Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0308
(711 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g16070.1 68418.m01878 chaperonin, putative similar to SWISS-P... 126 2e-29
At3g02530.1 68416.m00241 chaperonin, putative similar to SWISS-P... 123 1e-28
At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P... 63 2e-10
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 44 1e-04
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 44 1e-04
At5g26360.1 68418.m03151 chaperonin, putative similar to SWISS-P... 41 0.001
At5g20890.1 68418.m02481 chaperonin, putative similar to SWISS-P... 34 0.11
At3g59120.1 68416.m06591 DC1 domain-containing protein contains ... 34 0.11
At1g80010.1 68414.m09362 far-red impaired responsive protein, pu... 30 1.3
At1g14280.1 68414.m01693 phytochrome kinase, putative contains s... 30 1.3
At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kina... 30 1.7
At4g26780.1 68417.m03857 co-chaperone grpE family protein simila... 29 2.3
At4g20880.1 68417.m03028 ethylene-responsive nuclear protein / e... 29 2.3
At1g20740.1 68414.m02598 expressed protein ; expression supporte... 29 2.3
At4g33240.1 68417.m04731 phosphatidylinositol-4-phosphate 5-kina... 29 3.0
At1g20760.1 68414.m02600 calcium-binding EF hand family protein ... 28 7.0
At3g14270.1 68416.m01806 phosphatidylinositol-4-phosphate 5-kina... 27 9.3
At3g03960.1 68416.m00415 chaperonin, putative similar to SWISS-P... 27 9.3
At1g48570.1 68414.m05431 zinc finger (Ran-binding) family protei... 27 9.3
At1g42980.1 68414.m04948 formin homology 2 domain-containing pro... 27 9.3
>At5g16070.1 68418.m01878 chaperonin, putative similar to
SWISS-PROT:P80317 T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 126 bits (303), Expect = 2e-29
Identities = 54/84 (64%), Positives = 70/84 (83%)
Frame = +3
Query: 258 MKHKTATETVLVKGLVMDHGARHPDMPKRVENAYILTCNVSLEYEKTEVNSGFFYKSAED 437
M+HK +T LV+GLV+DHG+RHPDM +R EN +ILTCNVSLEYEK+E+N+GFFY +AE
Sbjct: 199 MRHKFDVDTRLVEGLVLDHGSRHPDMKRRAENCHILTCNVSLEYEKSEINAGFFYSNAEQ 258
Query: 438 REKLVAAEREFIDQRVRKIVALKK 509
RE +V AER +D+RV+KI+ LKK
Sbjct: 259 REAMVTAERRSVDERVKKIIELKK 282
Score = 95.9 bits (228), Expect = 2e-20
Identities = 49/69 (71%), Positives = 55/69 (79%)
Frame = +2
Query: 503 QKKLCDGTDNTFVVINQKGIDPLSLDAFAKEGIIGLRRAKRRNMERLALACGGGPLLTLV 682
+KK+C DN FVVINQKGIDP SLD A+EGIIGLRRAKRRNMERL LAC GG + V
Sbjct: 281 KKKVCGDNDN-FVVINQKGIDPPSLDLLAREGIIGLRRAKRRNMERLVLAC-GGEAVNSV 338
Query: 683 DDLTEDALG 709
DDLT ++LG
Sbjct: 339 DDLTPESLG 347
Score = 88.2 bits (209), Expect = 5e-18
Identities = 43/89 (48%), Positives = 64/89 (71%), Gaps = 4/89 (4%)
Frame = +1
Query: 1 ISEGLHPRIITEGFDIARNKSLEVLESMKIPI----EIARENLVDVARTSLKTKVHPSLA 168
I EG+HPR++ +GF+IA+ +L+ L++ K P+ E+ +E L VART+L+TK++ LA
Sbjct: 109 IDEGMHPRVLVDGFEIAKRATLQFLDNFKTPVVMGDEVDKEILKMVARTTLRTKLYEGLA 168
Query: 169 DVLTDACVDAVLTIRTPGKPVDLHMVEIM 255
D LTD V++VL IR P + +DL MVEIM
Sbjct: 169 DQLTDIVVNSVLCIRKPEEAIDLFMVEIM 197
