Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0305
         (645 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81048-2|CAB02840.1|  553|Caenorhabditis elegans Hypothetical pr...    37   0.011
Z81146-10|CAB54274.2|  796|Caenorhabditis elegans Hypothetical p...    29   2.8  
Z81146-9|CAB03528.1|  817|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z81121-2|CAB54308.2|  796|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z81121-1|CAB03351.1|  817|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z70308-14|CAB54254.2|  796|Caenorhabditis elegans Hypothetical p...    29   2.8  
Z70308-13|CAA94353.1|  817|Caenorhabditis elegans Hypothetical p...    29   2.8  
AY090019-1|AAM09088.1|  796|Caenorhabditis elegans minibrain kin...    29   2.8  
U21854-1|AAA87454.1|  310|Caenorhabditis elegans cCAF1 protein p...    29   3.7  
AL132860-28|CAB60501.1|  310|Caenorhabditis elegans Hypothetical...    29   3.7  
AF036700-4|AAV34787.1|  437|Caenorhabditis elegans Hypothetical ...    29   3.7  
AF036700-3|AAB88366.2|  479|Caenorhabditis elegans Hypothetical ...    29   3.7  
U80848-2|AAB37989.1|  574|Caenorhabditis elegans Hypothetical pr...    28   4.9  

>Z81048-2|CAB02840.1|  553|Caenorhabditis elegans Hypothetical
           protein C41G7.3 protein.
          Length = 553

 Score = 37.1 bits (82), Expect = 0.011
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = +2

Query: 242 VKEASWTPPKW-VFGPAWTVLYSSMGYASYLIWEECDGFT-EDAVLPLTLYGVQLLLNWS 415
           +K+ +W P    V+     +  S +GYASYL+++   GF   D  L L LYG  + L  +
Sbjct: 425 LKKPNWAPKDVRVYSAVDLLTLSPLGYASYLVYKNGGGFDYNDTKLALGLYGASVTLAVA 484

Query: 416 WTPI 427
             PI
Sbjct: 485 TIPI 488



 Score = 33.9 bits (74), Expect = 0.099
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = +1

Query: 517 VNKTAGLLLIPYLAWLGYASSLSYYIWKNNPKPVK 621
           ++K AGLL++P+  W  + + L+Y I K N  P+K
Sbjct: 518 IDKKAGLLVVPFAVWTAFYAYLAYSIKKEN-DPIK 551


>Z81146-10|CAB54274.2|  796|Caenorhabditis elegans Hypothetical
           protein F49E11.1c protein.
          Length = 796

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
 Frame = -1

Query: 465 SMNASLKSFNPKKIGV--QDQLSSSCTPYNVRGRTASSVKPSHSSQMR*EAYPMLL*RTV 292
           S   + +S+  + I V  Q Q   S    + +GR+ S   P+ ++ +R    P +     
Sbjct: 6   SFTRNSRSYGQQPIDVTQQGQRDRSVMSLDAQGRSVSHECPTSTTLVRQLYLPQIPQSAS 65

Query: 291 QAGPNTHFGGVQLASLTHHTRTFH 220
            A   T F G   +S  HH   +H
Sbjct: 66  FAAAPTSFSGASSSSSNHHHPVYH 89


>Z81146-9|CAB03528.1|  817|Caenorhabditis elegans Hypothetical
           protein F49E11.1b protein.
          Length = 817

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
 Frame = -1

Query: 465 SMNASLKSFNPKKIGV--QDQLSSSCTPYNVRGRTASSVKPSHSSQMR*EAYPMLL*RTV 292
           S   + +S+  + I V  Q Q   S    + +GR+ S   P+ ++ +R    P +     
Sbjct: 6   SFTRNSRSYGQQPIDVTQQGQRDRSVMSLDAQGRSVSHECPTSTTLVRQLYLPQIPQSAS 65

Query: 291 QAGPNTHFGGVQLASLTHHTRTFH 220
            A   T F G   +S  HH   +H
Sbjct: 66  FAAAPTSFSGASSSSSNHHHPVYH 89


>Z81121-2|CAB54308.2|  796|Caenorhabditis elegans Hypothetical
           protein F49E11.1c protein.
          Length = 796

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
 Frame = -1

Query: 465 SMNASLKSFNPKKIGV--QDQLSSSCTPYNVRGRTASSVKPSHSSQMR*EAYPMLL*RTV 292
           S   + +S+  + I V  Q Q   S    + +GR+ S   P+ ++ +R    P +     
Sbjct: 6   SFTRNSRSYGQQPIDVTQQGQRDRSVMSLDAQGRSVSHECPTSTTLVRQLYLPQIPQSAS 65

Query: 291 QAGPNTHFGGVQLASLTHHTRTFH 220
            A   T F G   +S  HH   +H
Sbjct: 66  FAAAPTSFSGASSSSSNHHHPVYH 89


>Z81121-1|CAB03351.1|  817|Caenorhabditis elegans Hypothetical
           protein F49E11.1b protein.
          Length = 817

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
 Frame = -1

Query: 465 SMNASLKSFNPKKIGV--QDQLSSSCTPYNVRGRTASSVKPSHSSQMR*EAYPMLL*RTV 292
           S   + +S+  + I V  Q Q   S    + +GR+ S   P+ ++ +R    P +     
Sbjct: 6   SFTRNSRSYGQQPIDVTQQGQRDRSVMSLDAQGRSVSHECPTSTTLVRQLYLPQIPQSAS 65

