Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0308
         (711 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)              120   9e-28
SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                  48   8e-06
SB_25100| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.003
SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                   38   0.008
SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)                      37   0.019
SB_9307| Best HMM Match : Ion_trans_2 (HMM E-Value=1.8e-14)            31   1.2  
SB_54147| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_57005| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)              28   6.5  

>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score =  120 bits (290), Expect = 9e-28
 Identities = 53/85 (62%), Positives = 72/85 (84%)
 Frame = +1

Query: 1   ISEGLHPRIITEGFDIARNKSLEVLESMKIPIEIARENLVDVARTSLKTKVHPSLADVLT 180
           +SEGLHPR++TEGF++A+ K+LEVLE +K+  E+ R+ L++VA+TSL+TKV   LAD+LT
Sbjct: 212 VSEGLHPRLVTEGFEVAKKKALEVLEEVKVSREMDRDTLINVAKTSLRTKVRTELADLLT 271

Query: 181 DACVDAVLTIRTPGKPVDLHMVEIM 255
           +  VDAVLTIR P KP+DLHMVE+M
Sbjct: 272 EVVVDAVLTIRKPKKPIDLHMVEVM 296



 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 31/63 (49%), Positives = 42/63 (66%)
 Frame = +3

Query: 321 RHPDMPKRVENAYILTCNVSLEYEKTEVNSGFFYKSAEDREKLVAAEREFIDQRVRKIVA 500
           R P  P  +    ++      + +  EVNSGFFYKS+E+REKLVAAER+F D +V+KI+ 
Sbjct: 282 RKPKKPIDLHMVEVMEMRHKTDSDSNEVNSGFFYKSSEEREKLVAAERKFTDDKVQKIID 341

Query: 501 LKK 509
           LKK
Sbjct: 342 LKK 344


>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 505

 Score = 48.0 bits (109), Expect = 8e-06
 Identities = 27/80 (33%), Positives = 40/80 (50%)
 Frame = +3

Query: 279 ETVLVKGLVMDHGARHPDMPKRVENAYILTCNVSLEYEKTEVNSGFFYKSAEDREKLVAA 458
           +TVLVKG+V+D    HP MPK V++A I       E  K +        + ED +KL   
Sbjct: 219 DTVLVKGVVVDKDMSHPQMPKVVKDAKIAILTCPFEPPKPKTKHKLDVATVEDYKKLQEY 278

Query: 459 EREFIDQRVRKIVALKKNYA 518
           ERE   + ++++     N A
Sbjct: 279 EREKFTEMIKQVKDTGANLA 298


>SB_25100| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 546

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
 Frame = +2

Query: 506 KKLCDGTD--NTFVVINQKGIDPLSLDAFAKEGIIGLRRAKRRNMERLALACGGGPLLTL 679
           KK+CD        +VI +KGI  L+     K  I  +RR ++ +  R+A AC G  ++  
Sbjct: 38  KKMCDEVIALKPDLVITEKGISDLAQHFLMKANITAIRRVRKTDNNRIARAC-GATIVNR 96

Query: 680 VDDLTEDALG 709
            ++L E+ +G
Sbjct: 97  TEELKEEDIG 106



 Score = 32.3 bits (70), Expect = 0.40
 Identities = 19/63 (30%), Positives = 32/63 (50%)
 Frame = +3

Query: 360 ILTCNVSLEYEKTEVNSGFFYKSAEDREKLVAAEREFIDQRVRKIVALKKNYATVLTILS 539
           +L CN  LEY+K E  +     S  D  +++  E EFI +   +++ALK +       +S
Sbjct: 2   LLDCN--LEYKKGESQTSLELSSDTDFSRVLQLEEEFIKKMCDEVIALKPDLVITEKGIS 59

Query: 540 SLS 548
            L+
Sbjct: 60  DLA 62


>SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 531

 Score = 37.9 bits (84), Expect = 0.008
 Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
 Frame = +1