>At3g02530.1 68416.m00241 chaperonin, putative similar to
SWISS-PROT:P80317- T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 123 bits (297), Expect = 1e-28
Identities = 53/83 (63%), Positives = 69/83 (83%)
Frame = +3
Query: 258 MKHKTATETVLVKGLVMDHGARHPDMPKRVENAYILTCNVSLEYEKTEVNSGFFYKSAED 437
M+HK +T LV+GLV+DHG+RHPDM +R EN +ILTCNVSLEYEK+E+N+GFFY +AE
Sbjct: 199 MRHKFDVDTRLVEGLVLDHGSRHPDMKRRAENCHILTCNVSLEYEKSEINAGFFYSNAEQ 258
Query: 438 REKLVAAEREFIDQRVRKIVALK 506
RE +V AER +D+RV+KI+ LK
Sbjct: 259 REAMVTAERRSVDERVQKIIELK 281
Score = 98.7 bits (235), Expect = 3e-21
Identities = 47/69 (68%), Positives = 54/69 (78%)
Frame = +2
Query: 503 QKKLCDGTDNTFVVINQKGIDPLSLDAFAKEGIIGLRRAKRRNMERLALACGGGPLLTLV 682
+ K+C G DN+FV++NQKGIDP SLD A+EGII LRRAKRRNMERL LAC GG + V
Sbjct: 281 KNKVCAGNDNSFVILNQKGIDPPSLDLLAREGIIALRRAKRRNMERLVLAC-GGEAVNSV 339
Query: 683 DDLTEDALG 709
DDLT D LG
Sbjct: 340 DDLTPDCLG 348
Score = 89.0 bits (211), Expect = 3e-18
Identities = 44/89 (49%), Positives = 64/89 (71%), Gaps = 4/89 (4%)
Frame = +1
Query: 1 ISEGLHPRIITEGFDIARNKSLEVLESMKIPI----EIARENLVDVARTSLKTKVHPSLA 168
I EG+HPR++ +GF+IA+ +L+ L++ K P+ E +E L VART+L+TK++ LA
Sbjct: 109 IDEGMHPRVLVDGFEIAKRATLQFLDTFKTPVVMGDEPDKEILKMVARTTLRTKLYEGLA 168
Query: 169 DVLTDACVDAVLTIRTPGKPVDLHMVEIM 255
D LTD V++VL IR P +P+DL MVEIM
Sbjct: 169 DQLTDIVVNSVLCIRKPQEPIDLFMVEIM 197
>At3g18190.1 68416.m02314 chaperonin, putative similar to
SWISS-PROT:P50991- T-complex protein 1, delta subunit
(TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 536
Score = 63.3 bits (147), Expect = 2e-10
Identities = 32/89 (35%), Positives = 57/89 (64%), Gaps = 3/89 (3%)
Frame = +1
Query: 1 ISEGLHPRIITEGFDIARNKSLEVLESMKIPIEIA-RENLVDVARTSLKTKVHPSLADVL 177
++ G+HP +I++ A K++++L +M +P+E+ R++LV A TSL +KV + +L
Sbjct: 120 LTNGIHPTVISDSLHKACGKAIDILTAMAVPVELTDRDSLVKSASTSLNSKVVSQYSTLL 179
Query: 178 TDACVDAVLTIRTPGKP--VDLHMVEIMR 258
VDAVL++ P KP VDL ++I++
Sbjct: 180 APLAVDAVLSVIDPEKPEIVDLRDIKIVK 208
Score = 39.5 bits (88), Expect = 0.002
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = +3
Query: 270 TATETVLVKGLVMDHG-ARHPDMPKRVENAYILTCNVSLEYEKTEVNSGFFYKSAEDREK 446
T +T VKGLV D +R P RVENA I + KT++ ++
Sbjct: 213 TVDDTHTVKGLVFDKKVSRAAGGPTRVENAKIAVIQFQISPPKTDIEQSIVVSDYTQMDR 272
Query: 447 LVAAEREFIDQRVRKIVA 500
++ ER +I ++KI A
Sbjct: 273 ILKEERNYILGMIKKIKA 290
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 44.0 bits (99), Expect = 1e-04
Identities = 21/71 (29%), Positives = 37/71 (52%)
Frame = +3
Query: 279 ETVLVKGLVMDHGARHPDMPKRVENAYILTCNVSLEYEKTEVNSGFFYKSAEDREKLVAA 458
+T L+ G+++D HP MPK++E+A+I E K + + E E L
Sbjct: 141 DTELIYGILIDKDMSHPQMPKQIEDAHIAILTCPFEPPKPKTKHKVDIDTVEKFETLRKQ 200
Query: 459 EREFIDQRVRK 491
E+++ D+ V+K
Sbjct: 201 EQQYFDEMVQK 211
Score = 36.3 bits (80), Expect = 0.020
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Frame = +1
Query: 1 ISEGLHPRIITEGFDIARNKSLEVLE--SMKIPIEIAR-ENLVDVARTSLKTKVHPSLAD 171
+ G+HP I EG+++A ++E LE + K ++ E LV T+L +K+
Sbjct: 44 LDRGIHPIRIAEGYEMASRVAVEHLERIAQKFEFDVNNYEPLVQTCMTTLSSKIVNRCKR 103
