Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0303
         (699 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   3.7  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   8.5  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   8.5  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -1

Query: 231 ETSAASFLVTSWL*AVAAWLTSTIANVRSPQ 139
           +    +F+VTSWL  + +++   I  V +P+
Sbjct: 653 QPGVTAFIVTSWLGYMNSFVNPVIYTVFNPE 683


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/25 (32%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +2

Query: 140 WGERTFAIV-EVNQAATAYNQLVTK 211
           WG++TF I+ + N   ++ N +  K
Sbjct: 70  WGDKTFVIIMKFNGVPSSLNVITNK 94


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 304 SGAGSATSAAFKVKKGGRYQMQVELC 381
           +G GS+     + KKG   + Q ELC
Sbjct: 162 NGYGSSDGCDARKKKGPTPRQQEELC 187


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,208
Number of Sequences: 438
Number of extensions: 3343
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)