Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0308
(711 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U13070-3|AAM22058.1| 429|Caenorhabditis elegans Chaperonin cont... 135 3e-32
U13070-2|AAC46642.1| 539|Caenorhabditis elegans Chaperonin cont... 135 3e-32
Z35599-3|CAA84660.1| 542|Caenorhabditis elegans Hypothetical pr... 57 1e-08
Z32840-7|CAA83681.1| 542|Caenorhabditis elegans Hypothetical pr... 57 1e-08
U25698-1|AAA92843.1| 542|Caenorhabditis elegans CCT-5 protein. 57 1e-08
Z32840-6|CAD01079.1| 336|Caenorhabditis elegans Hypothetical pr... 48 7e-06
Z49068-8|CAA88861.1| 540|Caenorhabditis elegans Hypothetical pr... 46 4e-05
U25697-1|AAA92842.1| 540|Caenorhabditis elegans CCT-4 protein. 46 4e-05
AC024136-4|AAF35963.3| 543|Caenorhabditis elegans Hypothetical ... 44 1e-04
Z66500-12|CAA91308.1| 549|Caenorhabditis elegans Hypothetical p... 40 0.001
U07941-1|AAB05072.1| 549|Caenorhabditis elegans CCT-1 protein. 40 0.001
Z68318-10|CAA92697.1| 529|Caenorhabditis elegans Hypothetical p... 36 0.022
U25632-1|AAA93233.1| 529|Caenorhabditis elegans CCT-2 protein. 36 0.022
AL031268-2|CAA20331.1| 529|Caenorhabditis elegans Hypothetical ... 36 0.022
Z68012-1|CAA92016.1| 304|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z92777-11|CAB07168.2| 338|Caenorhabditis elegans Hypothetical p... 28 5.7
Z11505-1|CAA77582.1| 460|Caenorhabditis elegans Hypothetical pr... 28 7.6
U64600-3|AAK39204.1| 656|Caenorhabditis elegans Temporarily ass... 28 7.6
>U13070-3|AAM22058.1| 429|Caenorhabditis elegans Chaperonin
containing tcp-1 protein6, isoform b protein.
Length = 429
Score = 135 bits (327), Expect = 3e-32
Identities = 61/85 (71%), Positives = 74/85 (87%)
Frame = +3
Query: 255 EMKHKTATETVLVKGLVMDHGARHPDMPKRVENAYILTCNVSLEYEKTEVNSGFFYKSAE 434
EM H + +T LV+GLV+DHGARHPDMP+ V++AYILTCNVSLEYEKTEVNSG FYK+A+
Sbjct: 195 EMHHDSDMDTTLVRGLVLDHGARHPDMPRHVKDAYILTCNVSLEYEKTEVNSGLFYKTAK 254
Query: 435 DREKLVAAEREFIDQRVRKIVALKK 509
+RE L+AAEREFI +RV KI+ LKK
Sbjct: 255 EREALLAAEREFITRRVHKIIELKK 279
Score = 97.9 bits (233), Expect = 6e-21
Identities = 47/85 (55%), Positives = 61/85 (71%)
Frame = +1
Query: 1 ISEGLHPRIITEGFDIARNKSLEVLESMKIPIEIARENLVDVARTSLKTKVHPSLADVLT 180
+ EGLHPRI+TEGF+ A K+LE+LE K + R+ LV+V RT+L+TK+H LAD +T
Sbjct: 110 VLEGLHPRIVTEGFEWANTKTLELLEKFKKEAPVERDLLVEVCRTALRTKLHQKLADHIT 169
Query: 181 DACVDAVLTIRTPGKPVDLHMVEIM 255
+ VDAVL IR G+ DLHMVE M
Sbjct: 170 ECVVDAVLAIRRDGEEPDLHMVEKM 194
Score = 82.2 bits (194), Expect = 3e-16
Identities = 43/64 (67%), Positives = 47/64 (73%)
Frame = +2
Query: 518 DGTDNTFVVINQKGIDPLSLDAFAKEGIIGLRRAKRRNMERLALACGGGPLLTLVDDLTE 697
DG + FVVINQKGIDP SLD A EGI+ LRRAKRRNMERL LA GG + VDDLT
Sbjct: 287 DGKNKGFVVINQKGIDPPSLDLLASEGILALRRAKRRNMERLQLAV-GGEAVNSVDDLTP 345
Query: 698 DALG 709
+ LG
Sbjct: 346 EDLG 349
>U13070-2|AAC46642.1| 539|Caenorhabditis elegans Chaperonin
containing tcp-1 protein6, isoform a protein.
