Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0302
         (717 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g16740.1 68416.m02137 F-box family protein contains F-box dom...    29   3.1  
At1g59820.1 68414.m06735 haloacid dehalogenase-like hydrolase fa...    28   7.1  

>At3g16740.1 68416.m02137 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 391

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 516 RCYKILRYSFDYTSIDGVTLRRNNTIFKINT 608
           RCYKILR+  DY     + L R   I+ +N+
Sbjct: 159 RCYKILRFMDDYEDDRALRLIREFEIYDLNS 189


>At1g59820.1 68414.m06735 haloacid dehalogenase-like hydrolase
           family protein similar to Potential
           phospholipid-transporting ATPase (EC 3.6.3.1) from Mus
           musculus [SP|P70704], {Bos taurus} SP|Q29449; contains
           InterPro accession IPR005834: Haloacid dehalogenase-like
           hydrolase
          Length = 1213

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +2

Query: 8   LQSKREFSYLIVAFILLTSCLVIHTDVVWKYLKLCSLVNIVF 133
           +Q+     + I  F  LT  L++H    W YL++C +V   F
Sbjct: 868 MQAVMASDFAIAQFRFLTDLLLVHGR--WSYLRICKVVMYFF 907


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,063,433
Number of Sequences: 28952
Number of extensions: 271737
Number of successful extensions: 573
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)