Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0305
         (645 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.10 |||tspO homolog|Schizosaccharomyces pombe|chr 2|||Manual    63   4e-11
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    27   1.8  
SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyc...    27   3.1  
SPBC4C3.07 |||translation initiation factor eIF3f|Schizosaccharo...    26   4.0  
SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces pomb...    26   4.0  
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ...    25   9.3  
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos...    25   9.3  

>SPBC725.10 |||tspO homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 162

 Score = 62.9 bits (146), Expect = 4e-11
 Identities = 31/78 (39%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
 Frame = +2

Query: 245 KEASWTPPKWVFGPAWTVLYSSMGYASYLIWE-ECDGFTEDAVLPLTLYGVQLLLNWSWT 421
           K+  + PP   FGPAWT+LY +MGYAS+L ++ +    T  +     LY  QL  N++W 
Sbjct: 43  KQPKFHPPASAFGPAWTLLYLTMGYASHLAYKADPLMITNASRNGSILYIAQLAANFAWM 102

Query: 422 PIFFGLKDFKLAFIEISV 475
           P+F+GL   KLA  ++ +
Sbjct: 103 PLFYGLAKPKLALADLGI 120



 Score = 31.9 bits (69), Expect = 0.081
 Identities = 14/19 (73%), Positives = 14/19 (73%)
 Frame = +1

Query: 526 TAGLLLIPYLAWLGYASSL 582
           TA   LIPYLAWLGYA  L
Sbjct: 138 TASKWLIPYLAWLGYAGYL 156


>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -1

Query: 420 VQDQLSSSCTPYNVRGRTASSVKPSHSSQMR 328
           +Q  LSS  T  NVR + A+ V+PS S   R
Sbjct: 369 IQSTLSSRTTTGNVRTKAANIVRPSSSINRR 399


>SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 9/40 (22%), Positives = 23/40 (57%)
 Frame = +2

Query: 323 SYLIWEECDGFTEDAVLPLTLYGVQLLLNWSWTPIFFGLK 442
           ++++ ++C+GF+  + L         L+++ W P+ +G K
Sbjct: 211 NFILGQDCNGFSLGSFLVRRSDWTSRLMDFLWDPVVYGQK 250


>SPBC4C3.07 |||translation initiation factor
           eIF3f|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 10/37 (27%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
 Frame = -1

Query: 474 TEISMNASLKSFNPKKIGVQDQLSSSC----TPYNVR 376
           T++S   ++K++    +G+ ++L+ SC    TP+ +R
Sbjct: 148 TDVSSPLAIKTYVSSPVGITERLADSCAFVPTPFTIR 184


>SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 510

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = -3

Query: 268 WGSPAGFFNSSYQDFSLLSLRI*PAKNSPLAHPPTFGRIIEPS 140
           W    GF N S Q F L      P+ +   +   TF RI+E S
Sbjct: 384 WNGAVGFQNQSAQPFYLPGYSDQPSGSYVSSRNLTFARIVEAS 426


>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 797

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 197 RKEQSIGPSTDIWEDNRTECRPISHYEIF*NGLWVK 90
           R+E S     D+  D+  E + ++HYE F   +W K
Sbjct: 405 REESSTFMDIDVEFDDELEGQSLTHYESFMMFVWKK 440


>SPAC14C4.13 |rad17||RFC related checkpoint protein
           Rad17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 606

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 17/54 (31%), Positives = 21/54 (38%)
 Frame = +3

Query: 270 SGYLVQLGLFSTAAWDMPLTSSGRNVMVLLKMQSYLSHCTEYSCYSTGLGLLFS 431
           SG + + GLF         T    NV  LL +   LSH   YS     +   FS
Sbjct: 483 SGSVFRYGLFENYVDSCVTTDEAFNVCDLLSISDCLSHDFPYSYTGDEISTWFS 536


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,906,126
Number of Sequences: 5004
Number of extensions: 62037
Number of successful extensions: 168
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)