Length = 539
Score = 135 bits (327), Expect = 3e-32
Identities = 61/85 (71%), Positives = 74/85 (87%)
Frame = +3
Query: 255 EMKHKTATETVLVKGLVMDHGARHPDMPKRVENAYILTCNVSLEYEKTEVNSGFFYKSAE 434
EM H + +T LV+GLV+DHGARHPDMP+ V++AYILTCNVSLEYEKTEVNSG FYK+A+
Sbjct: 195 EMHHDSDMDTTLVRGLVLDHGARHPDMPRHVKDAYILTCNVSLEYEKTEVNSGLFYKTAK 254
Query: 435 DREKLVAAEREFIDQRVRKIVALKK 509
+RE L+AAEREFI +RV KI+ LKK
Sbjct: 255 EREALLAAEREFITRRVHKIIELKK 279
Score = 97.9 bits (233), Expect = 6e-21
Identities = 47/85 (55%), Positives = 61/85 (71%)
Frame = +1
Query: 1 ISEGLHPRIITEGFDIARNKSLEVLESMKIPIEIARENLVDVARTSLKTKVHPSLADVLT 180
+ EGLHPRI+TEGF+ A K+LE+LE K + R+ LV+V RT+L+TK+H LAD +T
Sbjct: 110 VLEGLHPRIVTEGFEWANTKTLELLEKFKKEAPVERDLLVEVCRTALRTKLHQKLADHIT 169
Query: 181 DACVDAVLTIRTPGKPVDLHMVEIM 255
+ VDAVL IR G+ DLHMVE M
Sbjct: 170 ECVVDAVLAIRRDGEEPDLHMVEKM 194
Score = 82.2 bits (194), Expect = 3e-16
Identities = 43/64 (67%), Positives = 47/64 (73%)
Frame = +2
Query: 518 DGTDNTFVVINQKGIDPLSLDAFAKEGIIGLRRAKRRNMERLALACGGGPLLTLVDDLTE 697
DG + FVVINQKGIDP SLD A EGI+ LRRAKRRNMERL LA GG + VDDLT
Sbjct: 287 DGKNKGFVVINQKGIDPPSLDLLASEGILALRRAKRRNMERLQLAV-GGEAVNSVDDLTP 345
Query: 698 DALG 709
+ LG
Sbjct: 346 EDLG 349
>Z35599-3|CAA84660.1| 542|Caenorhabditis elegans Hypothetical
protein C07G2.3a protein.
