BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0305 (645 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g47770.1 68415.m05963 benzodiazepine receptor-related contain... 41 8e-04 At4g32770.1 68417.m04662 tocopherol cyclase, chloroplast / vitam... 31 0.50 At3g21210.1 68416.m02680 universal stress protein (USP) family p... 30 1.5 At1g11340.1 68414.m01302 S-locus lectin protein kinase family pr... 30 1.5 At5g10480.1 68418.m01214 protein tyrosine phosphatase-like prote... 29 2.6 At5g41870.1 68418.m05098 glycoside hydrolase family 28 protein /... 28 4.6 At2g26100.1 68415.m03132 galactosyltransferase family protein co... 28 6.1 At3g62730.1 68416.m07047 expressed protein DESSICATION-RELATED P... 27 8.1 >At2g47770.1 68415.m05963 benzodiazepine receptor-related contains weak similarity to Peripheral-type benzodiazepine receptor (PBR) (PKBS) (Mitochondrial benzodiazepine receptor) (Swiss-Prot:P30536) [Homo sapiens] Length = 196 Score = 40.7 bits (91), Expect = 8e-04 Identities = 22/63 (34%), Positives = 28/63 (44%) Frame = +2 Query: 245 KEASWTPPKWVFGPAWTVLYSSMGYASYLIWEECDGFTEDAVLPLTLYGVQLLLNWSWTP 424 K +SW PP W+ MG A++L+W DG L LY Q LL W P Sbjct: 79 KSSSWIPPLWLLHTTCLASSGLMGLAAWLVW--VDGGFHKKPNALYLYLAQFLLCLVWDP 136 Query: 425 IFF 433 + F Sbjct: 137 VTF 139 >At4g32770.1 68417.m04662 tocopherol cyclase, chloroplast / vitamin E deficient 1 (VTE1) / sucrose export defective 1 (SXD1) identical to SP|Q94FY7 Tocopherol cyclase, chloroplast precursor (Vitamin E deficient 1) (Sucrose export defective 1) {Arabidopsis thaliana} Length = 488 Score = 31.5 bits (68), Expect = 0.50 Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 5/76 (6%) Frame = +3 Query: 126 ANWPALGSIILPN-----VGGWANGLFFAGQIRKDNSEKSWYDELKKPAGLPQSGYLVQL 290 A WPA + P+ GG + G G R + + Y E G P+ + VQ Sbjct: 248 AGWPAAFPVFEPHWQICMAGGLSTGWIEWGGERFEFRDAPSYSEKNWGGGFPRKWFWVQC 307 Query: 291 GLFSTAAWDMPLTSSG 338 +F A ++ LT+ G Sbjct: 308 NVFEGATGEVALTAGG 323 >At3g21210.1 68416.m02680 universal stress protein (USP) family protein / DC1 domain-containing protein contains Pfam profiles PF03107: DC1 domain, PF00582: universal stress protein family Length = 686 Score = 29.9 bits (64), Expect = 1.5 Identities = 14/49 (28%), Positives = 24/49 (48%) Frame = -3 Query: 319 ISHAAVENSPSWTKYPLWGSPAGFFNSSYQDFSLLSLRI*PAKNSPLAH 173 + H ++ S +K PL P +F ++ +DF + R P +SP H Sbjct: 186 VHHQHIKAMDSVSKQPLLFCPRAYFTNNEEDFRAMQFREPPNLSSPSFH 234 >At1g11340.1 68414.m01302 S-locus lectin protein kinase family protein contains protein kinase domain, Pfam:PF00069; contains S-locus glycoprotein family domain, Pfam:PF00954 Length = 901 Score = 29.9 bits (64), Expect = 1.5 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%) Frame = -1 Query: 234 TRTFHC-CLYGFDPQRTVHWPIHRHLGG*SNRVQAN 130 ++TF C CL GF+P+ HW + GG + + +A+ Sbjct: 369 SKTFECTCLPGFEPKFPRHWFLRDSSGGCTKKKRAS 404 >At5g10480.1 68418.m01214 protein tyrosine phosphatase-like protein, putative (PAS2) identical to PEPINO/PASTICCINO2 protein GI:24411193, GI:24575153 from [Arabidopsis thaliana]; contains Pfam:04387: protein tyrosine phosphatase-like protein Length = 221 Score = 29.1 bits (62), Expect = 2.6 Identities = 12/40 (30%), Positives = 23/40 (57%) Frame = +3 Query: 171 GWANGLFFAGQIRKDNSEKSWYDELKKPAGLPQSGYLVQL 290 GWA L+ A K+ ++ YD ++KP L Q+ ++++ Sbjct: 23 GWAQVLYLAITTLKETGYENVYDAIEKPLQLAQTAAVLEI 62 >At5g41870.1 68418.m05098 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein weak similarity to polygalacturonase PG1 [Glycine max] GI:5669846; contains PF00295: Glycosyl hydrolases family 28 Length = 449 Score = 28.3 bits (60), Expect = 4.6 Identities = 9/20 (45%), Positives = 15/20 (75%) Frame = -3 Query: 319 ISHAAVENSPSWTKYPLWGS 260 +SH ++NSP WT +P++ S Sbjct: 195 VSHVVLQNSPFWTLHPVYCS 214 >At2g26100.1 68415.m03132 galactosyltransferase family protein contains Pfam profile: PF01762 galactosyltransferase Length = 371 Score = 27.9 bits (59), Expect = 6.1 Identities = 13/29 (44%), Positives = 17/29 (58%) Frame = +1 Query: 19 FSHRYT*ISATSSLIKFHYNISSVFTHNP 105 FSHR+T S++S +YN S TH P Sbjct: 4 FSHRFTTASSSSPASPSYYNKPSSKTHKP 32 >At3g62730.1 68416.m07047 expressed protein DESSICATION-RELATED PROTEIN PCC13-62 PRECURSOR - Craterostigma plantagineum, PIR:E45509 Length = 317 Score = 27.5 bits (58), Expect = 8.1 Identities = 13/42 (30%), Positives = 19/42 (45%) Frame = +1 Query: 499 DTVIGSVNKTAGLLLIPYLAWLGYASSLSYYIWKNNPKPVKG 624 D S+N IPY+ GY ++ Y ++ N K V G Sbjct: 141 DPYANSLNYLLASYYIPYVGLTGYVGTIPYLVYFNIKKLVAG 182 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,300,489 Number of Sequences: 28952 Number of extensions: 333010 Number of successful extensions: 826 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 808 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 826 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1334473344 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -