Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0305
         (645 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g47770.1 68415.m05963 benzodiazepine receptor-related contain...    41   8e-04
At4g32770.1 68417.m04662 tocopherol cyclase, chloroplast / vitam...    31   0.50 
At3g21210.1 68416.m02680 universal stress protein (USP) family p...    30   1.5  
At1g11340.1 68414.m01302 S-locus lectin protein kinase family pr...    30   1.5  
At5g10480.1 68418.m01214 protein tyrosine phosphatase-like prote...    29   2.6  
At5g41870.1 68418.m05098 glycoside hydrolase family 28 protein /...    28   4.6  
At2g26100.1 68415.m03132 galactosyltransferase family protein co...    28   6.1  
At3g62730.1 68416.m07047 expressed protein DESSICATION-RELATED P...    27   8.1  

>At2g47770.1 68415.m05963 benzodiazepine receptor-related contains
           weak similarity to Peripheral-type benzodiazepine
           receptor (PBR) (PKBS) (Mitochondrial benzodiazepine
           receptor) (Swiss-Prot:P30536) [Homo sapiens]
          Length = 196

 Score = 40.7 bits (91), Expect = 8e-04
 Identities = 22/63 (34%), Positives = 28/63 (44%)
 Frame = +2

Query: 245 KEASWTPPKWVFGPAWTVLYSSMGYASYLIWEECDGFTEDAVLPLTLYGVQLLLNWSWTP 424
           K +SW PP W+           MG A++L+W   DG        L LY  Q LL   W P
Sbjct: 79  KSSSWIPPLWLLHTTCLASSGLMGLAAWLVW--VDGGFHKKPNALYLYLAQFLLCLVWDP 136

Query: 425 IFF 433
           + F
Sbjct: 137 VTF 139


>At4g32770.1 68417.m04662 tocopherol cyclase, chloroplast / vitamin
           E deficient 1 (VTE1) / sucrose export defective 1 (SXD1)
           identical to SP|Q94FY7 Tocopherol cyclase, chloroplast
           precursor (Vitamin E deficient 1) (Sucrose export
           defective 1) {Arabidopsis thaliana}
          Length = 488

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
 Frame = +3

Query: 126 ANWPALGSIILPN-----VGGWANGLFFAGQIRKDNSEKSWYDELKKPAGLPQSGYLVQL 290
           A WPA   +  P+      GG + G    G  R +  +   Y E     G P+  + VQ 
Sbjct: 248 AGWPAAFPVFEPHWQICMAGGLSTGWIEWGGERFEFRDAPSYSEKNWGGGFPRKWFWVQC 307

Query: 291 GLFSTAAWDMPLTSSG 338
            +F  A  ++ LT+ G
Sbjct: 308 NVFEGATGEVALTAGG 323


>At3g21210.1 68416.m02680 universal stress protein (USP) family
           protein / DC1 domain-containing protein contains Pfam
           profiles PF03107: DC1 domain, PF00582: universal stress
           protein family
          Length = 686

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = -3

Query: 319 ISHAAVENSPSWTKYPLWGSPAGFFNSSYQDFSLLSLRI*PAKNSPLAH 173
           + H  ++   S +K PL   P  +F ++ +DF  +  R  P  +SP  H
Sbjct: 186 VHHQHIKAMDSVSKQPLLFCPRAYFTNNEEDFRAMQFREPPNLSSPSFH 234


>At1g11340.1 68414.m01302 S-locus lectin protein kinase family
           protein contains protein kinase domain, Pfam:PF00069;
           contains S-locus glycoprotein family domain,
           Pfam:PF00954
          Length = 901

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -1

Query: 234 TRTFHC-CLYGFDPQRTVHWPIHRHLGG*SNRVQAN 130
           ++TF C CL GF+P+   HW +    GG + + +A+
Sbjct: 369 SKTFECTCLPGFEPKFPRHWFLRDSSGGCTKKKRAS 404


>At5g10480.1 68418.m01214 protein tyrosine phosphatase-like protein,
           putative (PAS2) identical to PEPINO/PASTICCINO2 protein
           GI:24411193, GI:24575153 from [Arabidopsis thaliana];
           contains Pfam:04387: protein tyrosine phosphatase-like
           protein
          Length = 221

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +3

Query: 171 GWANGLFFAGQIRKDNSEKSWYDELKKPAGLPQSGYLVQL 290
           GWA  L+ A    K+   ++ YD ++KP  L Q+  ++++
Sbjct: 23  GWAQVLYLAITTLKETGYENVYDAIEKPLQLAQTAAVLEI 62


>At5g41870.1 68418.m05098 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein weak
           similarity to polygalacturonase PG1 [Glycine max]
           GI:5669846; contains PF00295: Glycosyl hydrolases family
           28
          Length = 449

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 319 ISHAAVENSPSWTKYPLWGS 260
           +SH  ++NSP WT +P++ S
Sbjct: 195 VSHVVLQNSPFWTLHPVYCS 214


>At2g26100.1 68415.m03132 galactosyltransferase family protein
           contains Pfam profile: PF01762 galactosyltransferase
          Length = 371

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 19  FSHRYT*ISATSSLIKFHYNISSVFTHNP 105
           FSHR+T  S++S     +YN  S  TH P
Sbjct: 4   FSHRFTTASSSSPASPSYYNKPSSKTHKP 32


>At3g62730.1 68416.m07047 expressed protein DESSICATION-RELATED
           PROTEIN PCC13-62 PRECURSOR - Craterostigma plantagineum,
           PIR:E45509
          Length = 317

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +1

Query: 499 DTVIGSVNKTAGLLLIPYLAWLGYASSLSYYIWKNNPKPVKG 624
           D    S+N       IPY+   GY  ++ Y ++ N  K V G
Sbjct: 141 DPYANSLNYLLASYYIPYVGLTGYVGTIPYLVYFNIKKLVAG 182


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,300,489
Number of Sequences: 28952
Number of extensions: 333010
Number of successful extensions: 826
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)