Length = 542
Score = 57.2 bits (132), Expect = 1e-08
Identities = 34/87 (39%), Positives = 52/87 (59%), Gaps = 3/87 (3%)
Frame = +1
Query: 1 ISEGLHPRIITEGFDIARNKSLEVLESM--KIPIEIARENLVDVARTSLKTKVHPSLADV 174
I G+HP I +GFD+A K+LE L+S+ K P+E RE LV+ A+TSL +K+
Sbjct: 125 IDRGIHPIKIADGFDLACKKALETLDSISDKFPVE-NRERLVETAQTSLGSKIVNRSLRQ 183
Query: 175 LTDACVDAVLTIR-TPGKPVDLHMVEI 252
+ VDAVL++ K V+ M+++
Sbjct: 184 FAEIAVDAVLSVADIESKDVNFEMIKM 210
Score = 48.0 bits (109), Expect = 7e-06
Identities = 24/72 (33%), Positives = 37/72 (51%)
Frame = +3
Query: 279 ETVLVKGLVMDHGARHPDMPKRVENAYILTCNVSLEYEKTEVNSGFFYKSAEDREKLVAA 458
+T+LVKG+V+D HP MPK ++NA + E K + S ED + L
Sbjct: 220 DTILVKGIVIDKTMSHPQMPKELKNAKVAILTCPFEPPKPKTKHKLDITSTEDFKALRDY 279
Query: 459 EREFIDQRVRKI 494
ERE + +R++
Sbjct: 280 ERETFETMIRQV 291
>Z32840-7|CAA83681.1| 542|Caenorhabditis elegans Hypothetical
protein C07G2.3a protein.
Length = 542
Score = 57.2 bits (132), Expect = 1e-08
Identities = 34/87 (39%), Positives = 52/87 (59%), Gaps = 3/87 (3%)
Frame = +1
Query: 1 ISEGLHPRIITEGFDIARNKSLEVLESM--KIPIEIARENLVDVARTSLKTKVHPSLADV 174
I G+HP I +GFD+A K+LE L+S+ K P+E RE LV+ A+TSL +K+
Sbjct: 125 IDRGIHPIKIADGFDLACKKALETLDSISDKFPVE-NRERLVETAQTSLGSKIVNRSLRQ 183
Query: 175 LTDACVDAVLTIR-TPGKPVDLHMVEI 252
+ VDAVL++ K V+ M+++
Sbjct: 184 FAEIAVDAVLSVADIESKDVNFEMIKM 210
Score = 48.0 bits (109), Expect = 7e-06
Identities = 24/72 (33%), Positives = 37/72 (51%)
Frame = +3
Query: 279 ETVLVKGLVMDHGARHPDMPKRVENAYILTCNVSLEYEKTEVNSGFFYKSAEDREKLVAA 458
+T+LVKG+V+D HP MPK ++NA + E K + S ED + L
Sbjct: 220 DTILVKGIVIDKTMSHPQMPKELKNAKVAILTCPFEPPKPKTKHKLDITSTEDFKALRDY 279
Query: 459 EREFIDQRVRKI 494
ERE + +R++
Sbjct: 280 ERETFETMIRQV 291
>U25698-1|AAA92843.1| 542|Caenorhabditis elegans CCT-5 protein.
Length = 542
Score = 57.2 bits (132), Expect = 1e-08
Identities = 34/87 (39%), Positives = 52/87 (59%), Gaps = 3/87 (3%)
Frame = +1
Query: 1 ISEGLHPRIITEGFDIARNKSLEVLESM--KIPIEIARENLVDVARTSLKTKVHPSLADV 174
I G+HP I +GFD+A K+LE L+S+ K P+E RE LV+ A+TSL +K+
Sbjct: 125 IDRGIHPIKIADGFDLACKKALETLDSISDKFPVE-NRERLVETAQTSLGSKIVNRSLRQ 183
Query: 175 LTDACVDAVLTIR-TPGKPVDLHMVEI 252
+ VDAVL++ K V+ M+++
Sbjct: 184 FAEIAVDAVLSVADIESKDVNFEMIKM 210
Score = 48.0 bits (109), Expect = 7e-06
Identities = 24/72 (33%), Positives = 37/72 (51%)
Frame = +3
Query: 279 ETVLVKGLVMDHGARHPDMPKRVENAYILTCNVSLEYEKTEVNSGFFYKSAEDREKLVAA 458
+T+LVKG+V+D HP MPK ++NA + E K + S ED + L
Sbjct: 220 DTILVKGIVIDKTMSHPQMPKELKNAKVAILTCPFEPPKPKTKHKLDITSTEDFKALRDY 279
Query: 459 EREFIDQRVRKI 494
ERE + +R++
Sbjct: 280 ERETFETMIRQV 291
>Z32840-6|CAD01079.1| 336|Caenorhabditis elegans Hypothetical
protein C07G2.3b protein.
