Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0308
(711 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 128 6e-31
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 50 2e-07
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 46 5e-06
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 40 4e-04
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 39 6e-04
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 34 0.023
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 31 0.21
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 29 0.50
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S... 27 2.0
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc... 27 2.0
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|... 27 3.5
SPAC4G9.11c |cmb1||cytosine-mismatch binding protein 1|Schizosac... 26 4.6
SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomy... 26 4.6
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 25 8.1
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa... 25 8.1
SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex ... 25 8.1
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 128 bits (310), Expect = 6e-31
Identities = 54/85 (63%), Positives = 77/85 (90%)
Frame = +3
Query: 255 EMKHKTATETVLVKGLVMDHGARHPDMPKRVENAYILTCNVSLEYEKTEVNSGFFYKSAE 434
+M++++A++T L++GL++DHGARHPDMPK+V+NAYIL NVSLEYEK+E+NSGFFY ++E
Sbjct: 193 KMQNRSASDTQLIRGLLLDHGARHPDMPKQVKNAYILILNVSLEYEKSEINSGFFYSTSE 252
Query: 435 DREKLVAAEREFIDQRVRKIVALKK 509
RE+LV +ER+F+D ++RKIV LKK
Sbjct: 253 QRERLVESERKFVDNKLRKIVELKK 277
Score = 100 bits (239), Expect = 2e-22
Identities = 45/86 (52%), Positives = 65/86 (75%)
Frame = +1
Query: 1 ISEGLHPRIITEGFDIARNKSLEVLESMKIPIEIARENLVDVARTSLKTKVHPSLADVLT 180
I EGLHP +I++GF++A+N++L L+S K E+ RE L++VA+TSL TK+ + + L
Sbjct: 108 IREGLHPSLISDGFNLAKNEALTFLDSFKTDFEVDREVLLNVAKTSLSTKISSKVVESLA 167
Query: 181 DACVDAVLTIRTPGKPVDLHMVEIMR 258
A VDA+LTIR P +P+DLHMVEIM+
Sbjct: 168 PAVVDAILTIRRPDEPIDLHMVEIMK 193
Score = 84.2 bits (199), Expect = 2e-17
Identities = 46/71 (64%), Positives = 52/71 (73%), Gaps = 2/71 (2%)
Frame = +2
Query: 503 QKKLC--DGTDNTFVVINQKGIDPLSLDAFAKEGIIGLRRAKRRNMERLALACGGGPLLT 676
+K++C D T N FV+INQKGIDPLSLD AK GI+ LRRAKRRNMERL LAC GG
Sbjct: 276 KKEVCERDPTAN-FVIINQKGIDPLSLDVLAKNGIMALRRAKRRNMERLQLAC-GGVAQN 333
Query: 677 LVDDLTEDALG 709
VDDL + LG
Sbjct: 334 SVDDLNPEVLG 344
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 50.4 bits (115), Expect = 2e-07
Identities = 28/89 (31%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Frame = +1
Query: 1 ISEGLHPRIITEGFDIARNKSLEVLESMKIPIEIA-RENLVDVARTSLKTKVHPSLADVL 177
+ +G+HP +I E F A +++ ++ + IE++ RE+L+ A TSL +K+ +++L
Sbjct: 111 LKKGIHPTVIAESFQRAAGFTVDCMKENALAIELSDRESLLRAATTSLNSKIVSQYSNLL 170
Query: 178 TDACVDAVLTIRTP--GKPVDLHMVEIMR 258
VDAVL + P VDL + I++
Sbjct: 171 APIAVDAVLKVIDPRVATNVDLKDIRIVK 199
Score = 31.1 bits (67), Expect = 0.16
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Frame = +3
Query: 279 ETVLVKGLVMDHGA-RHPDMPKRVENAYILTCNVSLEYEKTEVNSGFFYKSAEDREKLVA 455
+T L+ GL + A + P R+E A I L K ++ + +K++
Sbjct: 207 DTELIPGLALTQTAVKSAGGPTRIEKANIALIQFQLSPPKPDMENQVVVNDYRQMDKILK 266