Query: 172 VLTDACVDAVLTIR-TPGKPVDLHMVEI 252
L + V AVL + + V+L ++++
Sbjct: 104 SLAEIAVKAVLAVADLERRDVNLDLIKV 131
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 44.0 bits (99), Expect = 1e-04
Identities = 21/71 (29%), Positives = 37/71 (52%)
Frame = +3
Query: 279 ETVLVKGLVMDHGARHPDMPKRVENAYILTCNVSLEYEKTEVNSGFFYKSAEDREKLVAA 458
+T L+ G+++D HP MPK++E+A+I E K + + E E L
Sbjct: 217 DTELIYGILIDKDMSHPQMPKQIEDAHIAILTCPFEPPKPKTKHKVDIDTVEKFETLRKQ 276
Query: 459 EREFIDQRVRK 491
E+++ D+ V+K
Sbjct: 277 EQQYFDEMVQK 287
Score = 36.3 bits (80), Expect = 0.020
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Frame = +1
Query: 1 ISEGLHPRIITEGFDIARNKSLEVLE--SMKIPIEIAR-ENLVDVARTSLKTKVHPSLAD 171
+ G+HP I EG+++A ++E LE + K ++ E LV T+L +K+
Sbjct: 120 LDRGIHPIRIAEGYEMASRVAVEHLERIAQKFEFDVNNYEPLVQTCMTTLSSKIVNRCKR 179
Query: 172 VLTDACVDAVLTIR-TPGKPVDLHMVEI 252
L + V AVL + + V+L ++++
Sbjct: 180 SLAEIAVKAVLAVADLERRDVNLDLIKV 207
>At5g26360.1 68418.m03151 chaperonin, putative similar to
SWISS-PROT:P50143- T-complex protein 1, gamma subunit
(TCP-1-gamma) [Xenopus laevis]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 555
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/57 (33%), Positives = 34/57 (59%)
Frame = +2
Query: 539 VVINQKGIDPLSLDAFAKEGIIGLRRAKRRNMERLALACGGGPLLTLVDDLTEDALG 709
+VI +KG+ L+ F+K G+ +RR ++ + R+A AC G ++ D+L E +G
Sbjct: 289 LVITEKGLSDLACHYFSKAGVSAIRRLRKTDNNRIAKAC-GAVIVNRPDELQESDIG 344
Score = 33.1 bits (72), Expect = 0.19
Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Frame = +3
Query: 279 ETVLVKGLVMDHGARHPD-MPKRVENAYILTCNVSLEYEKTEVNSGFFYKSAEDREKLVA 455
++ ++KG++ + P M +++ N I+ + LEY+K E + ED E L+
Sbjct: 210 DSEVLKGVMFNKDVVAPGKMKRKIVNPRIILLDCPLEYKKGENQTNAELVREEDWEVLLK 269
Query: 456 AEREFIDQRVRKIVALKKNYATVLTILSSLS 548
E E+I+ +I+ K + LS L+
Sbjct: 270 LEEEYIENICVQILKFKPDLVITEKGLSDLA 300
>At5g20890.1 68418.m02481 chaperonin, putative similar to
SWISS-PROT:P78371- T-complex protein 1, beta subunit
(TCP-1-beta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 527
Score = 33.9 bits (74), Expect = 0.11
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +3
Query: 336 PKRVENAYILTCNVSLEYEKTEV-NSGFFYKSAEDREKLVAAEREFIDQRVRKIV 497
PKR+ENA IL N +++ +K ++ + S ++ AE+E + +V+KI+
Sbjct: 224 PKRIENANILVANTAMDTDKVKIYGARVRVDSMTKVAEIEGAEKEKMKDKVKKII 278
Score = 27.9 bits (59), Expect = 7.0
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +2
Query: 476 SKSKKDRCSQKKLCDGTDNTFVVINQKGIDPLSLDAFAKEGIIGLRRAKRRNMERLALAC 655
++ +K + KK+ N FV N++ I + FA GI+ + A +ERL L
Sbjct: 265 AEKEKMKDKVKKIIGHGINCFV--NRQLIYNFPEELFADAGILAIEHADFEGIERLGLVT 322
Query: 656 GG 661
GG
Sbjct: 323 GG 324
>At3g59120.1 68416.m06591 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 602
Score = 33.9 bits (74), Expect = 0.11
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -3
Query: 238 ADQQVCLEFEW*VPHQRKHQLAHLPSLG 155
+ + +CL ++ PH +KH+ HLPS+G
Sbjct: 565 SSRPICLTCQYHCPHHKKHEKTHLPSIG 592
