Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0301
(687 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15627| Best HMM Match : AMPKBI (HMM E-Value=3e-36) 47 2e-05
SB_6428| Best HMM Match : DUF652 (HMM E-Value=8.7) 32 0.38
SB_47890| Best HMM Match : DUF652 (HMM E-Value=7) 30 2.0
SB_48507| Best HMM Match : TolA (HMM E-Value=1) 30 2.0
SB_12786| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0) 28 6.2
SB_38940| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_24309| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_36446| Best HMM Match : GTP_CDC (HMM E-Value=0) 28 8.1
SB_26947| Best HMM Match : LIM (HMM E-Value=6.2e-32) 28 8.1
SB_22693| Best HMM Match : DUF1042 (HMM E-Value=0.00027) 28 8.1
SB_1817| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
>SB_15627| Best HMM Match : AMPKBI (HMM E-Value=3e-36)
Length = 255
Score = 46.8 bits (106), Expect = 2e-05
Identities = 18/29 (62%), Positives = 24/29 (82%), Gaps = 1/29 (3%)
Frame = +2
Query: 413 LPTVFKWEGGGKQVFISGTFTDWKT-IPM 496
+PTV +WE GG++V +SG+F DWKT IPM
Sbjct: 69 IPTVIRWENGGRKVLLSGSFNDWKTRIPM 97
>SB_6428| Best HMM Match : DUF652 (HMM E-Value=8.7)
Length = 98
Score = 32.3 bits (70), Expect = 0.38
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +1
Query: 514 FVTIIDLPEGEHQYQYFVDGEWRHDPTVKVIDNGMGAQN 630
F+ ID QYQY+ G++ HD TV +D G A N
Sbjct: 37 FLPRIDRTPLMQQYQYWDKGKYAHDVTVPTLDKGKYALN 75
>SB_47890| Best HMM Match : DUF652 (HMM E-Value=7)
Length = 384
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +1
Query: 514 FVTIIDLPEGEHQYQYFVDGEWRHDPTVKVIDNGMGAQN 630
F+ ID QYQY+ G + D TV V+D G A N
Sbjct: 31 FLPRIDRTPLMQQYQYWDKGRYAFDVTVPVLDKGKYALN 69
>SB_48507| Best HMM Match : TolA (HMM E-Value=1)
Length = 649
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 311 YTKAVPESDIEYTEQRERSNTLTDGSKIVD 400
Y K V E DI+ + +RS+ DG KIVD
Sbjct: 292 YQKEVAEDDIDDMKAEKRSDVEEDGKKIVD 321
>SB_12786| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 459
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 550 QYQYFVDGEWRHDPTVKVIDNGMGAQN 630
QYQY+ G++ D TV V+D G A N
Sbjct: 261 QYQYWDKGKYAFDVTVPVLDKGKYALN 287
>SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0)
Length = 768
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 299 GAPYYTKAVPESDIEYTEQRERSNTLTDGSKI 394
G PYYT+ V E +EY+ ++ + DG+ +
Sbjct: 697 GRPYYTQGVTEYTVEYSLTGDQWQSYQDGNGV 728
>SB_38940| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 81
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 421 SFQMGRRWKTSIYFWNIYRLENYSHGKITCDF 516
SF+ RW ++ FWN+ + E K+T F
Sbjct: 27 SFKSSSRWLGALVFWNVEQSEMQKIRKLTARF 58
>SB_24309| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 303
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Frame = +1
Query: 421 SFQMGRRWKTSIYFWNIYRLEN-YSH-GKI-TCDFVT-IIDLPEGEHQYQYFVDGEWR 582
+F G RW+T + Y++EN H K+ +++ + +P GEH + +WR
Sbjct: 195 TFSKGTRWRTQTDIYQRYQVENTVRHFSKVQRGEYIRHLSKVPSGEHSQTFSKGTKWR 252
>SB_36446| Best HMM Match : GTP_CDC (HMM E-Value=0)
Length = 384
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 433 GRRWKTSIYFWNIYRLENYSHGKITCDFVTI 525
G+R + +Y W + +EN H CDFV +
Sbjct: 211 GKRVRARVYPWGVVEVENVEH----CDFVAL 237
>SB_26947| Best HMM Match : LIM (HMM E-Value=6.2e-32)
Length = 648
Score = 27.9 bits (59), Expect = 8.1
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +1
Query: 478 LENYSHGKITCDFVTIIDLPEGEHQYQYFVDGEWRHDPTVKVIDNGMGAQNNLVTVKCQI 657
+E S+G D V++ D G + QYF E H V DNG Q++ ++
Sbjct: 353 IETPSYGSDGFDSVSVQD---GNCEQQYFTKNEEGHSSGVASSDNGSRTQDDHAIKPYKV 409
Query: 658 LRY 666
+ Y
Sbjct: 410 IAY 412
>SB_22693| Best HMM Match : DUF1042 (HMM E-Value=0.00027)
Length = 2261
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/45 (24%), Positives = 20/45 (44%)
Frame = +3
Query: 141 GSNQPKEWHKDANKSPDHDQGPSSPAKEGEAFTFDKKLTMIEVVE 275
G ++ KD PD + P+ P+ E FD + + ++E
Sbjct: 1639 GKDKKAAGKKDKQADPDKPETPAPPSDPDEKLVFDAYMLSLTIIE 1683
>SB_1817| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1300
Score = 27.9 bits (59), Expect = 8.1
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Frame = -2
Query: 275 LDYFDHR*LFIKREGFP---FFGWR*RSLIMIRRFVSIFMPFFGLVTSGIPHLIFN*ENF 105
+D F+ ++EG +F ++ R L R + + L + GIPH++ N F
Sbjct: 994 VDTFERSGYLYRKEGAMKKRWFTFKDRQLKYYRGVFKVHISLQELGSDGIPHIVANCLQF 1053
Query: 104 KKLYL*FNT*HSLKKLLTWL 45
+ Y N + K+L TW+
Sbjct: 1054 IETYETIN--RARKRLQTWI 1071
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,377,803
Number of Sequences: 59808
Number of extensions: 419923
Number of successful extensions: 1015
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1012
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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