Query: 456 AEREFIDQRVRKIVALKKNYATVLTILSSL 545
ER+++ +KI KK A V+ I S+
Sbjct: 267 EERQYLLNMCKKI---KKAGANVILIQKSI 293
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 46.0 bits (104), Expect = 5e-06
Identities = 24/72 (33%), Positives = 35/72 (48%)
Frame = +3
Query: 279 ETVLVKGLVMDHGARHPDMPKRVENAYILTCNVSLEYEKTEVNSGFFYKSAEDREKLVAA 458
+T LVKG+V+D HP MP R+ENA I E K + S + E L A
Sbjct: 223 DTKLVKGVVVDKDMSHPQMPHRIENAKIAILTCPFEPPKPKTKHKLDITSVSEFEALQAY 282
Query: 459 EREFIDQRVRKI 494
E+E + ++ +
Sbjct: 283 EKEKFQEMIKHV 294
Score = 42.3 bits (95), Expect = 7e-05
Identities = 25/88 (28%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Frame = +1
Query: 1 ISEGLHPRIITEGFDIARNKSLEVLESMKIPIEIARENLVDV---ARTSLKTKVHPSLAD 171
I +G+HP I +G++ A +++ L+++ ++ + EN ++ A+TSL +KV D
Sbjct: 126 IDKGIHPIRIADGYEKACQVAVKHLDAISDVVDFSPENTTNLFRSAKTSLGSKVVSKAHD 185
Query: 172 VLTDACVDAVLTIR-TPGKPVDLHMVEI 252
+ VDAVL++ K VD ++++
Sbjct: 186 HFANIAVDAVLSVADLQRKDVDFELIKV 213
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 39.9 bits (89), Expect = 4e-04
Identities = 19/73 (26%), Positives = 37/73 (50%)
Frame = +3
Query: 288 LVKGLVMDHGARHPDMPKRVENAYILTCNVSLEYEKTEVNSGFFYKSAEDREKLVAAERE 467
++ G++++ HP M +R+EN I+ + LEY K E + D +++ E E
Sbjct: 212 VLDGVMLNKDVTHPKMRRRIENPRIVLLDCPLEYRKGESQTNIEISKDTDWNRILEIEEE 271
Query: 468 FIDQRVRKIVALK 506
+ + I+A+K
Sbjct: 272 QVKRMCDYIIAVK 284
Score = 38.7 bits (86), Expect = 8e-04
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +2
Query: 506 KKLCDG--TDNTFVVINQKGIDPLSLDAFAKEGIIGLRRAKRRNMERLALACGGGPLLTL 679
K++CD +VI +KG+ L+ K I LRR ++ + R+A ACG ++
Sbjct: 274 KRMCDYIIAVKPDLVITEKGVSDLAQHYLLKANITALRRTRKSDNNRIARACGAN-IVNR 332
Query: 680 VDDLTEDALG 709
++DL E +G
Sbjct: 333 LEDLREKDVG 342
Score = 30.3 bits (65), Expect = 0.28
Identities = 14/67 (20%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +1
Query: 13 LHPRIITEGFDIARNKSLEVLESMKIPIEI-ARENLVDVARTSLKTKVHPSLADVLTDAC 189
+HP ++ F A +L +++ + +P+ + + + RT + TK+ +D++
Sbjct: 115 IHPVVMIRSFKQALEDALSIIDEITLPVNVDDNAEMFRLIRTCIGTKLVARWSDLMCHLA 174
Query: 190 VDAVLTI 210
+ AV T+
Sbjct: 175 LRAVRTV 181
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 39.1 bits (87), Expect = 6e-04
Identities = 22/90 (24%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Frame = +1
Query: 1 ISEGLHPRIITEGFDIARNKSLEVLESMKI-----PIEIARENLVDVARTSLKTKVHPSL 165
++ +HP++I +G+ IA +++ L + I P + R +L ++ART+L +K+
Sbjct: 113 VNAKIHPQVIIDGYRIATKTAIDALRASSIDNSSDPAKF-RSDLENIARTTLSSKILSQN 171
Query: 166 ADVLTDACVDAVLTIRTPGKPVDLHMVEIM 255
+ VDAVL ++ ++ +++I+
Sbjct: 172 KNHFAQLAVDAVLRLKGSTNLDNIQIIKIL 201
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 33.9 bits (74), Expect = 0.023
Identities = 22/77 (28%), Positives = 37/77 (48%)
Frame = +3
Query: 267 KTATETVLVKGLVMDHGARHPDMPKRVENAYILTCNVSLEYEKTEVNSGFFYKSAEDREK 446
K++ E+VLVKG ++ M RV+NA I ++ L+ K + + EK
Sbjct: 208 KSSRESVLVKGYALNCTIASQAMKTRVQNAKIAVLDMDLQKTKMALGVHVTIDDPDQLEK 267
Query: 447 LVAAEREFIDQRVRKIV 497
+ E +RV+KI+
Sbjct: 268 IREREVMITLERVKKIL 284
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1385
Score = 30.7 bits (66), Expect = 0.21
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Frame = +3
