Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0303
         (699 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62360.1 68416.m07005 expressed protein                             31   0.73 
At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp...    29   2.2  
At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp...    29   2.2  
At5g17310.2 68418.m02028 UTP--glucose-1-phosphate uridylyltransf...    29   3.0  
At4g15080.1 68417.m02317 zinc finger (DHHC type) family protein ...    28   5.2  
At2g24680.1 68415.m02947 transcriptional factor B3 family protei...    28   6.8  

>At3g62360.1 68416.m07005 expressed protein
          Length = 1227

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = +1

Query: 313 GSATSAAFKVKKGGRYQMQVELCNSDGCSSSEGVEIVVADTDGSHL 450
           G+    +  +K GG   + VEL +SDG  S + V  V+  +DGS+L
Sbjct: 138 GAVGGESCLIKNGGPADVNVELLSSDG--SEDPVASVLTSSDGSYL 181


>At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp
           domain-containing protein contains Pfam domain PF01805:
           Surp module
          Length = 844

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 630 HHHHKSE*SRRANESGSEPERG 565
           HHHH+   SRR +E  S+ E G
Sbjct: 755 HHHHRHRSSRRKHEDSSDVEHG 776


>At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp
           domain-containing protein contains Pfam domain PF01805:
           Surp module
          Length = 843

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 630 HHHHKSE*SRRANESGSEPERG 565
           HHHH+   SRR +E  S+ E G
Sbjct: 755 HHHHRHRSSRRKHEDSSDVEHG 776


>At5g17310.2 68418.m02028 UTP--glucose-1-phosphate
           uridylyltransferase, putative / UDP-glucose
           pyrophosphorylase, putative / UGPase, putative strong
           similarity to SP|P19595 UTP--glucose-1-phosphate
           uridylyltransferase (EC 2.7.7.9) (UDP-glucose
           pyrophosphorylase) (UDPGP) (UGPase) {Solanum tuberosum};
           contains Pfam profile PF01704: UTP--glucose-1-phosphate
           uridylyltransferase
          Length = 470

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = -2

Query: 668 KLPSISFKLSFDAITTTNRNEA---VEQMSQVRNRNAVHRELSRIHTPFDEV 522
           KLP +  K + D +T  + NE    +  +S+  +  A H E S+I TP DE+
Sbjct: 8   KLPQL--KSAVDGLTEMSENEKSGFINLVSRYLSGEAQHIEWSKIQTPTDEI 57


>At4g15080.1 68417.m02317 zinc finger (DHHC type) family protein
           contains Pfam profile PF01529: DHHC zinc finger domain
          Length = 718

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -2

Query: 668 KLPSISFKLSFDAITTTNRNEAVEQMSQVRNRNAVHRELSRIHTPFDEVSA 516
           K+P    K+S   +   N NEA    ++ R  ++V R +   H   DE+S+
Sbjct: 395 KIPKRPVKISAWKLAKLNSNEATRAAARARASSSVLRPIENRHLHDDELSS 445


>At2g24680.1 68415.m02947 transcriptional factor B3 family protein
           low similarity to reproductive meristem gene 1 from
           [Brassica oleracea var. botrytis] GI:3170424,
           [Arabidopsis thaliana] GI:13604227; contains Pfam
           profile PF02362: B3 DNA binding domain
          Length = 851

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 167 RRSRTCARPSRGSVSWRAAGADGER 93
           + S  CA PSRG+  W+A     ER
Sbjct: 711 KESSICAEPSRGNKKWKATNNRKER 735


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,115,453
Number of Sequences: 28952
Number of extensions: 275931
Number of successful extensions: 698
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)