Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0310
         (673 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g19830.1 68415.m02319 SNF7 family protein contains Pfam domai...    61   6e-10
At4g29160.2 68417.m04173 SNF7 family protein contains Pfam domai...    59   2e-09
At4g29160.1 68417.m04172 SNF7 family protein contains Pfam domai...    59   2e-09
At5g09260.1 68418.m01069 SNF7-related contains similarity to nuc...    50   1e-06
At5g63880.1 68418.m08020 SNF7 family protein contains Pfam domai...    46   2e-05
At3g53180.1 68416.m05860 glutamine synthetase, putative similar ...    29   2.8  
At5g27750.1 68418.m03328 F-box family protein contains F-box dom...    29   3.7  
At1g22260.1 68414.m02782 expressed protein                             28   4.9  
At2g46880.1 68415.m05853 calcineurin-like phosphoesterase family...    28   6.5  
At5g46500.1 68418.m05726 expressed protein                             27   8.6  
At4g07520.1 68417.m01174 hypothetical protein contains Pfam prof...    27   8.6  
At3g05070.1 68416.m00550 expressed protein                             27   8.6  
At1g22275.1 68414.m02784 expressed protein                             27   8.6  
At1g21270.1 68414.m02658 wall-associated kinase 2 (WAK2) identic...    27   8.6  

>At2g19830.1 68415.m02319 SNF7 family protein contains Pfam domain,
           PF03357: SNF7 family
          Length = 213

 Score = 61.3 bits (142), Expect = 6e-10
 Identities = 31/82 (37%), Positives = 48/82 (58%)
 Frame = +3

Query: 261 LKRKKRYEKQLTQIDGTLTQIEAQREALEGANTNAQVLNTMREAANAMKLAHKDIDVDKV 440
           LKRK+ YE+Q+ Q+     +I  Q   LEGA    + ++ +R  A+AMK   K  ++D V
Sbjct: 64  LKRKRLYEQQVEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASAMKAMQKATNIDDV 123

Query: 441 HDIMDDIAEQHDISREITEAIS 506
              MD+I EQ +  ++I EA+S
Sbjct: 124 DKTMDEINEQTENMKQIQEALS 145


>At4g29160.2 68417.m04173 SNF7 family protein contains Pfam domain,
           PF03357: SNF7 family
          Length = 192

 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 30/82 (36%), Positives = 47/82 (57%)
 Frame = +3

Query: 261 LKRKKRYEKQLTQIDGTLTQIEAQREALEGANTNAQVLNTMREAANAMKLAHKDIDVDKV 440
           LKRK+ YE Q+ Q+     +I  Q   LEGA    + ++ +R  A+AMK   K  ++D V
Sbjct: 36  LKRKRLYEGQVEQLGNFQLRIHDQMIMLEGAKATTETVDALRSGASAMKAMQKATNIDDV 95

Query: 441 HDIMDDIAEQHDISREITEAIS 506
              MD+I EQ +  ++I EA++
Sbjct: 96  DKTMDEINEQTENMKQIQEALA 117


>At4g29160.1 68417.m04172 SNF7 family protein contains Pfam domain,
           PF03357: SNF7 family
          Length = 219

 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 30/82 (36%), Positives = 47/82 (57%)
 Frame = +3

Query: 261 LKRKKRYEKQLTQIDGTLTQIEAQREALEGANTNAQVLNTMREAANAMKLAHKDIDVDKV 440
           LKRK+ YE Q+ Q+     +I  Q   LEGA    + ++ +R  A+AMK   K  ++D V
Sbjct: 63  LKRKRLYEGQVEQLGNFQLRIHDQMIMLEGAKATTETVDALRSGASAMKAMQKATNIDDV 122

Query: 441 HDIMDDIAEQHDISREITEAIS 506
              MD+I EQ +  ++I EA++
Sbjct: 123 DKTMDEINEQTENMKQIQEALA 144


>At5g09260.1 68418.m01069 SNF7-related contains similarity to
           nuclear protein SNF7 [Saccharomyces cerevisiae]
           SWISS-PROT:P39929
          Length = 216

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 24/84 (28%), Positives = 45/84 (53%)
 Frame = +3

Query: 258 ALKRKKRYEKQLTQIDGTLTQIEAQREALEGANTNAQVLNTMREAANAMKLAHKDIDVDK 437
           ALK+K+  E+ L Q+D  L  +E Q   +E  +    V  ++++  NA+K    ++++D 
Sbjct: 61  ALKKKRTQEELLKQVDQWLINVEQQLADIELTSKQKAVFESLKQGNNAIKAIQSEVNLDD 120

Query: 438 VHDIMDDIAEQHDISREITEAISK 509
           V  +MDD AE      E++  + +
Sbjct: 121 VQKLMDDTAEAKAYQDELSAILGE 144


>At5g63880.1 68418.m08020 SNF7 family protein contains Pfam domain,
           PF03357: SNF7 family
          Length = 219

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 21/84 (25%), Positives = 44/84 (52%)
 Frame = +3

Query: 258 ALKRKKRYEKQLTQIDGTLTQIEAQREALEGANTNAQVLNTMREAANAMKLAHKDIDVDK 437
           AL++K+  E+ L Q+D  +  +E Q   +E  +    V  ++++  +A+K    ++D+D 
Sbjct: 61  ALRKKRTQEELLKQVDQWVINVEQQLTDIELTSKQKAVFESLKQGNSAIKAIQSELDLDD 120

