Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0303
         (699 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78018-3|CAB01444.1|  820|Caenorhabditis elegans Hypothetical pr...    31   0.79 
AF106581-5|AAC78210.1|  588|Caenorhabditis elegans Hypothetical ...    29   3.2  
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ...    29   4.2  
U23168-4|AAU87833.1| 1379|Caenorhabditis elegans Temporarily ass...    28   7.4  
U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily ass...    28   7.4  
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass...    28   7.4  
AC006655-5|AAF39873.1|  172|Caenorhabditis elegans Hypothetical ...    28   7.4  

>Z78018-3|CAB01444.1|  820|Caenorhabditis elegans Hypothetical
           protein W07G4.3 protein.
          Length = 820

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
 Frame = +2

Query: 131 NLGWGERT-----FAIVEVNQAATA-YNQLVTKK-DAADVSVNWNVWTATRPTSPESCSI 289
           N GWG+ T     FA+ + N +A   +  + TK  DA D  V W+   AT  +SP    +
Sbjct: 593 NDGWGDLTDGGDMFAVKDSNDSAIDDWADINTKSNDADDWGVGWDTPIATATSSPIP-GV 651

Query: 290 RRKSGAVPAAPHRP 331
           ++ S +  AA  +P
Sbjct: 652 KKSSSSSSAAAKKP 665


>AF106581-5|AAC78210.1|  588|Caenorhabditis elegans Hypothetical
           protein VC5.2 protein.
          Length = 588

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -2

Query: 608 EAVEQMSQVRNR-NAVHRELSRIHTPFDEVSAHHFPEVCLKGLFFSPIE*SRGLKWL 441
           E V+   QV +  N  H+ +  +    D+++A H+ + C K     PIE +  + WL
Sbjct: 259 EMVQDSEQVEHIWNKYHQIIGYLKNEEDQLTAEHYGQFCRKIYRLLPIEQADLMSWL 315


>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
            protein Y40C5A.3 protein.
          Length = 2344

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 26/92 (28%), Positives = 43/92 (46%)
 Frame = -2

Query: 656  ISFKLSFDAITTTNRNEAVEQMSQVRNRNAVHRELSRIHTPFDEVSAHHFPEVCLKGLFF 477
            IS  +S  AI+T + + A EQ S + +       ++ +  P +  S     EV +   F 
Sbjct: 1549 ISKYISSKAISTESVSSA-EQPSYLSSNLPQSSSVASVKPPSNSSSVGQNIEVTVPSYF- 1606

Query: 476  SPIE*SRGLKWLPSVSATTISTPSLELHPSEL 381
             P+E S+ +   P   A++ S PS+   PS L
Sbjct: 1607 -PVEQSKSVTQAPIPPASSPSAPSIPSIPSTL 1637


>U23168-4|AAU87833.1| 1379|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform d protein.
          Length = 1379

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -2

Query: 659  SISFKLSFDAITTTNRNEAVEQMSQVRNRNAVHRELSR-IHTPFDEVSAHH 510
            S+    S   +   NR+E  E  S+ +  N++H E S   H+ ++  S H+
Sbjct: 1287 SMRLASSGSGLLRENRSELREMRSEEKRSNSMHHEESHYAHSSYEHTSEHY 1337


>U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform b protein.
          Length = 4034

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -2

Query: 659  SISFKLSFDAITTTNRNEAVEQMSQVRNRNAVHRELSR-IHTPFDEVSAHH 510
            S+    S   +   NR+E  E  S+ +  N++H E S   H+ ++  S H+
Sbjct: 1287 SMRLASSGSGLLRENRSELREMRSEEKRSNSMHHEESHYAHSSYEHTSEHY 1337


>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform c protein.
          Length = 7548

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -2

Query: 659  SISFKLSFDAITTTNRNEAVEQMSQVRNRNAVHRELSR-IHTPFDEVSAHH 510
            S+    S   +   NR+E  E  S+ +  N++H E S   H+ ++  S H+
Sbjct: 1287 SMRLASSGSGLLRENRSELREMRSEEKRSNSMHHEESHYAHSSYEHTSEHY 1337


>AC006655-5|AAF39873.1|  172|Caenorhabditis elegans Hypothetical
           protein H10D18.1 protein.
          Length = 172

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 8/29 (27%), Positives = 20/29 (68%)
 Frame = +2

Query: 164 VEVNQAATAYNQLVTKKDAADVSVNWNVW 250
           +E+++   AY Q+++ K  +D ++ WN++
Sbjct: 3   LEISEKIKAYRQVMSAKSPSDAALTWNLF 31


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,797,350
Number of Sequences: 27780
Number of extensions: 285609
Number of successful extensions: 819
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)