Query: 291 QAGPNTHFGGVQLASLTHHTRTFH 220
            A   T F G   +S  HH   +H
Sbjct: 66  FAAAPTSFSGASSSSSNHHHPVYH 89


>Z70308-14|CAB54254.2|  796|Caenorhabditis elegans Hypothetical
           protein F49E11.1c protein.
          Length = 796

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
 Frame = -1

Query: 465 SMNASLKSFNPKKIGV--QDQLSSSCTPYNVRGRTASSVKPSHSSQMR*EAYPMLL*RTV 292
           S   + +S+  + I V  Q Q   S    + +GR+ S   P+ ++ +R    P +     
Sbjct: 6   SFTRNSRSYGQQPIDVTQQGQRDRSVMSLDAQGRSVSHECPTSTTLVRQLYLPQIPQSAS 65

Query: 291 QAGPNTHFGGVQLASLTHHTRTFH 220
            A   T F G   +S  HH   +H
Sbjct: 66  FAAAPTSFSGASSSSSNHHHPVYH 89


>Z70308-13|CAA94353.1|  817|Caenorhabditis elegans Hypothetical
           protein F49E11.1b protein.
          Length = 817

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
 Frame = -1

Query: 465 SMNASLKSFNPKKIGV--QDQLSSSCTPYNVRGRTASSVKPSHSSQMR*EAYPMLL*RTV 292
           S   + +S+  + I V  Q Q   S    + +GR+ S   P+ ++ +R    P +     
Sbjct: 6   SFTRNSRSYGQQPIDVTQQGQRDRSVMSLDAQGRSVSHECPTSTTLVRQLYLPQIPQSAS 65

Query: 291 QAGPNTHFGGVQLASLTHHTRTFH 220
            A   T F G   +S  HH   +H
Sbjct: 66  FAAAPTSFSGASSSSSNHHHPVYH 89


>AY090019-1|AAM09088.1|  796|Caenorhabditis elegans minibrain kinase
           2 protein.
          Length = 796

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
 Frame = -1

Query: 465 SMNASLKSFNPKKIGV--QDQLSSSCTPYNVRGRTASSVKPSHSSQMR*EAYPMLL*RTV 292
           S   + +S+  + I V  Q Q   S    + +GR+ S   P+ ++ +R    P +     
Sbjct: 6   SFTRNSRSYGQQPIDVTQQGQRDRSVMSLDAQGRSVSHECPTSTTLVRQLYLPQIPQSAS 65

Query: 291 QAGPNTHFGGVQLASLTHHTRTFH 220
            A   T F G   +S  HH   +H
Sbjct: 66  FAAAPTSFSGASSSSSNHHHPVYH 89


>U21854-1|AAA87454.1|  310|Caenorhabditis elegans cCAF1 protein
           protein.
          Length = 310

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +1

Query: 448 QAGIH*DLSAVRGSSGNDTVIGSVNKTAGLLLIPYLAWLGYASSLSY-YIWKN 603
           QAGI  D + ++ +     V G +  T+GL+  P + WL ++S   + Y+ K+
Sbjct: 129 QAGI--DFTLLQNNGIPTAVFGELLTTSGLITDPRITWLTFSSGYDFGYLLKS 179


>AL132860-28|CAB60501.1|  310|Caenorhabditis elegans Hypothetical
           protein Y56A3A.20 protein.
          Length = 310

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +1

Query: 448 QAGIH*DLSAVRGSSGNDTVIGSVNKTAGLLLIPYLAWLGYASSLSY-YIWKN 603
           QAGI  D + ++ +     V G +  T+GL+  P + WL ++S   + Y+ K+
Sbjct: 129 QAGI--DFTLLQNNGIPTAVFGELLTTSGLITDPRITWLTFSSGYDFGYLLKS 179


>AF036700-4|AAV34787.1|  437|Caenorhabditis elegans Hypothetical
           protein M04G7.3b protein.
          Length = 437

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -1

Query: 465 SMNASLKSFNPKKIGVQDQLSSSCTPYN 382
           S+N+S+K   P KIG+   LS+  TP N
Sbjct: 401 SLNSSMKKSLPPKIGLPHPLSAEKTPLN 428


>AF036700-3|AAB88366.2|  479|Caenorhabditis elegans Hypothetical
           protein M04G7.3a protein.
          Length = 479

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -1

Query: 465 SMNASLKSFNPKKIGVQDQLSSSCTPYN 382
           S+N+S+K   P KIG+   LS+  TP N
Sbjct: 443 SLNSSMKKSLPPKIGLPHPLSAEKTPLN 470


>U80848-2|AAB37989.1|  574|Caenorhabditis elegans Hypothetical
           protein T10H10.2 protein.
          Length = 574

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +1

Query: 496 NDTVIGSVNKTAGLLLIPYLAWLGYASSLSYYIWKNNPKPVKG 624
           NDT+ G+ +  AG L+  Y  W G+  + +   +KN  K V G
Sbjct: 45  NDTIFGAQSGAAGYLVEFYSDWCGHCRAFA-PTYKNLAKDVDG 86


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,913,530
Number of Sequences: 27780
Number of extensions: 341383
Number of successful extensions: 845
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)