Length = 336
Score = 48.0 bits (109), Expect = 7e-06
Identities = 24/72 (33%), Positives = 37/72 (51%)
Frame = +3
Query: 279 ETVLVKGLVMDHGARHPDMPKRVENAYILTCNVSLEYEKTEVNSGFFYKSAEDREKLVAA 458
+T+LVKG+V+D HP MPK ++NA + E K + S ED + L
Sbjct: 14 DTILVKGIVIDKTMSHPQMPKELKNAKVAILTCPFEPPKPKTKHKLDITSTEDFKALRDY 73
Query: 459 EREFIDQRVRKI 494
ERE + +R++
Sbjct: 74 ERETFETMIRQV 85
>Z49068-8|CAA88861.1| 540|Caenorhabditis elegans Hypothetical
protein K01C8.10 protein.
Length = 540
Score = 45.6 bits (103), Expect = 4e-05
Identities = 27/89 (30%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Frame = +1
Query: 1 ISEGLHPRIITEGFDIARNKSLEVLESMKIPIEIARENLVD-VARTSLKTKVHPSLADVL 177
+S+G+HP I+E F A ++ ++L+ M P++++ + L++ +A TSL +KV + +L
Sbjct: 123 LSKGIHPTTISESFQSAAAEAEKILDEMSSPVDLSNDALLNKMATTSLNSKVVSQHSWLL 182
Query: 178 TDACVDAVLTI--RTPGKPVDLHMVEIMR 258
V+AV I V+L M++I++
Sbjct: 183 APMAVNAVKKIINSENDSNVNLKMIKIIK 211
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/77 (20%), Positives = 35/77 (45%)
Frame = +3
Query: 270 TATETVLVKGLVMDHGARHPDMPKRVENAYILTCNVSLEYEKTEVNSGFFYKSAEDREKL 449
T E+ L++G ++D P R+E A I + KT++ + ++
Sbjct: 216 TVEESELIEGALIDQKTMGRGAPTRIEKAKIGLIQFQISPPKTDMENQVIITDYAQMDRA 275
Query: 450 VAAEREFIDQRVRKIVA 500
+ ER+++ + ++I A
Sbjct: 276 LKEERQYLLEICKQIKA 292
>U25697-1|AAA92842.1| 540|Caenorhabditis elegans CCT-4 protein.
Length = 540
Score = 45.6 bits (103), Expect = 4e-05
Identities = 27/89 (30%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
Frame = +1
Query: 1 ISEGLHPRIITEGFDIARNKSLEVLESMKIPIEIARENLVD-VARTSLKTKVHPSLADVL 177
+S+G+HP I+E F A ++ ++L+ M P++++ + L++ +A TSL +KV + +L
Sbjct: 123 LSKGIHPTTISESFQSAAAEAEKILDEMSSPVDLSNDALLNKMATTSLNSKVVSQHSWLL 182
Query: 178 TDACVDAVLTI--RTPGKPVDLHMVEIMR 258
V+AV I V+L M++I++
Sbjct: 183 APMAVNAVKKIINSENDSNVNLKMIKIIK 211
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/77 (20%), Positives = 35/77 (45%)
Frame = +3
Query: 270 TATETVLVKGLVMDHGARHPDMPKRVENAYILTCNVSLEYEKTEVNSGFFYKSAEDREKL 449
T E+ L++G ++D P R+E A I + KT++ + ++
Sbjct: 216 TVEESELIEGALIDQKTMGRGAPTRIEKAKIGLIQFQISPPKTDMENQVIITDYAQMDRA 275
Query: 450 VAAEREFIDQRVRKIVA 500
+ ER+++ + ++I A
Sbjct: 276 LKEERQYLLEICKQIKA 292
>AC024136-4|AAF35963.3| 543|Caenorhabditis elegans Hypothetical
protein F54A3.3 protein.