>At1g80010.1 68414.m09362 far-red impaired responsive protein,
putative similar to far-red impaired response protein
FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282
Length = 696
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -1
Query: 711 KPKASSVRSSTRVNSGPPPHARARR-SILRRFALRSPIIPSLAKASS 574
K +SS +T+ N PPPH + R + R AL +P P+L + S
Sbjct: 175 KKSSSSASPATKTNPEPPPHVQVRTIKLYRTLALDTP--PALGTSLS 219
>At1g14280.1 68414.m01693 phytochrome kinase, putative contains
similarity to Swiss-Prot:Q9SWI1 phytochrome kinase
substrate 1 [Arabidopsis thaliana]
Length = 442
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 482 SKKDRCSQKKLCDGTDNTFVVINQKGIDPLSLDAFAKE 595
SK+D +QK L G N + IN+K + L + F E
Sbjct: 44 SKEDALTQKNLMSGITNDVLGINKKASEDLEISVFGAE 81
>At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kinase
family protein low similarity to phosphatidylinositol
3,5-kinase [Candida albicans] GI:14571648; contains Pfam
profile PF01504: Phosphatidylinositol-4-phosphate
5-Kinase
Length = 1648
Score = 29.9 bits (64), Expect = 1.7
Identities = 22/88 (25%), Positives = 38/88 (43%)
Frame = +3
Query: 279 ETVLVKGLVMDHGARHPDMPKRVENAYILTCNVSLEYEKTEVNSGFFYKSAEDREKLVAA 458
E++L++G+V H M + +N ++ SLEY++ F L+
Sbjct: 396 ESILIRGIVCSKNITHKRMISQYKNPRVMLLAGSLEYQRVAGQLASF-------NTLLQQ 448
Query: 459 EREFIDQRVRKIVALKKNYATVLTILSS 542
E E + + KI +L+ N V SS
Sbjct: 449 ENEHMKAIIAKIESLRPNVLLVEKSASS 476
>At4g26780.1 68417.m03857 co-chaperone grpE family protein similar
to chaperone GrpE type 2 [Nicotiana tabacum] GI:3851640;
contains Pfam profile PF01025: co-chaperone GrpE
Length = 327
Score = 29.5 bits (63), Expect = 2.3
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Frame = +3
Query: 426 SAEDREKLVAAEREFIDQRVRKIVALK----KNYATVLTILSSLSTKKESTPCHWMLLPK 593
SA+D KLVA + E + ++ +I LK + YA + ++ E+T + +
Sbjct: 140 SADDLVKLVAEKEELLSEKEEEIKQLKDKVLRTYAEMENVMDRTRRDAENTKKYAVQNFA 199
Query: 594 KVLLDYAEQNG 626
K LLD A+ G
Sbjct: 200 KSLLDVADNLG 210
>At4g20880.1 68417.m03028 ethylene-responsive nuclear protein /
ethylene-regulated nuclear protein (ERT2) identical to
ethylene-regulated nuclear protein [Arabidopsis
thaliana] gi|2765442|emb|CAA75349
Length = 405
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = -1
Query: 705 KASSVRSSTRVNSGPPPHARARRSILRRFALRSPIIPSLAKASS 574
K + ++ TRV S PPPH S+ RR +L S + P+L S
Sbjct: 61 KNNKAQTETRVLSPPPPH----MSLQRRMSLPSKLDPALVTEDS 100
>At1g20740.1 68414.m02598 expressed protein ; expression supported
by MPSS
Length = 266
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +1
Query: 40 FDIARNKSLEVLESMKIPIEIARENLVDVARTSLKTKVHPSLADVLTDA 186
F+ A +++LE LES + P + A+ + D R H +AD+ +++
Sbjct: 85 FNGAESRTLEFLESNESPEDFAKSSAADYIRNKNTAAFHLIVADIASNS 133
>At4g33240.1 68417.m04731 phosphatidylinositol-4-phosphate 5-kinase
family protein similar to SP|Q9Z1T6 FYVE
finger-containing phosphoinositide kinase (EC 2.7.1.68)
(1- phosphatidylinositol-4-phosphate kinase) (PIP5K)
(PtdIns(4)P-5-kinase) {Mus musculus}; contains Pfam
profiles PF01504: Phosphatidylinositol-4-phosphate
