Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0301
(687 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0807 - 19860041-19860132,19860248-19860347,19861101-198611... 43 2e-04
03_06_0744 + 35910512-35910569,35911145-35911325,35912332-359124... 42 3e-04
07_03_1739 - 29148685-29149017,29149564-29149726,29149844-291500... 38 0.007
03_05_0730 + 27208293-27208813,27209052-27209173,27210429-272104... 36 0.040
05_05_0310 - 23991461-23991652,23991780-23991965,23992813-239930... 35 0.053
03_02_0815 + 11477618-11477845,11478206-11478337,11480227-114804... 32 0.37
03_01_0052 - 450258-450285,450345-450457,450540-450746,451021-45... 32 0.49
08_02_0502 + 17844775-17845092,17845528-17845634,17846039-178464... 31 0.65
02_01_0284 + 1907249-1907665,1907816-1907859,1909508-1909546,190... 30 1.5
08_01_0356 + 3131214-3132443,3132584-3132778,3132892-3132972,313... 29 4.6
03_06_0367 - 33413530-33413710,33414347-33414681,33414908-334150... 28 6.0
07_03_1042 + 23487326-23487443,23487555-23487957,23488057-234883... 28 8.0
04_04_0705 - 27406405-27406424,27406425-27409260 28 8.0
04_03_0963 + 21285160-21285579,21286585-21286635,21287017-212875... 28 8.0
>04_03_0807 -
19860041-19860132,19860248-19860347,19861101-19861170,
19861344-19861407,19862531-19862704,19862805-19862946,
19863413-19863544,19863616-19863705,19864093-19864152,
19864227-19864343,19864441-19864611,19866909-19866984,
19867156-19867223
Length = 451
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/50 (38%), Positives = 28/50 (56%)
Frame = +1
Query: 496 GKITCDFVTIIDLPEGEHQYQYFVDGEWRHDPTVKVIDNGMGAQNNLVTV 645
G + +F + DLP G +QY++ VDG WR D T + + G +N V V
Sbjct: 30 GLVGAEFQVVFDLPPGVYQYRFLVDGVWRCDETKPCVRDEYGLISNEVLV 79
Score = 29.5 bits (63), Expect = 2.6
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 425 FKWEGGGKQVFISGTFTDWKTIPM 496
F W GG++ G+FT W+ PM
Sbjct: 6 FAWPYGGQRASFCGSFTGWRECPM 29
>03_06_0744 +
35910512-35910569,35911145-35911325,35912332-35912419,
35912541-35912726,35913591-35913725,35913803-35913862,
35914609-35914698,35915384-35915515,35916039-35916183,
35916266-35916439,35916629-35916692,35916778-35916847,
35917328-35917445,35918258-35918280,35918398-35918499,
35919831-35920250,35920327-35920563
Length = 760
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/41 (46%), Positives = 21/41 (51%)
Frame = +1
Query: 514 FVTIIDLPEGEHQYQYFVDGEWRHDPTVKVIDNGMGAQNNL 636
F I L G HQY++ VDGEWRHD I G N L
Sbjct: 97 FQAICSLSPGIHQYKFCVDGEWRHDERQPTITGDYGVVNTL 137
Score = 35.5 bits (78), Expect = 0.040
Identities = 14/29 (48%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
Frame = +2
Query: 413 LPTVFKWEGGGKQVFISGTFTDW-KTIPM 496
+PT F W GGK+V+++G+FT W + +PM
Sbjct: 59 VPTRFVWPYGGKRVYLTGSFTRWTEHLPM 87
>07_03_1739 -
29148685-29149017,29149564-29149726,29149844-29150028,
29150708-29150977
Length = 316
Score = 37.9 bits (84), Expect = 0.007
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 4/42 (9%)
Frame = +2
Query: 407 KVLPTVFKWEGGGKQVFISGTFTDWKTIPMV----KSHVILL 520
K++PT+ W GGK V+I G++ +WK+ +V K H ++L
Sbjct: 125 KLIPTLLVWTLGGKNVYIEGSWDNWKSKQLVHKCGKDHCVML 166
>03_05_0730 +
27208293-27208813,27209052-27209173,27210429-27210477,
27210689-27210938,27211474-27211619,27211699-27211846,
27212544-27212612,27212641-27212784
Length = 482
Score = 35.5 bits (78), Expect = 0.040
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +1
Query: 550 QYQYFVDGEWRHDPTVKVIDNGMGAQNNLVTV 645
Q ++ VDG WR+DP ++ N G +NNL+TV
Sbjct: 451 QIKFIVDGVWRNDPLRPLVSNN-GHENNLLTV 481
>05_05_0310 -
23991461-23991652,23991780-23991965,23992813-23993094,
23993220-23993382,23993477-23993661,23994154-23994205,
23994292-23994392,23995244-23995417
Length = 444
Score = 35.1 bits (77), Expect = 0.053
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Frame = +2
Query: 407 KVLPTVFKWEGGGKQVFISGTFTDWKTIPMV----KSHVILL 520
K +PT+ W GG +VF+ G++ +W + ++ K H ILL
Sbjct: 144 KGIPTLISWSQGGNEVFVEGSWDNWTSRRVLEKSGKDHTILL 185
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +1
Query: 511 DFVTIIDLPEGEHQYQYFVDGEWRHDPTVKVIDNGMGAQNNLVTV 645