Length = 543
Score = 43.6 bits (98), Expect = 1e-04
Identities = 22/76 (28%), Positives = 42/76 (55%)
Frame = +3
Query: 279 ETVLVKGLVMDHGARHPDMPKRVENAYILTCNVSLEYEKTEVNSGFFYKSAEDREKLVAA 458
++ +VKG+V++ H M +R+EN I+ + +LEY+K E + ED ++
Sbjct: 214 DSQVVKGIVVNKDILHAKMRRRIENPRIVLLDCNLEYKKGESQTSLEIMREEDISAILEQ 273
Query: 459 EREFIDQRVRKIVALK 506
E + I ++ +I+ LK
Sbjct: 274 EEQAIRKQCDEIIKLK 289
Score = 34.3 bits (75), Expect = 0.087
Identities = 20/57 (35%), Positives = 30/57 (52%)
Frame = +2
Query: 539 VVINQKGIDPLSLDAFAKEGIIGLRRAKRRNMERLALACGGGPLLTLVDDLTEDALG 709
+V +KGI L+ K GI LRR K+ + RLA C G ++ DL ++ +G
Sbjct: 292 LVFTEKGISDLAQHFLLKAGITCLRRLKKTDNNRLARVC-GARVVHDTSDLRDEDVG 347
>Z66500-12|CAA91308.1| 549|Caenorhabditis elegans Hypothetical
protein T05C12.7 protein.
Length = 549
Score = 40.3 bits (90), Expect = 0.001
Identities = 32/87 (36%), Positives = 44/87 (50%)
Frame = +3
Query: 267 KTATETVLVKGLVMDHGARHPDMPKRVENAYILTCNVSLEYEKTEVNSGFFYKSAEDREK 446
K+A E+VLVKG ++ MP RV+NA I + SL K +++ G ED K
Sbjct: 206 KSARESVLVKGYALNCTVASQAMPLRVQNAKIACLDFSL--MKAKMHLGISV-VVEDPAK 262
Query: 447 LVAAEREFIDQRVRKIVALKKNYATVL 527
L A RE D R+I + K A V+
Sbjct: 263 LEAIRREEFDITKRRIDKILKAGANVV 289
>U07941-1|AAB05072.1| 549|Caenorhabditis elegans CCT-1 protein.
Length = 549
Score = 40.3 bits (90), Expect = 0.001
Identities = 32/87 (36%), Positives = 44/87 (50%)
Frame = +3
Query: 267 KTATETVLVKGLVMDHGARHPDMPKRVENAYILTCNVSLEYEKTEVNSGFFYKSAEDREK 446
K+A E+VLVKG ++ MP RV+NA I + SL K +++ G ED K
Sbjct: 206 KSARESVLVKGYALNCTVASQAMPLRVQNAKIACLDFSL--MKAKMHLGISV-VVEDPAK 262
Query: 447 LVAAEREFIDQRVRKIVALKKNYATVL 527
L A RE D R+I + K A V+
Sbjct: 263 LEAIRREEFDITKRRIDKILKAGANVV 289
>Z68318-10|CAA92697.1| 529|Caenorhabditis elegans Hypothetical
protein T21B10.7 protein.
Length = 529
Score = 36.3 bits (80), Expect = 0.022
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Frame = +1
Query: 1 ISEGLHPRIITEGFDIARNKSLEVLESMKIPI-EIARENLVDVARTSLKTKVHPSLADVL 177
+++ +HP+ I G+ A + E L+ I + R++L+ +ART+L +K+ +
Sbjct: 114 VNQRIHPQTIISGYRRALGIAQESLKKSSIESGDNIRDDLLKIARTTLGSKILSQHKEHF 173
Query: 178 TDACVDAVLTIRTPG 222
VDAVL ++ G
Sbjct: 174 AQLAVDAVLRLKGSG 188
>U25632-1|AAA93233.1| 529|Caenorhabditis elegans CCT-2 protein.
