Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0305
         (645 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    24   1.2  
DQ855502-1|ABH88189.1|  126|Tribolium castaneum chemosensory pro...    23   2.8  
DQ855495-1|ABH88182.1|  126|Tribolium castaneum chemosensory pro...    23   2.8  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    22   3.8  
AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.           21   6.6  
DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory pro...    21   8.7  

>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -1

Query: 267 GGVQLASLTHHTRTFHCCLYGFDPQRTVHWP 175
           G + L SL  +  T H    G +P+R + +P
Sbjct: 142 GQIMLNSLHKYKPTVHLVRVGTEPRRVISFP 172


>DQ855502-1|ABH88189.1|  126|Tribolium castaneum chemosensory
           protein 16 protein.
          Length = 126

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 328 VRGISHAAVENSPSW 284
           VR + H  +EN P+W
Sbjct: 83  VRKVIHHLIENKPNW 97


>DQ855495-1|ABH88182.1|  126|Tribolium castaneum chemosensory
           protein 9 protein.
          Length = 126

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 328 VRGISHAAVENSPSW 284
           VR + H  +EN P+W
Sbjct: 83  VRKVIHHLIENKPNW 97


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -1

Query: 282 PNTHFGGVQLASLTH 238
           P T F G QLA L H
Sbjct: 231 PRTAFSGAQLARLKH 245


>AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.
          Length = 257

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 191 EQSIGPSTDIWEDNRTECRPI 129
           EQS+ P T   +D ++E  P+
Sbjct: 202 EQSLSPDTVFGDDGKSEDVPV 222


>DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory
           protein 7 protein.
          Length = 127

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -1

Query: 414 DQLSSSCTPYNVRGRTASSVKPSHSSQMR 328
           D LSS CT  N + +  +     H +Q R
Sbjct: 68  DALSSGCTKCNQKQKETAEKVIRHLTQKR 96


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,633
Number of Sequences: 336
Number of extensions: 3825
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16552695
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)