D ++ LP G + Y+ VDGE ++ P + + + G NL+ V
Sbjct: 180 DHTILLVLPSGVYHYRIIVDGEPKYVPELPHVADEGGQVANLLDV 224
>03_02_0815 +
11477618-11477845,11478206-11478337,11480227-11480408,
11480500-11480662,11481480-11481794
Length = 339
Score = 32.3 bits (70), Expect = 0.37
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Frame = +2
Query: 407 KVLPTVFKWEGGGKQVFISGTFTDWKT-IPMVKS---HVILL 520
K +P + W GGK V + G++ +WK+ PM KS H +LL
Sbjct: 154 KEIPVLIVWTLGGKNVSVEGSWDNWKSRKPMQKSGKDHSLLL 195
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +1
Query: 511 DFVTIIDLPEGEHQYQYFVDGEWRHDPTVKVIDNGMGAQNNLVTV 645
D ++ LP G ++Y++ VDGE + P + + MG NL+ V
Sbjct: 190 DHSLLLILPSGVYRYRFVVDGERKCLPDLPCETDIMGNAVNLLDV 234
>03_01_0052 -
450258-450285,450345-450457,450540-450746,451021-451080,
451281-451376,451495-451551,451786-451845,452774-452853,
454265-454367,454530-454571
Length = 281
Score = 31.9 bits (69), Expect = 0.49
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +1
Query: 538 EGEHQYQYFVDGEW-RHDPTVKVIDNGMGAQNNLVTV 645
EG ++Y+Y VDG+W +D K N G NN V V
Sbjct: 200 EGRYEYKYIVDGKWVCNDNEKKTKANADGHVNNYVQV 236
>08_02_0502 +
17844775-17845092,17845528-17845634,17846039-17846492,
17846623-17846694,17846804-17846925,17847079-17847294,
17847392-17847500,17847618-17847730,17847916-17848063,
17848274-17848396
Length = 593
Score = 31.5 bits (68), Expect = 0.65
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +1
Query: 526 IDLPEGEHQYQYFVDGEWRHDPTVKVIDNGMGAQNNLVTV 645
I L G++ Y++ G+WRH ++ + G NN++ V
Sbjct: 498 IRLRHGKYYYKFIAGGQWRHSTSLPTETDEHGNVNNVIRV 537
>02_01_0284 +
1907249-1907665,1907816-1907859,1909508-1909546,
1909791-1910112,1910803-1910892,1911541-1911609,
1911969-1912074,1912146-1912234,1912349-1912461,
1912555-1912657
Length = 463
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +1
Query: 514 FVTIIDLPEGEHQYQYFVDGEWRHDPTVKVIDNGMGAQNNLVTV 645
F ++L G ++ ++ VDGEWR ID QNN++ V
Sbjct: 420 FSATLNLRPGRYEIKFLVDGEWRLSLEYP-IDGEGSMQNNILVV 462
>08_01_0356 +
3131214-3132443,3132584-3132778,3132892-3132972,
3133324-3133383,3133466-3133560,3133660-3133816,
3133896-3134021,3134398-3134478,3134557-3134647,
3134735-3134868,3135068-3135136,3135219-3135308,
3135405-3135508,3135594-3135762,3136066-3136134
Length = 916
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +2
Query: 446 KQVFISGTFTDWKTIPMVKSHVI 514
KQ FI FTDW+ I + K+HVI
Sbjct: 426 KQTFIDNFFTDWRKI-LGKNHVI 447
>03_06_0367 -
33413530-33413710,33414347-33414681,33414908-33415023,
33415107-33415235,33415657-33415723,33415780-33415854,
33416054-33416149,33416404-33416592
Length = 395
Score = 28.3 bits (60), Expect = 6.0
Identities = 9/44 (20%), Positives = 26/44 (59%)
Frame = -1
Query: 570 INKILVLMFTFW*IYYCNKITCDFTMGIVFQSVNVPEINTCFPP 439
+ ++LV + T + +C+K + + ++ ++ +P ++TC+ P
Sbjct: 254 VGRVLVGIPTILVVKFCSKALSKWLLPVMCNTLGIPIVSTCYVP 297
>07_03_1042 +
23487326-23487443,23487555-23487957,23488057-23488397,
23488621-23489660
Length = 633
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +3
Query: 147 NQPKEWHKDANKSPDHDQGPSSPAKEGEAFTFD 245
N ++WH +N+ + + GP P G T+D
Sbjct: 526 NSVQQWHHRSNQQMEMEPGPMLPGGLGLGLTYD 558
>04_04_0705 - 27406405-27406424,27406425-27409260
Length = 951
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -1
Query: 519 NKITCDFTMGIVFQSVNVP-EINTCFPPPSHLK 424
+K+TC +GI+ Q NV ++ +PPP L+
Sbjct: 716 SKMTCLLRLGIISQDANVKLDLEPFYPPPIKLQ 748
>04_03_0963 +
21285160-21285579,21286585-21286635,21287017-21287502,
21287866-21287961
Length = 350
Score = 27.9 bits (59), Expect = 8.0
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 8/63 (12%)
Frame = +2
Query: 296 DGAPYYTKAVPESDIEYTEQRERSNTLTDGSKIVD---DIKVL-PTVF----KWEGGGKQ 451
D +PY+T V +++ + + E+SN+ + K V+ +KV PT+F K EG GK
Sbjct: 13 DESPYHTAVVTTNNLVRSIKAEKSNSSSSSGKPVETDIGLKVASPTMFGFNTKIEGTGKN 72
Query: 452 VFI 460
+ +
Sbjct: 73 MAV 75
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,569,493
Number of Sequences: 37544
Number of extensions: 356520
Number of successful extensions: 887
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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