Length = 529
Score = 36.3 bits (80), Expect = 0.022
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Frame = +1
Query: 1 ISEGLHPRIITEGFDIARNKSLEVLESMKIPI-EIARENLVDVARTSLKTKVHPSLADVL 177
+++ +HP+ I G+ A + E L+ I + R++L+ +ART+L +K+ +
Sbjct: 114 VNQRIHPQTIISGYRRALGIAQESLKKSSIESGDNIRDDLLKIARTTLGSKILSQHKEHF 173
Query: 178 TDACVDAVLTIRTPG 222
VDAVL ++ G
Sbjct: 174 AQLAVDAVLRLKGSG 188
>AL031268-2|CAA20331.1| 529|Caenorhabditis elegans Hypothetical
protein T21B10.7 protein.
Length = 529
Score = 36.3 bits (80), Expect = 0.022
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Frame = +1
Query: 1 ISEGLHPRIITEGFDIARNKSLEVLESMKIPI-EIARENLVDVARTSLKTKVHPSLADVL 177
+++ +HP+ I G+ A + E L+ I + R++L+ +ART+L +K+ +
Sbjct: 114 VNQRIHPQTIISGYRRALGIAQESLKKSSIESGDNIRDDLLKIARTTLGSKILSQHKEHF 173
Query: 178 TDACVDAVLTIRTPG 222
VDAVL ++ G
Sbjct: 174 AQLAVDAVLRLKGSG 188
>Z68012-1|CAA92016.1| 304|Caenorhabditis elegans Hypothetical
protein T24D5.1 protein.
Length = 304
Score = 29.1 bits (62), Expect = 3.3
Identities = 9/25 (36%), Positives = 19/25 (76%)
Frame = +3
Query: 327 PDMPKRVENAYILTCNVSLEYEKTE 401
P++P++ ++ Y+L CN+++ EK E
Sbjct: 166 PEIPRKDQDGYLLECNLNIFLEKLE 190
>Z92777-11|CAB07168.2| 338|Caenorhabditis elegans Hypothetical
protein C17H1.4 protein.
Length = 338
Score = 28.3 bits (60), Expect = 5.7
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Frame = +3
Query: 423 KSAEDREKLVAAEREFIDQRVRKIVALKKNYATVLTILSSLSTKKESTPCHWMLLPKK-- 596
K+ +D + RE IDQ + K +KN++ + + + + KKE+T L +K
Sbjct: 120 KNQKDADNKEILTREKIDQEMLKQTQERKNHSEDIILANVKALKKENTRFQKESLNEKKQ 179
Query: 597 ---VLLDYAEQNGAI 632
+L AE+N AI
Sbjct: 180 FGLKVLKTAEENNAI 194
>Z11505-1|CAA77582.1| 460|Caenorhabditis elegans Hypothetical
protein F59B2.2 protein.
Length = 460
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -1
Query: 627 RRFALRSPIIPSLAKASSDKGSIPFWLITTKVLSV 523
R+F R P +P K SDKG FW++ T +++V
Sbjct: 345 RKFGARFPNVP---KWLSDKGFRVFWVLVTYLMAV 376
>U64600-3|AAK39204.1| 656|Caenorhabditis elegans Temporarily
assigned gene nameprotein 312 protein.
Length = 656
Score = 27.9 bits (59), Expect = 7.6
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = -1
Query: 645 ARRSILRRFALRSPIIPSLAKASSDKGSIPFWLITTKVL-SVPSH 514
+R S+LR+F LR+P P L SS++ S+ + +T V SVP H
Sbjct: 370 SRASVLRQFNLRTP-SPGL--LSSNRNSVENFQTSTNVFRSVPLH 411
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,709,483
Number of Sequences: 27780
Number of extensions: 319784
Number of successful extensions: 816
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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