Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0303
(699 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1431 + 27057706-27057900,27058701-27058815,27059123-270591... 33 0.29
09_01_0164 + 2424158-2424164,2424165-2424536,2428623-2428807,242... 30 1.5
02_03_0256 - 16917212-16917256,16917845-16917879,16918396-169184... 30 1.5
09_02_0509 + 10051965-10052079,10052467-10052672 30 2.0
04_04_1694 - 35419278-35419565,35419744-35419861,35420404-354204... 29 2.7
12_02_0807 - 23341971-23342153,23342300-23342397,23342451-233425... 29 4.7
05_01_0129 - 872127-872681,872762-873070,873180-873347 29 4.7
02_05_0500 - 29538409-29539283,29540306-29541641 29 4.7
02_03_0099 + 15206282-15206917 29 4.7
10_08_0827 + 20849312-20849833,20850352-20850417,20850786-208510... 28 6.2
05_03_0319 - 12332483-12333033,12334528-12334552 28 6.2
12_02_0634 + 21416205-21416954 28 8.2
08_02_1458 - 27270834-27271320,27271752-27271961,27272627-272736... 28 8.2
>08_02_1431 +
27057706-27057900,27058701-27058815,27059123-27059170,
27059272-27059524,27059689-27059776,27059883-27059948,
27060335-27060403,27060492-27060597,27060639-27060793,
27061208-27061537
Length = 474
Score = 32.7 bits (71), Expect = 0.29
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +1
Query: 508 KWWALTSSNGVCILESSLWTAFRFRT*LICSTASFRFVVVMASNDSLKEI 657
K W L GV I+E WT++R R L+ A F ++ D +EI
Sbjct: 226 KIWRLLRPGGVFIMEPQPWTSYR-RNRLVSEVAKENFNTILIHPDKFREI 274
>09_01_0164 +
2424158-2424164,2424165-2424536,2428623-2428807,
2429045-2429200
Length = 239
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 415 EIVVADTDGSHLRPLDYSIGEKNKPFKQTSGKWWALTSSNGV 540
EI V +HL P + + + + FK + WWA S GV
Sbjct: 138 EITVEQMFNAHLVPEQHRVRQASSEFKDFAIMWWAGLSDEGV 179
>02_03_0256 -
16917212-16917256,16917845-16917879,16918396-16918438,
16919046-16919456
Length = 177
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +1
Query: 415 EIVVADTDGSHLRPLDYSIGEKNKPFKQTSGKWWALTSSNGV 540
E+ V +HL P + + + + FK + WWA+ + +GV
Sbjct: 48 EMTVEQKFSAHLIPDQHRVRQASSEFKDFAIMWWAMLADDGV 89
>09_02_0509 + 10051965-10052079,10052467-10052672
Length = 106
Score = 29.9 bits (64), Expect = 2.0
Identities = 23/82 (28%), Positives = 33/82 (40%)
Frame = +1
Query: 304 SGAGSATSAAFKVKKGGRYQMQVELCNSDGCSSSEGVEIVVADTDGSHLRPLDYSIGEKN 483
+ AGS+ AA V M+ N+ S G E VVA+ D R +
Sbjct: 7 AAAGSSCLAAVIVVAAAMSLMRPRSSNASSASGVRGQEDVVAECDMGTSRA--DATAAAP 64
Query: 484 KPFKQTSGKWWALTSSNGVCIL 549
P +WWA+ +N V +L
Sbjct: 65 PPVSSKRLRWWAVVLANIVVVL 86
>04_04_1694 -
35419278-35419565,35419744-35419861,35420404-35420490,
35420909-35420931,35421647-35421843,35421964-35422159,
35422382-35422481,35423288-35423374,35424053-35424282,
35424678-35424763,35425148-35425271,35425415-35428573,
35430014-35430019
Length = 1566
Score = 29.5 bits (63), Expect = 2.7
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Frame = +1
Query: 289 KKEVWSGAGSATSAAFKVKKGGRYQMQVELCNSDGCSSSE----GVEIVVADTDGSHLRP 456
++E+WSGA SA K KK + ++ DG S VEIV+ + L
Sbjct: 619 QRELWSGATLINSAVKKTKKKSKRISDIDSTGLDGLHSESFMQPAVEIVL--NQETELAS 676
Query: 457 LDYSIGEKN 483
++ S E N
Sbjct: 677 VELSFAENN 685
>12_02_0807 -
23341971-23342153,23342300-23342397,23342451-23342521,
23342522-23342634,23342853-23342943,23343037-23343272,
23343915-23343959,23344113-23344226,23344306-23344369,
23345036-23345059,23345320-23345483,23345598-23345795
Length = 466
