Caenorhabditis elegans Hypothetical pr... 28 6.9
U61953-8|AAC48078.1| 746|Caenorhabditis elegans Hypothetical pr... 28 6.9
Z68880-4|CAA93093.1| 544|Caenorhabditis elegans Hypothetical pr... 27 9.2
AF016665-4|AAC71180.1| 347|Caenorhabditis elegans Nuclear hormo... 27 9.2
AC087794-8|AAG53698.1| 214|Caenorhabditis elegans Hypothetical ... 27 9.2
AC024792-6|AAF60686.2| 901|Caenorhabditis elegans Hypothetical ... 27 9.2
>U29488-7|AAA68771.1| 221|Caenorhabditis elegans Hypothetical
protein C56C10.3 protein.
Length = 221
Score = 105 bits (252), Expect = 3e-23
Identities = 48/82 (58%), Positives = 64/82 (78%)
Frame = +3
Query: 261 LKRKKRYEKQLTQIDGTLTQIEAQREALEGANTNAQVLNTMREAANAMKLAHKDIDVDKV 440
L RK+ +EKQL IDG L+ I QREALE A+TNA+VLN M A+ A+K AH ++D+D+V
Sbjct: 66 LNRKRNFEKQLAHIDGVLSTIGYQREALENASTNAEVLNVMGTASKALKAAHNNMDIDQV 125
Query: 441 HDIMDDIAEQHDISREITEAIS 506
HD+M+DIAEQ +++ EI EAIS
Sbjct: 126 HDLMEDIAEQQEVANEIAEAIS 147
Score = 68.9 bits (161), Expect = 3e-12
Identities = 35/59 (59%), Positives = 43/59 (72%)
Frame = +1
Query: 118 TTHEAIQKLRETEELLIKKQEFLEKKIDLEVQTARKHGTKNKRAAMQLSSGRRDTRSNL 294
T E+IQKLRETEE+L KKQEFLEKK+ E Q A K+GTKNKR A+Q + +R+ L
Sbjct: 18 TPQESIQKLRETEEMLEKKQEFLEKKVIDEKQNAVKYGTKNKRMALQCLNRKRNFEKQL 76
>U64857-10|AAC25860.1| 265|Caenorhabditis elegans Hypothetical
protein C37C3.3 protein.
Length = 265
Score = 94.3 bits (224), Expect = 7e-20
Identities = 43/82 (52%), Positives = 61/82 (74%)
Frame = +3
Query: 261 LKRKKRYEKQLTQIDGTLTQIEAQREALEGANTNAQVLNTMREAANAMKLAHKDIDVDKV 440
L RKK +EKQL IDG L +E QRE LE A+TNA+VL M+ A++A+K H ++D D+V
Sbjct: 115 LSRKKAFEKQLIHIDGVLATLEHQRETLENASTNAEVLTVMKLASDALKAVHNNMDSDQV 174
Query: 441 HDIMDDIAEQHDISREITEAIS 506
D+MD+I EQ ++++EI +AIS
Sbjct: 175 RDMMDNIDEQREVAKEIADAIS 196
Score = 66.9 bits (156), Expect = 1e-11
Identities = 35/61 (57%), Positives = 44/61 (72%), Gaps = 1/61 (1%)
Frame = +1
Query: 118 TTHEAIQKLRETEELLIKKQEFLEKKI-DLEVQTARKHGTKNKRAAMQLSSGRRDTRSNL 294
T E+IQKLRETE++L KKQEFLEKKI D+ Q A K+GTKNKR A+Q S ++ L
Sbjct: 66 TPQESIQKLRETEDILEKKQEFLEKKIDDVRKQNAVKYGTKNKRMALQCLSRKKAFEKQL 125
Query: 295 L 297
+
Sbjct: 126 I 126
>U23510-6|AAC46784.2| 236|Caenorhabditis elegans Hypothetical
protein R12C12.5 protein.
