Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0301
         (687 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    25   0.44 
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    21   7.2  
EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450 ...    21   9.5  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 153  PKEWHKDANKSPDHDQ 200
            PK W  D NK PD D+
Sbjct: 2445 PKCWQVDCNKGPDSDK 2460



 Score = 23.0 bits (47), Expect = 2.3
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 153  PKEWHKDANKSPDHDQ 200
            PK W  D  K PD D+
Sbjct: 1522 PKCWQVDCKKGPDSDK 1537



 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 153  PKEWHKDANKSPDHDQ 200
            PK W  D NK P  D+
Sbjct: 1947 PKCWQVDCNKGPASDK 1962


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 414 YQQFSNGKEVENKYLFLEHLQ 476
           YQQ SN + V+N   F +  Q
Sbjct: 501 YQQLSNYRNVDNSAKFKDGFQ 521


>EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450
           protein.
          Length = 493

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +2

Query: 317 KAVPESDIEYTEQRERSNTLTDGSKIVDDIKV 412
           K +    I+      ++ T+TD  K  +DIK+
Sbjct: 257 KIIRNDFIDLLSNLRKTETITDSYKFDNDIKM 288


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,438
Number of Sequences: 336
Number of extensions: 3673
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18010165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)