Query: 1   ISEGLHPRIITEGFDIARNKSLEVLESMKIPI----EIARENLVDVARTSLKTKVHPSLA 168
           +S  +HP+ I  G+  +   + + LE+  +      E  RE+L+++ART+L +K+     
Sbjct: 114 VSCKIHPQTIVAGWRKSVKAAEKALEAAAVDHSSDPEKFREDLMNIARTTLSSKILVQHR 173

Query: 169 DVLTDACVDAVLTIRTPGKPVDLHMVEIMR 258
           D      VDAVL ++  G   DL+ ++I++
Sbjct: 174 DHFAKLAVDAVLRLKGSG---DLNAIQIIK 200



 Score = 29.5 bits (63), Expect = 2.8
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +3

Query: 330 DMPKRVENAYILTCNVSLEYEKTEV-NSGFFYKSAEDREKLVAAEREFIDQRVRKIV 497
           + PK++ENA IL  N  ++ +K +V  S     S      L  AE++ + ++V  I+
Sbjct: 224 NQPKKIENAKILIANTPMDADKIKVFGSRVRVDSTAKIADLEMAEKQKMKEKVEMII 280


>SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)
          Length = 144

 Score = 36.7 bits (81), Expect = 0.019
 Identities = 25/90 (27%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
 Frame = +1

Query: 1   ISEGLHPRIITEGFDIARNKSLEVLESMKIPI----EIARENLVDVARTSLKTKVHPSLA 168
           +S  +HP+ I  G+  +   + + LE+  +      E  R++L+++ART+L +K+     
Sbjct: 32  VSCKIHPQTIVAGWRKSVKAAEKALEAAAVDHSSDPEKFRDDLMNIARTTLSSKILVQHR 91

Query: 169 DVLTDACVDAVLTIRTPGKPVDLHMVEIMR 258
           D      VDAVL ++  G   DL+ ++I++
Sbjct: 92  DHFAKLAVDAVLRLKGSG---DLNAIQIIK 118


>SB_9307| Best HMM Match : Ion_trans_2 (HMM E-Value=1.8e-14)
          Length = 483

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -2

Query: 359 VCIFYTLWHIWVTCTMIHY*TFYKYSFSSRLVFHLI 252
           + +  TLW  W    +I    FY Y F   LVFHL+
Sbjct: 329 IFVMKTLWKTW----LIRIGLFYSYGFLGALVFHLV 360


>SB_54147| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 74

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +3

Query: 330 DMPKRVENAYILTCNVSLEYEKTEV-NSGFFYKSAEDREKLVAAEREFIDQRVRKIV 497
           + PK++ENA IL  N  ++ +K +V  S     S     +L  AE++ +  +V  I+
Sbjct: 8   NQPKKIENAKILIANTPMDADKVKVFGSRVRVDSTAKIAELEKAEKQKMKDKVEMII 64


>SB_57005| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 251

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +3

Query: 201 THHSNSRQTC*SAHG*NYEMKHKTA 275
           T HSN+R  C   H  NY +KH  A
Sbjct: 171 TMHSNTRTQCTQTHAHNYALKHTHA 195


>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5834

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = +2

Query: 284 CTCKRSSNGSWCTS--PRY-AKACRKCIHSHM 370
           CTC+   +GS C S  PRY    C +C+ +++
Sbjct: 397 CTCRHGFSGSSCESCQPRYTGSECERCVTNYI 428


>SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)
          Length = 3397

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +3

Query: 423  KSAEDREKLVAAEREFIDQRVRKIVALKKNYATVLTILSS 542
            +SA D E+ V    EF+D+  R++  + K Y T  TI+ S
Sbjct: 2926 RSATDPEEYV---EEFVDEEGRQVKRVMKKYVTTKTIVRS 2962


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,206,119
Number of Sequences: 59808
Number of extensions: 420787
Number of successful extensions: 1127
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1127
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)