Length = 236
Score = 89.4 bits (212), Expect = 2e-18
Identities = 40/89 (44%), Positives = 63/89 (70%)
Frame = +3
Query: 240 QKSCHAALKRKKRYEKQLTQIDGTLTQIEAQREALEGANTNAQVLNTMREAANAMKLAHK 419
+K AAL++KK YE++L++IDG LT++EAQR ALE + +V++ + + +K H
Sbjct: 76 KKMALAALRKKKHYEQELSRIDGVLTKLEAQRTALENVGMHNEVIDVLGKTTETLKKEHA 135
Query: 420 DIDVDKVHDIMDDIAEQHDISREITEAIS 506
+D+DKVHD+MD+IA+ +S E+ EAIS
Sbjct: 136 KMDIDKVHDLMDEIADGLAMSEELNEAIS 164
Score = 54.4 bits (125), Expect = 7e-08
Identities = 25/47 (53%), Positives = 35/47 (74%)
Frame = +1
Query: 115 PTTHEAIQKLRETEELLIKKQEFLEKKIDLEVQTARKHGTKNKRAAM 255
PT EAI LR+ EELLIKKQE+ E +I+ EV++A+K+ NK+ A+
Sbjct: 34 PTADEAIGNLRDAEELLIKKQEYFELRIEQEVESAKKYMKTNKKMAL 80
>AF016448-6|AAB65951.1| 217|Caenorhabditis elegans Hypothetical
protein F41E6.9 protein.
Length = 217
Score = 55.6 bits (128), Expect = 3e-08
Identities = 23/85 (27%), Positives = 48/85 (56%)
Frame = +3
Query: 261 LKRKKRYEKQLTQIDGTLTQIEAQREALEGANTNAQVLNTMREAANAMKLAHKDIDVDKV 440
LK+K+ YE Q Q+D ++ A++G N + M++ M+ +K +++D++
Sbjct: 68 LKQKRMYENQKGQLDQQAFNMDQSNFAIQGMKDNQVTVAAMKDGLKTMQKEYKKMNIDQI 127
Query: 441 HDIMDDIAEQHDISREITEAISKMW 515
D+ D + + D++ EI EA+S+ +
Sbjct: 128 EDLQDQMEDMLDMNNEIQEAMSRQY 152
>Z68338-2|CAA92759.1| 411|Caenorhabditis elegans Hypothetical
protein T24B8.2 protein.
Length = 411
Score = 50.0 bits (114), Expect = 2e-06
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Frame = +3
Query: 261 LKRKKRYEKQLTQIDGTLTQIEAQREALEGANTNAQVLNTMREAANAMK--LAHKDIDVD 434
L+++KR EK + D ++ + A N VL + A K LA + + D
Sbjct: 262 LRQRKRAEKDIADKDVQYQKLLTMLHQISSAKNNKDVLQAYKSGTAAFKATLARQGLSPD 321
Query: 435 KVHDIMDDIAEQHDISREITEAIS 506
K+H+ MDD+ D +EI EAIS
Sbjct: 322 KIHETMDDVVNSMDEYKEIEEAIS 345
>AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein.
Length = 1475
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +3
Query: 267 RKKRYEKQLTQIDGTLTQIEAQREALEGANTNAQVLNTMREAANAMK 407
R KR QLT +D +++ R +EG+ +AQ + + A MK
Sbjct: 589 RPKREPNQLTSMDMMSAELDKSRHTMEGSMRDAQTSSFLDAARVRMK 635
>AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor of
pal-1 protein 3,isoform a protein.
Length = 1475
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +3
Query: 267 RKKRYEKQLTQIDGTLTQIEAQREALEGANTNAQVLNTMREAANAMK 407
R KR QLT +D +++ R +EG+ +AQ + + A MK
Sbjct: 589 RPKREPNQLTSMDMMSAELDKSRHTMEGSMRDAQTSSFLDAARVRMK 635
>Z48809-1|CAA88745.1| 1299|Caenorhabditis elegans Hypothetical
protein T01E8.3 protein.
Length = 1299
Score = 28.3 bits (60), Expect = 5.3
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -1
Query: 100 FCHRIFSRENSFWKP 56
FC +FSRENS W P
Sbjct: 280 FCDFLFSRENSLWDP 294
>AF016414-5|AAG24020.1| 585|Caenorhabditis elegans Hypothetical
protein D1065.1 protein.
