Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0305
         (645 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0431 - 10152228-10152352,10152688-10152919,10153602-101538...    30   1.4  
03_02_0804 + 11374219-11374221,11374326-11374473,11374556-113746...    29   4.2  
01_05_0721 + 24594815-24594834,24595207-24595313,24595417-245954...    28   5.5  
04_04_0122 - 22918146-22918220,22918455-22918496,22918586-229186...    28   7.3  
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162...    27   9.7  
01_06_0061 - 26071984-26072343,26072792-26073139,26073228-260733...    27   9.7  

>02_02_0431 -
           10152228-10152352,10152688-10152919,10153602-10153808,
           10153915-10154034,10154114-10154260,10155080-10155147,
           10155502-10155667,10156765-10156914,10157219-10157335,
           10158177-10158281,10159050-10159147,10159594-10159763,
           10161489-10161511,10161927-10162006,10162191-10162259,
           10163198-10163442,10163614-10163810
          Length = 772

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +3

Query: 234 YDELKKPAGLPQSGYLVQLGLFSTAAWDMPLTSSG 338
           Y E    AG P+  Y VQ  +FS A+ ++ LT++G
Sbjct: 279 YSEKNWGAGFPRKWYWVQCNVFSGASGEVALTAAG 313


>03_02_0804 +
           11374219-11374221,11374326-11374473,11374556-11374629,
           11374736-11375233,11375749-11376093,11376178-11376390,
           11376669-11377457,11377686-11377769
          Length = 717

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
 Frame = -3

Query: 346 TFLPDEVRGISHAAVENSPSWTK-YPLWGSPAGFFNSSYQ---DFS 221
           T++P  V G+  + V +   +   Y L GSP+GFF  S Q   DFS
Sbjct: 99  TYMPGMVMGVDGSFVGSQQYFASPYQLPGSPSGFFPMSIQPTTDFS 144


>01_05_0721 +
           24594815-24594834,24595207-24595313,24595417-24595472,
           24595562-24595810,24595871-24596077,24596157-24596243,
           24596331-24596426,24596500-24596715,24596908-24597090,
           24597222-24597449
          Length = 482

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/41 (41%), Positives = 25/41 (60%)
 Frame = -3

Query: 415 RPVE*QLYSVQCER*DCIFSKTITFLPDEVRGISHAAVENS 293
           R +E  + SV  ER   +FS T+   P+EVR ISH A++ +
Sbjct: 188 RDIERIIASVPKERQTLLFSATV---PEEVRQISHIAMKKN 225


>04_04_0122 -
           22918146-22918220,22918455-22918496,22918586-22918642,
           22918784-22918844,22919219-22919280,22919372-22919485,
           22919565-22919636,22919824-22919874,22919990-22920112,
           22921261-22921383
          Length = 259

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = -3

Query: 343 FLPDEVRGISHAAVENSPSWTKYPLWGSPAGFFNSSYQD 227
           F  ++ R  +H A++      K  LW +P  +FN+ +++
Sbjct: 187 FNSEKNRSFAHGAMDEVADVIKEDLWPNPLKYFNNEFEE 225


>02_01_0246 +
           1617326-1617367,1618903-1624419,1625040-1625498,
           1625603-1625887,1626016-1626030,1626339-1626419,
           1626909-1627322,1627423-1627719,1627801-1629864
          Length = 3057

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = -3

Query: 469 DLNECQLEVLQSEENRSPRPVE 404
           ++ E QL+ L+SEE +SP P+E
Sbjct: 662 NIAELQLQGLESEEIKSPEPIE 683


>01_06_0061 -
           26071984-26072343,26072792-26073139,26073228-26073371,
           26073454-26073723,26075019-26075825
          Length = 642

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = +1

Query: 532 GLLLIPYLAWLGYASSL 582
           G+LL+  LAWLG ASSL
Sbjct: 565 GILLVIVLAWLGAASSL 581


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,024,275
Number of Sequences: 37544
Number of extensions: 412755
Number of successful extensions: 945
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)