Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0305
         (645 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7579| Best HMM Match : HEAT (HMM E-Value=0.0096)                    29   4.3  
SB_24452| Best HMM Match : PKD_channel (HMM E-Value=0)                 28   7.5  
SB_9261| Best HMM Match : Chitin_synth_2 (HMM E-Value=2.7e-07)         28   7.5  
SB_17671| Best HMM Match : 7tm_1 (HMM E-Value=0.00083)                 27   9.9  

>SB_7579| Best HMM Match : HEAT (HMM E-Value=0.0096)
          Length = 1276

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
 Frame = +1

Query: 265 PKVGIWSSLDCSLQQH-GICLLPH--LGGM*WFY*RCSPTSHIVRSTAATQLVLDSYFLR 435
           P+  + S+LD  +  H  + LLP   L  + W + RCS       S   ++ +L+SY L 
Sbjct: 721 PEKAMLSALDTFITLHRNLSLLPRPILKNLLWLFARCSFLHKARPSLTTSETILESYVLA 780

Query: 436 IE 441
           ++
Sbjct: 781 LK 782


>SB_24452| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 1433

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -3

Query: 346  TFLPDEVRGISHAAVENSPSWTKYPLWGSPAGFFNSSYQDFS-LLSLR 206
            T  P   R  S A ++N PSW  + L+G      +  YQ  S +++LR
Sbjct: 1025 TLCPKPWRYTSSAQLDNLPSWGYFTLYGGGGYVASLGYQSSSAIVALR 1072


>SB_9261| Best HMM Match : Chitin_synth_2 (HMM E-Value=2.7e-07)
          Length = 2435

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = +1

Query: 469  LSAVRGSSGNDTVIGSVNKTAGLLLIPYLAWLGYASSLSYYIWKNN 606
            +  + G+S      G  +    ++ +    W+G   S  YY+WK+N
Sbjct: 1014 VQGICGTSVIPVPCGPTDNMKYVVAVGLFIWVGQFISTGYYVWKSN 1059


>SB_17671| Best HMM Match : 7tm_1 (HMM E-Value=0.00083)
          Length = 585

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = -2

Query: 308 CCREQSKLDQIPTLGESSWLL*LIIPGLFTVVFTDLTRKEQSIGPSTDIWEDNRTE 141
           C       +++ T G SS +L  ++ G+  V F   +     +GP   +  DNRT+
Sbjct: 154 CSSHSRSRERLTTGGRSSVVLASLVLGIALVAFIIASLPYLGLGPGGAVRGDNRTD 209


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,559,629
Number of Sequences: 59808
Number of extensions: 463929
Number of successful extensions: 913
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)