Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0301
         (687 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    24   1.2  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    23   3.6  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   4.8  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    22   6.3  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    22   6.3  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   6.3  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = -1

Query: 399 STILLPSVRVFDLSRCSVYSIS 334
           ST+ +PSV++ +  +CS+ SI+
Sbjct: 388 STLNIPSVKIDEDQKCSIESIT 409


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 14/55 (25%), Positives = 25/55 (45%)
 Frame = +1

Query: 514 FVTIIDLPEGEHQYQYFVDGEWRHDPTVKVIDNGMGAQNNLVTVKCQILRYSALA 678
           +VTIID P      +  + G  + D  V ++  G+G     ++   Q   ++ LA
Sbjct: 86  YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGIGEFEAGISKNGQTREHALLA 140


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 147 NQPKEWHKDANKSPDHDQGPSSPAKEGEAFT 239
           N    +H+  +K+ D+D   S  A  GE+FT
Sbjct: 219 NSDDSFHRLTSKTFDNDLRYSELAVAGESFT 249


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 14/55 (25%), Positives = 24/55 (43%)
 Frame = +1

Query: 514 FVTIIDLPEGEHQYQYFVDGEWRHDPTVKVIDNGMGAQNNLVTVKCQILRYSALA 678
           +VTIID P      +  + G  + D  V ++  G G     ++   Q   ++ LA
Sbjct: 13  YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA 67


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 14/55 (25%), Positives = 24/55 (43%)
 Frame = +1

Query: 514 FVTIIDLPEGEHQYQYFVDGEWRHDPTVKVIDNGMGAQNNLVTVKCQILRYSALA 678
           +VTIID P      +  + G  + D  V ++  G G     ++   Q   ++ LA
Sbjct: 29  YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA 83


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 14/55 (25%), Positives = 24/55 (43%)
 Frame = +1

Query: 514 FVTIIDLPEGEHQYQYFVDGEWRHDPTVKVIDNGMGAQNNLVTVKCQILRYSALA 678
           +VTIID P      +  + G  + D  V ++  G G     ++   Q   ++ LA
Sbjct: 86  YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA 140


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,391
Number of Sequences: 438
Number of extensions: 4253
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)