BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0302 (717 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_26644| Best HMM Match : Collagen (HMM E-Value=0) 29 2.8 >SB_26644| Best HMM Match : Collagen (HMM E-Value=0) Length = 877 Score = 29.5 bits (63), Expect = 2.8 Identities = 22/61 (36%), Positives = 32/61 (52%) Frame = +3 Query: 84 MLFGNI*NSVHWLI*FLVLAPLDTAKTFLFVLSNRGILKRQPHTIIIIQNTIYHSVTTGV 263 M F + NS W FL L T +T L VL + +++ TIII +N++ H + GV Sbjct: 467 MKFDSEFNSSTWKC-FLAL----TERTALKVLPDLKAIRQVKITIIIFENSVSHECSIGV 521 Query: 264 R 266 R Sbjct: 522 R 522 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 20,418,415 Number of Sequences: 59808 Number of extensions: 405791 Number of successful extensions: 802 Number of sequences better than 10.0: 1 Number of HSP's better than 10.0 without gapping: 708 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 802 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1901817086 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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