Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0301
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.03c |||AMP-activated protein kinase beta subunit |Schiz...    42   1e-04
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    26   4.4  
SPCC61.05 |||S. pombe specific multicopy membrane protein family...    25   7.8  

>SPCC1919.03c |||AMP-activated protein kinase beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 298

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 17/40 (42%), Positives = 30/40 (75%), Gaps = 3/40 (7%)
 Frame = +2

Query: 413 LPTVFKWEGGGKQVFISGTFTDW-KTIPMVKS--HVILLQ 523
           +PT+ +W GGG+ V+++G+F+ W K I ++KS  + +LLQ
Sbjct: 99  VPTIIRWRGGGEVVYVTGSFSRWKKKIQLLKSEDYTVLLQ 138


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 166 CHSLGWLLPAFPI*FSTKKILKNCICNLIPNI 71
           C S  WL+  F    + +   KN I  L+PNI
Sbjct: 600 CFSSEWLIKCFEDMIANESASKNEIMKLVPNI 631


>SPCC61.05 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 469

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -1

Query: 444 PPPSHLKTVGNTLISSTILLPSVRVFDLSRC 352
           PP S+ +T+ +TL++ ++ L  + +  L RC
Sbjct: 191 PPESYFRTIKSTLLAISMFLGFITLTWLLRC 221


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,874,907
Number of Sequences: 5004
Number of extensions: 61898
Number of successful extensions: 145
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)