Length = 585
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -3
Query: 473 VLFSNIIHDIVYFVHINVFVCELHGISCLAHSVQYLGIGIGT 348
V++ NII+ I+YF+H + LH L + G G GT
Sbjct: 108 VIYPNIINSIIYFLHRRGRIASLH--RWLLEEPVFNGEGAGT 147
>AC006605-6|AAK85446.2| 495|Caenorhabditis elegans Clk-2 upstream,
human gene xe7related protein 7 protein.
Length = 495
Score = 28.3 bits (60), Expect = 5.3
Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = +1
Query: 136 QKLR-ETEELLIKKQEFLEKKIDLEVQTARKHGTKNKR 246
++LR E EEL IK+QE L+ K +L+ + R+ + KR
Sbjct: 284 ERLRQEEEELNIKRQEELKVKQELDDKDRRREDRERKR 321
>U61953-10|AAK82911.1| 613|Caenorhabditis elegans Hypothetical
protein R08C7.10c protein.
Length = 613
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -3
Query: 248 ALLFLVPCFLAVCTSKSIFFSKNSCFLISNSS 153
++L L CF + S S+F KN FLIS+ S
Sbjct: 428 SILILNRCF-RILESSSVFHKKNQAFLISHRS 458
>U61953-9|AAK82910.1| 748|Caenorhabditis elegans Hypothetical
protein R08C7.10b protein.
Length = 748
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -3
Query: 248 ALLFLVPCFLAVCTSKSIFFSKNSCFLISNSS 153
++L L CF + S S+F KN FLIS+ S
Sbjct: 430 SILILNRCF-RILESSSVFHKKNQAFLISHRS 460
>U61953-8|AAC48078.1| 746|Caenorhabditis elegans Hypothetical
protein R08C7.10a protein.
Length = 746
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -3
Query: 248 ALLFLVPCFLAVCTSKSIFFSKNSCFLISNSS 153
++L L CF + S S+F KN FLIS+ S
Sbjct: 428 SILILNRCF-RILESSSVFHKKNQAFLISHRS 458
>Z68880-4|CAA93093.1| 544|Caenorhabditis elegans Hypothetical
protein T14G10.7 protein.
Length = 544
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 115 PTTHEAIQKLRETEELLIKKQEFLEKKIDLEVQTARKHG 231
PT I+ ++E L E L KK+D ++QT+ +HG
Sbjct: 307 PTRGFLIKDVQERWALTHSAMEELVKKVDSQLQTSLQHG 345
>AF016665-4|AAC71180.1| 347|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 75 protein.
Length = 347
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = -3
Query: 500 RLGDLTRDVVLFSNIIHDIVYFVHINV 420
RLG++T +V +NI HD+V +H+ V
Sbjct: 318 RLGNITLQIVTVTNIYHDLV-CLHLKV 343
>AC087794-8|AAG53698.1| 214|Caenorhabditis elegans Hypothetical
protein Y32G9A.10 protein.
Length = 214
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/49 (26%), Positives = 27/49 (55%)
Frame = +3
Query: 369 VLNTMREAANAMKLAHKDIDVDKVHDIMDDIAEQHDISREITEAISKMW 515
++N ++E +++ H+ + ++VH M D+ I R +TE S+ W
Sbjct: 5 MINILKET---LEILHRGMKEEEVHQTMSDVDVTIYIYRSLTELRSEGW 50
>AC024792-6|AAF60686.2| 901|Caenorhabditis elegans Hypothetical
protein Y48G1A.1 protein.
Length = 901
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = -3
Query: 143 SFWIASCVVGPFSSFLPPNIFPRKLILETTYSFLG 39
SF+ C+ F SF +FPRKLI E F G
Sbjct: 64 SFFAKLCISFQFHSF-EDTVFPRKLIFERFSVFCG 97
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,145,370
Number of Sequences: 27780
Number of extensions: 266583
Number of successful extensions: 964
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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