Score = 28.7 bits (61), Expect = 4.7
Identities = 23/70 (32%), Positives = 33/70 (47%)
Frame = -1
Query: 372 DLHLVSSALLHFESGRCGAAGTAPDFLLIEQDSGLVGRVAVHTFQLTETSAASFLVTSWL 193
DLH++S+A L S C AA + E D G V ++T T S A+ V +WL
Sbjct: 39 DLHVLSAAFLFVFSAYC-AAQNLESSVNTEGDLGTVSMGILYT-SFTLFSVAASPVVTWL 96
Query: 192 *AVAAWLTST 163
+ A + T
Sbjct: 97 GSKRALVVGT 106
>05_01_0129 - 872127-872681,872762-873070,873180-873347
Length = 343
Score = 28.7 bits (61), Expect = 4.7
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 501 FGKVVGAYFVEWGVYPRKFPVDRVPV 578
+G+ G + V WG+ R+ PV +PV
Sbjct: 77 YGQAAGNFLVAWGLASRRLPVAPLPV 102
>02_05_0500 - 29538409-29539283,29540306-29541641
Length = 736
Score = 28.7 bits (61), Expect = 4.7
Identities = 28/120 (23%), Positives = 48/120 (40%), Gaps = 3/120 (2%)
Frame = +1
Query: 319 ATSAAFKVKKGGRYQMQVELCNSDGCSSSEGVEIVVADTDGSHLRPLDYSIGEKNKPFKQ 498
AT+ +F Q+ L S + S+ V D+ + PLDY + + + F
Sbjct: 38 ATTFSFPTFDKSLMQLGANLTFSSNATVSQSALQVTPDSSNN---PLDYLVNQAGRVFFP 94
Query: 499 TSGKWWALTSSNGVCILESSLWTAFRFRT*LICSTASFR---FVVVMASNDSLKEIEGSF 669
T W+ SSN + + FR L S + + V+AS +++ GS+
Sbjct: 95 TPFVLWSSNSSNSTADGKYVASFSTVFRANLYRSNTTMKGEGLAFVIASTNAINPPPGSY 154
>02_03_0099 + 15206282-15206917
Length = 211
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Frame = +1
Query: 271 SRVLLDKKEVWSGAGSATSAAFKV---KKGGRYQMQVELCNSDGCSSSEGVEIVVADTD 438
+R++++ + + A +ATS A + GGRY + + ++ S++E E+VV + D
Sbjct: 38 ARLIVEAPDSAAPAAAATSLALAAAARRTGGRYALVLPDRDAAAASAAETAEVVVGEAD 96
>10_08_0827 +
20849312-20849833,20850352-20850417,20850786-20851082,
20851215-20851412,20851748-20851849,20851960-20852100,
20852171-20852278,20852588-20852670,20852829-20852991,
20853636-20853650,20853968-20854093
Length = 606
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 546 PRKFPVDRVPVPNLTHLLYGFIPICGG 626
P +F ++ PVPN T+ Y FIP GG
Sbjct: 488 PERFDLEG-PVPNETNTEYRFIPFSGG 513
>05_03_0319 - 12332483-12333033,12334528-12334552
Length = 191
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +1
Query: 415 EIVVADTDGSHLRPLDYSIGEKNKPFKQTSGKWWALTSSNGV 540
E+ V +HL P + + + + FK + WWA +++GV
Sbjct: 54 EMTVEQKFSAHLVPDQHRVRQASSEFKDFAIMWWAGLANDGV 95
>12_02_0634 + 21416205-21416954
Length = 249
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/28 (53%), Positives = 15/28 (53%)
Frame = -2
Query: 167 RRSRTCARPSRGSVSWRAAGADGERGHR 84
RR RT R G WR AG GERG R
Sbjct: 219 RRGRTTLRRG-GRGGWRPAGNVGERGRR 245
>08_02_1458 -
27270834-27271320,27271752-27271961,27272627-27273624,
27274099-27274195,27274278-27274393,27274465-27274590,
27275123-27275233,27275347-27275428,27275844-27275989,
27276457-27276650,27277277-27277388,27277869-27278001,
27278295-27278437,27278488-27278562,27278830-27278937,
27279072-27279197,27279752-27279836,27280358-27280440,
27280545-27280625,27280709-27280789,27281960-27282034,
27282112-27282498,27282902-27283036
Length = 1396
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -2
Query: 143 PSRGSVSWRAAGADGERGHREYERYHPM 60
P S+SWRA G DG +G +++ M
Sbjct: 78 PPSASLSWRAMGVDGPQGSASGQKHLQM 105
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,367,150
Number of Sequences: 37544
Number of extensions: 371029
Number of successful extensions: 1314
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1313
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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