Query: 438 VHDIMDDIAEQHDISREITEAISK 509
           V  +MDD A+      E+   + +
Sbjct: 121 VQKLMDDTADAKAYQDELNAILGE 144


>At3g53180.1 68416.m05860 glutamine synthetase, putative similar to
           glutamine synthetase (glutamate--ammonia ligase)
           [Bacillus subtilis] SWISS-PROT:P12425
          Length = 845

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/59 (27%), Positives = 29/59 (49%)
 Frame = +3

Query: 273 KRYEKQLTQIDGTLTQIEAQREALEGANTNAQVLNTMREAANAMKLAHKDIDVDKVHDI 449
           KR  +++ Q+ GT   +EA  E  + +  ++      +EA  +  L    + +DK HDI
Sbjct: 54  KRNLREIAQLYGTEVSLEAVEEHRKTSGLDSFTSKCFKEARISALLIDDGLKLDKKHDI 112


>At5g27750.1 68418.m03328 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 459

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -3

Query: 149 SRSFWIASCVVGPFSSFLPPNIFPRKLIL 63
           S  +W   C++ P+  F+P N+F  K ++
Sbjct: 116 STMYWEEECIMYPYLEFMPLNLFTSKTLV 144


>At1g22260.1 68414.m02782 expressed protein
          Length = 857

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 19/69 (27%), Positives = 32/69 (46%)
 Frame = +3

Query: 270 KKRYEKQLTQIDGTLTQIEAQREALEGANTNAQVLNTMREAANAMKLAHKDIDVDKVHDI 449
           KK+Y+  L        Q+E  R   E +  N Q +N +R   +  K    + + DKV  I
Sbjct: 534 KKQYDLMLES-----KQLELSRHLKELSQRNDQAINEIRRKYDVEKHEIINSEKDKVEKI 588

Query: 450 MDDIAEQHD 476
           + D++ + D
Sbjct: 589 IKDLSNKFD 597


>At2g46880.1 68415.m05853 calcineurin-like phosphoesterase family
           protein contains Pfam profile: PF00149 calcineurin-like
           phosphoesterase
          Length = 401

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = -3

Query: 431 HINVFVCELHGIS-CLAHSVQYLGIG 357
           H+N F  ELHGI+ C A    Y G G
Sbjct: 307 HVNDFCAELHGINLCYAGGAGYHGYG 332


>At5g46500.1 68418.m05726 expressed protein
          Length = 417

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = +3

Query: 294 TQIDGTLTQIEAQREALEGANTNAQVLNTMREAANAMKLAHKDIDVDKVHDIMDDIAE 467
           T + G + +IE   E+    + N +   + + AA      H DID++++ D  DDI E
Sbjct: 266 TPVQGLVNEIEHNGES---GDNNVETERSTKHAAQRNYYDHVDIDIEQM-DSDDDIEE 319


>At4g07520.1 68417.m01174 hypothetical protein contains Pfam profile
           PF03384: Drosophila protein of unknown function, DUF287
          Length = 734

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/58 (22%), Positives = 25/58 (43%)
 Frame = +3

Query: 324 EAQREALEGANTNAQVLNTMREAANAMKLAHKDIDVDKVHDIMDDIAEQHDISREITE 497
           +  +E  +G N    V   +   A+    A  + + ++ HD+  +  E HD+  E  E
Sbjct: 525 DVNKEKEDGGNKEKNVNVAIETEASVEPEASVEPEANETHDVEPEANETHDVEPEANE 582


>At3g05070.1 68416.m00550 expressed protein
          Length = 144

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 217 ARKHGTKNKRAAMQLSSGRRDTRSNLLK*MGPSLRLR 327
           ARK   K  RAA +LS  + D     ++  GP+++ R
Sbjct: 14  ARKEALKALRAAQELSETKEDGEDEAVEEDGPAMKFR 50


>At1g22275.1 68414.m02784 expressed protein
          Length = 856

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 18/69 (26%), Positives = 33/69 (47%)
 Frame = +3

Query: 270 KKRYEKQLTQIDGTLTQIEAQREALEGANTNAQVLNTMREAANAMKLAHKDIDVDKVHDI 449
           KK+Y+  L        Q+E  R   E +  N Q +N +R   +  K    + + DKV  I
Sbjct: 534 KKQYDLMLES-----KQLELSRHLKELSQRNDQAINEIRRKYDVEKHEIINSEKDKVEKI 588

Query: 450 MDDIAEQHD 476
           + +++ ++D
Sbjct: 589 IKELSTKYD 597


>At1g21270.1 68414.m02658 wall-associated kinase 2 (WAK2) identical
           to wall-associated kinase 2 [Arabidopsis thaliana]
           GI:4826399; induced by salicylic acid or INA
           (PMID:10380805)
          Length = 732

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 21/82 (25%), Positives = 36/82 (43%)
 Frame = +3

Query: 246 SCHAALKRKKRYEKQLTQIDGTLTQIEAQREALEGANTNAQVLNTMREAANAMKLAHKDI 425
           SC A+  +  R+ +    IDG +   + QRE  E A   A+    M E    MK    ++
Sbjct: 618 SCFASATKNNRFHEI---IDGQVMNEDNQREIQEAARIAAECTRLMGEERPRMKEVAAEL 674

Query: 426 DVDKVHDIMDDIAEQHDISREI 491
           +  +V       ++Q+  + EI
Sbjct: 675 EALRVKTTKYKWSDQYRETGEI 696


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,413,763
Number of Sequences: 28952
Number of extensions: 248308
Number of successful extensions: 751
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)