Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0303
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo...    27   2.0  
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    27   2.6  
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces...    27   2.6  
SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase Gpd2|Schi...    26   6.0  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    25   7.9  

>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
 Frame = +1

Query: 376 LCNSDGCSSSEGVEIVVADT-----DGSHLRPLDYSIGEKNKPFKQTSGKWWALTSSNGV 540
           L NSD  S  + V + +        +GS L  +   + E N   ++ S   W+L+SS+ +
Sbjct: 19  LVNSDPASKVDNVSVKIEQESPLALEGSPLPTVSDVLPETNNAHEEVSSSSWSLSSSDSI 78

Query: 541 CILES 555
              +S
Sbjct: 79  MSYDS 83


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 430 DTDGSHLRPLDYSIGEKNKPFKQTSGKWW 516
           DTD + + P+ +S+    KP  +   KWW
Sbjct: 671 DTDEAKVEPIAHSVDYTFKPTVEWWNKWW 699


>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 224

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 626 TTTNRNEAVEQMSQVRNRNAVHRE 555
           TTTN+NE++   S  RNR  + +E
Sbjct: 140 TTTNKNESLPGTSLKRNREIIEKE 163


>SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase
           Gpd2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = -2

Query: 134 GSVSWRAAGAD--GERGHREYERYHPMPHNWFYKK 36
           GS +W  A A   GE      + +HP  H W Y++
Sbjct: 31  GSGNWGTAIAKICGENAKAHPDIFHPQVHMWMYEE 65


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/48 (25%), Positives = 24/48 (50%)
 Frame = +1

Query: 358  YQMQVELCNSDGCSSSEGVEIVVADTDGSHLRPLDYSIGEKNKPFKQT 501
            Y  +  +C ++   +S  ++ VVA  D   ++ +DY +      FK+T
Sbjct: 862  YTKRKIICATNIAETSITIDDVVAVIDSGRVKQIDYDVERDLVTFKET 909


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,595,600
Number of Sequences: 5004
Number of extensions: 48810
Number of successful extensions: 139
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)