Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0301
(687 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81550-1|CAB04480.1| 269|Caenorhabditis elegans Hypothetical pr... 52 3e-07
AL117202-12|CAB55074.1| 274|Caenorhabditis elegans Hypothetical... 44 1e-04
U41543-4|AAM69116.1| 575|Caenorhabditis elegans Hypothetical pr... 43 2e-04
U41543-3|AAB37024.1| 572|Caenorhabditis elegans Hypothetical pr... 43 2e-04
AF068708-2|AAC17753.1| 464|Caenorhabditis elegans Hypothetical ... 28 5.4
Z75712-6|CAB00048.1| 1188|Caenorhabditis elegans Hypothetical pr... 28 7.2
Z75712-5|CAB00045.1| 1186|Caenorhabditis elegans Hypothetical pr... 28 7.2
AF013950-1|AAC47747.1| 1186|Caenorhabditis elegans APR-1 protein. 28 7.2
Z83216-11|CAB05679.2| 404|Caenorhabditis elegans Hypothetical p... 27 9.5
Z66567-1|CAA91491.1| 887|Caenorhabditis elegans Hypothetical pr... 27 9.5
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr... 27 9.5
>Z81550-1|CAB04480.1| 269|Caenorhabditis elegans Hypothetical
protein F55F3.1 protein.
Length = 269
Score = 52.4 bits (120), Expect = 3e-07
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Frame = +1
Query: 499 KITCDFVTIIDLPEGEHQYQYFVDGEWRHDPTVKVIDNGMGAQNNLVTV-KCQILRYSAL 675
K T DF TI+DL G+H+Y++ VD +W D + N +G +NN+V + + + AL
Sbjct: 90 KSTSDFSTIVDLEPGKHEYKFMVDSKWVVDDNQQKTGNNLGGENNVVMIDEADFEVFDAL 149
Query: 676 AKD 684
KD
Sbjct: 150 DKD 152
>AL117202-12|CAB55074.1| 274|Caenorhabditis elegans Hypothetical
protein Y47D3A.15 protein.
Length = 274
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/50 (38%), Positives = 30/50 (60%)
Frame = +1
Query: 499 KITCDFVTIIDLPEGEHQYQYFVDGEWRHDPTVKVIDNGMGAQNNLVTVK 648
K T DF TIIDL G+++Y++ VDG W D + G +NN++ ++
Sbjct: 95 KSTNDFSTIIDLQPGQYEYKFQVDGSWVVDDNQGKAQDVHGNENNMINIQ 144
>U41543-4|AAM69116.1| 575|Caenorhabditis elegans Hypothetical
protein F46H5.7b protein.
Length = 575
Score = 42.7 bits (96), Expect = 2e-04
Identities = 13/41 (31%), Positives = 27/41 (65%)
Frame = +1
Query: 526 IDLPEGEHQYQYFVDGEWRHDPTVKVIDNGMGAQNNLVTVK 648
++L G H++++ ++GEW + + NG+G QNN++ V+
Sbjct: 535 VNLTRGRHEFRFMINGEWATSSDYQQVPNGLGGQNNIIFVE 575
>U41543-3|AAB37024.1| 572|Caenorhabditis elegans Hypothetical
protein F46H5.7a protein.
Length = 572
Score = 42.7 bits (96), Expect = 2e-04
Identities = 13/41 (31%), Positives = 27/41 (65%)
Frame = +1
Query: 526 IDLPEGEHQYQYFVDGEWRHDPTVKVIDNGMGAQNNLVTVK 648
++L G H++++ ++GEW + + NG+G QNN++ V+
Sbjct: 532 VNLTRGRHEFRFMINGEWATSSDYQQVPNGLGGQNNIIFVE 572
>AF068708-2|AAC17753.1| 464|Caenorhabditis elegans Hypothetical
protein C18G1.6 protein.
Length = 464
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -1
Query: 477 SVNVPEINTCFPPPSHLKTVGNTLISSTILLPSVRVFDLSRC 352
++N +IN+ FP +K N + P +R+F LSRC
Sbjct: 44 TINTDQINSSFP----IKFYHNAYVDYRYETPRLRIFALSRC 81
>Z75712-6|CAB00048.1| 1188|Caenorhabditis elegans Hypothetical protein
K04G2.8b protein.
Length = 1188
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +1
Query: 526 IDLPEGEHQYQYFVDGEWRHDPTVKVIDNGMGAQNNLVTVKCQIL 660
+D + ++ Y +F D E DP D+G+ AQ +T+ C ++
Sbjct: 965 VDDDDYDYTYDHFEDYEDEEDPDATQFDDGVDAQ---LTIDCSMI 1006
>Z75712-5|CAB00045.1| 1186|Caenorhabditis elegans Hypothetical protein
K04G2.8a protein.
Length = 1186
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +1
Query: 526 IDLPEGEHQYQYFVDGEWRHDPTVKVIDNGMGAQNNLVTVKCQIL 660
+D + ++ Y +F D E DP D+G+ AQ +T+ C ++
Sbjct: 963 VDDDDYDYTYDHFEDYEDEEDPDATQFDDGVDAQ---LTIDCSMI 1004
>AF013950-1|AAC47747.1| 1186|Caenorhabditis elegans APR-1 protein.
Length = 1186
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +1
Query: 526 IDLPEGEHQYQYFVDGEWRHDPTVKVIDNGMGAQNNLVTVKCQIL 660
+D + ++ Y +F D E DP D+G+ AQ +T+ C ++
Sbjct: 963 VDDDDYDYTYDHFEDYEDEEDPDATQFDDGVDAQ---LTIDCSMI 1004
>Z83216-11|CAB05679.2| 404|Caenorhabditis elegans Hypothetical
protein C08F11.13 protein.
Length = 404
Score = 27.5 bits (58), Expect = 9.5
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = -2
Query: 632 LFWAPIPLSITFTVGSCLHSPSTKYW 555
+ W+ IPL + VG+ + SP++ +W
Sbjct: 344 VIWSSIPLYVIGKVGNVVFSPNSLFW 369
>Z66567-1|CAA91491.1| 887|Caenorhabditis elegans Hypothetical
protein ZK455.1 protein.
Length = 887
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 338 IEYTEQRERSNTLTDGSKIVDDIKVLP 418
IE+ RER N L GSK D++ ++P
Sbjct: 143 IEFERNRERFNFLKWGSKAFDNLLIVP 169
>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
C41A3.1 protein.
Length = 7829
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 478 ICKCSRNKYLFSTSFPFENCW*YFNIVD 395
IC NKYL F F+N +FN+ D
Sbjct: 5363 ICSTGNNKYLLKNPFGFDNK--FFNLTD 5388
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,712,524
Number of Sequences: 27780
Number of extensions: 337421
Number of successful extensions: 970
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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