Query: 348 ENAYILTCNVSLEYEKTEVNSGFFYKSAEDRE-KLVAAEREFIDQRVRKIVALKKNYATV 524
E+AY+ +LE EV +K +RE + E+EF+D I LK++ + +
Sbjct: 1060 ESAYLEKRIQTLERSLEEVTP--IWKKQWERELNAIVQEQEFLDSHTVLISDLKRDLSAL 1117
Query: 525 LTILSSLSTKKE 560
T+LS++S E
Sbjct: 1118 STVLSNVSAIAE 1129
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 29.5 bits (63), Expect = 0.50
Identities = 18/75 (24%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Frame = +1
Query: 1 ISEGLHPRIITEGFDIARNKSLEVLESMKIPIEIA-----RENLVDVARTSLKTKVHPSL 165
+ +G+ +I G+ A ++ ++ + I ++++ R+ L A T++ +K+ S
Sbjct: 116 VEDGVSSHLIIRGYRKAAQLAVNKIKEIAIHLDLSDEGKLRDLLTKCASTAMNSKLIRSN 175
Query: 166 ADVLTDACVDAVLTI 210
+ T VDAVLT+
Sbjct: 176 STFFTKMVVDAVLTL 190
>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 690
Score = 27.5 bits (58), Expect = 2.0
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -3
Query: 199 PHQRKHQLAHLPSLGGP*F*VKY 131
PHQR H A L GGP F + Y
Sbjct: 63 PHQRAHNAAALARSGGPGFSMNY 85
>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 636
Score = 27.5 bits (58), Expect = 2.0
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +2
Query: 485 KKDRCSQKKLCDGTDNTFVVINQKGIDPLSLDAFAKEGIIGL 610
K D C +LC G D +++ ++P+ D F K+ + G+
Sbjct: 428 KGDYCEVMELCSGGDLYTLIMAAGRLEPMEADCFFKQLMRGV 469
>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 997
Score = 26.6 bits (56), Expect = 3.5
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = +2
Query: 284 CTCKRSSNGSWCTSPRYAKACRKC 355
C +R SNG WCT K C
Sbjct: 973 CIIERDSNGRWCTKHLQRKTKEVC 996
>SPAC4G9.11c |cmb1||cytosine-mismatch binding protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 223
Score = 26.2 bits (55), Expect = 4.6
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +3
Query: 321 RHPDMPKRVENAYIL 365
RHPD+PK+ +A+IL
Sbjct: 142 RHPDVPKKPSSAFIL 156
>SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 442
Score = 26.2 bits (55), Expect = 4.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 369 CNVSLEYEKTEVNSGFFYKS 428
CN L ++ TE NSG+ YK+
Sbjct: 162 CNGGLRWQITEFNSGYNYKN 181
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 25.4 bits (53), Expect = 8.1
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +3
Query: 327 PDMPKRVENAYILTCNVSLEYEKTEVNSGFFYKSAEDR 440
PD V+NA + T +++ T V+ GF + + R
Sbjct: 11 PDFASDVDNASLFTQSIATTSASTSVDDGFSFDDSISR 48
>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.4 bits (53), Expect = 8.1
Identities = 11/43 (25%), Positives = 27/43 (62%)
Frame = +1
Query: 55 NKSLEVLESMKIPIEIARENLVDVARTSLKTKVHPSLADVLTD 183
++SL++L+ + ++ ++ VD+ART ++ S ++V+ D
Sbjct: 270 SESLDLLDDFNYQVTVSNKSFVDIARTEYFITIY-SDSNVILD 311
>SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex
subunit |Schizosaccharomyces pombe|chr 2|||Manual
Length = 509
Score = 25.4 bits (53), Expect = 8.1
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 28 ITEGFDIARNKSLEVLESMKI 90
I EGF IAR K +E LE +K+
Sbjct: 448 IAEGFLIARAKRVESLERVKV 468
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,830,247
Number of Sequences: 5004
Number of extensions: 56661
Number of successful extensions: 176
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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