5-Kinase, PF01363: FYVE zinc finger, PF00118:
TCP-1/cpn60 chaperonin family
Length = 1756
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +3
Query: 276 TETVLVKGLVMDHGARHPDMPKRVENAYILTCNVSLEYEK 395
+E+++VKG+V H M ++E +L +LEY++
Sbjct: 438 SESMVVKGVVCKKNVAHRRMTSKIEKPRLLILGGALEYQR 477
>At1g20760.1 68414.m02600 calcium-binding EF hand family protein
contains INTERPRO:IPR002048 calcium-binding EF-hand
domain
Length = 1019
Score = 27.9 bits (59), Expect = 7.0
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Frame = +3
Query: 348 ENAYILTCNVSLEYEKTEVNSGFFYKSAEDREKLVAAEREFIDQRVRKIVALK--KNYAT 521
+NAY + L+Y +T++ YKS D +ER D+R + +A K + Y
Sbjct: 545 QNAY-MDSREKLDYYRTKMQDIVLYKSRCDNRLNEISERASADKREAETLAKKYEEKYKQ 603
Query: 522 VLTILSSLSTKK 557
V I S L+ ++
Sbjct: 604 VAEIGSKLTIEE 615
>At3g14270.1 68416.m01806 phosphatidylinositol-4-phosphate 5-kinase
family protein similar to SP|Q9Z1T6 FYVE
finger-containing phosphoinositide kinase (EC 2.7.1.68)
(1- phosphatidylinositol-4-phosphate kinase) (PIP5K)
(PtdIns(4)P-5-kinase) {Mus musculus}; contains Pfam
profiles PF01504: Phosphatidylinositol-4-phosphate
5-Kinase, PF01363: FYVE zinc finger, PF00118:
TCP-1/cpn60 chaperonin family
Length = 1791
Score = 27.5 bits (58), Expect = 9.3
Identities = 20/82 (24%), Positives = 37/82 (45%)
Frame = +3
Query: 279 ETVLVKGLVMDHGARHPDMPKRVENAYILTCNVSLEYEKTEVNSGFFYKSAEDREKLVAA 458
++++VKG+V + M ++E A +L LEY++ F + L+
Sbjct: 452 DSMVVKGVVCKKNVVNRRMSTKIEKARLLILGGGLEYQRVSNQLSSF-------DTLLQQ 504
Query: 459 EREFIDQRVRKIVALKKNYATV 524
E++ + V KI A + N V
Sbjct: 505 EKDHLKMAVAKIHAERPNILLV 526
>At3g03960.1 68416.m00415 chaperonin, putative similar to
SWISS-PROT:P42932- T-complex protein 1, theta subunit
(TCP-1-theta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 549
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 1 ISEGLHPRIITEGFDIARNKSLEVLESM 84
I GLHP I G+ A +K++E+LE +
Sbjct: 119 IRMGLHPSEIISGYTKAVSKAVEILEQL 146
>At1g48570.1 68414.m05431 zinc finger (Ran-binding) family protein
contains Pfam domain, PF00641: Zn-finger in Ran binding
protein and others
Length = 455
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -1
Query: 654 HARARRSILRRFAL-RSPIIPSLAKASSDKGSIP 556
H ARR +L P+IP+L K SS + S+P
Sbjct: 206 HESARRLLLELVEFSEKPLIPALPKPSSKESSLP 239
>At1g42980.1 68414.m04948 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains Pfam
profile PF02181: Formin Homology 2 Domain
Length = 299
Score = 27.5 bits (58), Expect = 9.3
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Frame = +3
Query: 351 NAYILTCNVSLEY-EKTEVNSGF---FYKSAEDREKLVAAEREFIDQRVRKI 494
N+YI + + E T + + F FYKS E+ E+ AE+E +++R I
Sbjct: 242 NSYIAEYPSGVRFKEATNILTRFVETFYKSREEIERQAEAEKEILEKRKMNI 293
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,759,298
Number of Sequences: 28952
Number of extensions: 293554
Number of successful extensions: 807
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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